FFCP PHASE1:Hg19::chr1:53556639..53556664,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6512 | |EntrezGene=6512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10945 | |HGNC=10945 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000488036,uc001cux.2_5end | |association_with_transcript=0bp_to_ENST00000488036,uc001cux.2_5end | ||
|cluster_id=chr1:53556639..53556664,- | |||
|coexpression_cluster_id=C3986 | |||
|description=CAGE_peak_2_at_SLC1A7_5end | |description=CAGE_peak_2_at_SLC1A7_5end | ||
|id=chr1:53556639..53556664,- | |id=chr1:53556639..53556664,- | ||
|ontology_enrichment_celltype=CL:0000625!1.13e-07!11 | |ontology_enrichment_celltype=CL:0000625!1.13e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0002195;1.51e-07;2!CL:0002571;1.51e-07;2!CL:1000306;6.65e-07;4!CL:0002547;6.65e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,1.51e-07,2;CL:0002571,1.51e-07,2;CL:1000306,7.93e-07,4;CL:0002547,7.93e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006965;4.74e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.86e-42!115;UBERON:0001049!5.93e-14!57;UBERON:0005068!5.93e-14!57;UBERON:0006241!5.93e-14!57;UBERON:0007135!5.93e-14!57;UBERON:0002616!3.27e-12!59;UBERON:0005743!1.16e-10!86;UBERON:0003075!1.49e-10!86;UBERON:0007284!1.49e-10!86;UBERON:0000955!3.25e-10!69;UBERON:0006238!3.25e-10!69;UBERON:0002298!9.90e-10!8;UBERON:0001017!1.01e-09!82;UBERON:0002346!1.37e-09!90;UBERON:0000073!2.79e-09!94;UBERON:0001016!2.79e-09!94;UBERON:0003080!3.35e-09!42;UBERON:0002780!1.82e-08!41;UBERON:0001890!1.82e-08!41;UBERON:0006240!1.82e-08!41;UBERON:0002020!6.02e-08!34;UBERON:0003528!6.02e-08!34;UBERON:0001893!7.45e-08!34;UBERON:0002791!2.72e-07!33 | |ontology_enrichment_uberon=UBERON:0007023!1.86e-42!115;UBERON:0001049!5.93e-14!57;UBERON:0005068!5.93e-14!57;UBERON:0006241!5.93e-14!57;UBERON:0007135!5.93e-14!57;UBERON:0002616!3.27e-12!59;UBERON:0005743!1.16e-10!86;UBERON:0003075!1.49e-10!86;UBERON:0007284!1.49e-10!86;UBERON:0000955!3.25e-10!69;UBERON:0006238!3.25e-10!69;UBERON:0002298!9.90e-10!8;UBERON:0001017!1.01e-09!82;UBERON:0002346!1.37e-09!90;UBERON:0000073!2.79e-09!94;UBERON:0001016!2.79e-09!94;UBERON:0003080!3.35e-09!42;UBERON:0002780!1.82e-08!41;UBERON:0001890!1.82e-08!41;UBERON:0006240!1.82e-08!41;UBERON:0002020!6.02e-08!34;UBERON:0003528!6.02e-08!34;UBERON:0001893!7.45e-08!34;UBERON:0002791!2.72e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;8.44e-08;6!UBERON:0000073;1.00e-07;53!UBERON:0002616;1.00e-07;53!UBERON:0004797;6.65e-07;4!UBERON:0000415;6.65e-07;4!UBERON:0007240;6.65e-07;4!UBERON:0005742;6.65e-07;4!UBERON:0005734;6.65e-07;4!UBERON:0004664;6.65e-07;4!UBERON:0004663;6.65e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.21e-21,114;UBERON:0001049,6.14e-12,56;UBERON:0005068,6.14e-12,56;UBERON:0006241,6.14e-12,56;UBERON:0007135,6.14e-12,56;UBERON:0000073,3.08e-11,53;UBERON:0002616,3.08e-11,53;UBERON:0004797,2.27e-10,7;UBERON:0003075,5.85e-09,82;UBERON:0007284,5.85e-09,82;UBERON:0000955,8.08e-09,68;UBERON:0006238,8.08e-09,68;UBERON:0002346,2.51e-08,86;UBERON:0003528,7.78e-08,34;UBERON:0002020,7.78e-08,34;UBERON:0002298,8.22e-08,6;UBERON:0001017,8.87e-08,81;UBERON:0002780,2.41e-07,41;UBERON:0001890,2.41e-07,41;UBERON:0003080,2.41e-07,41;UBERON:0006240,2.41e-07,41;UBERON:0000025,2.93e-07,192;UBERON:0010371,6.20e-07,104;UBERON:0002791,7.58e-07,32;UBERON:0000415,7.93e-07,4;UBERON:0007240,7.93e-07,4;UBERON:0005742,7.93e-07,4;UBERON:0005734,7.93e-07,4;UBERON:0004664,7.93e-07,4;UBERON:0004663,7.93e-07,4 | |||
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| ||
|short_description=p2@SLC1A7 | |short_description=p2@SLC1A7 | ||
}} | }} |
Latest revision as of 13:29, 18 September 2015
Short description: | p2@SLC1A7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC1A7_5end |
Coexpression cluster: | C3986_hepatoblastoma_gall_Mesenchymal_Natural_locus_tongue_mesothelioma |
Association with transcript: | 0bp_to_ENST00000488036, uc001cux.2_5end |
EntrezGene: | SLC1A7 |
HGNC: | 10945 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 1.51e-07 | 2 |
hepatic mesenchymal stem cell | 1.51e-07 | 2 |
fibroblast of tunica adventitia of artery | 7.93e-07 | 4 |
fibroblast of the aortic adventitia | 7.93e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.21e-21 | 114 |
neural tube | 6.14e-12 | 56 |
neural rod | 6.14e-12 | 56 |
future spinal cord | 6.14e-12 | 56 |
neural keel | 6.14e-12 | 56 |
regional part of nervous system | 3.08e-11 | 53 |
regional part of brain | 3.08e-11 | 53 |
blood vessel layer | 2.27e-10 | 7 |
neural plate | 5.85e-09 | 82 |
presumptive neural plate | 5.85e-09 | 82 |
brain | 8.08e-09 | 68 |
future brain | 8.08e-09 | 68 |
neurectoderm | 2.51e-08 | 86 |
brain grey matter | 7.78e-08 | 34 |
gray matter | 7.78e-08 | 34 |
brainstem | 8.22e-08 | 6 |
central nervous system | 8.87e-08 | 81 |
regional part of forebrain | 2.41e-07 | 41 |
forebrain | 2.41e-07 | 41 |
anterior neural tube | 2.41e-07 | 41 |
future forebrain | 2.41e-07 | 41 |
tube | 2.93e-07 | 192 |
ecto-epithelium | 6.20e-07 | 104 |
regional part of telencephalon | 7.58e-07 | 32 |
artery wall | 7.93e-07 | 4 |
tunica adventitia of artery | 7.93e-07 | 4 |
adventitia | 7.93e-07 | 4 |
tunica adventitia of blood vessel | 7.93e-07 | 4 |
aorta tunica adventitia | 7.93e-07 | 4 |
aorta wall | 7.93e-07 | 4 |