FFCP PHASE1:Hg19::chr20:20345188..20345217,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:20345188..20345217,+ | |||
|coexpression_cluster_id=C1864 | |||
|description=CAGE_peak_at_chr20:20345188..20345217,+ | |description=CAGE_peak_at_chr20:20345188..20345217,+ | ||
|id=chr20:20345188..20345217,+ | |id=chr20:20345188..20345217,+ | ||
|ontology_enrichment_celltype=CL:0000242!9.37e-21!2;CL:0002535!7.92e-20!2;CL:0000540!5.30e-15!6;CL:0000031!5.30e-15!6;CL:0000404!5.30e-15!6;CL:0000047!2.15e-11!8;CL:0002553!4.58e-11!1;CL:0002319!7.05e-09!25;CL:0000312!7.43e-09!5;CL:0000240!1.62e-07!6;CL:0000311!1.62e-07!6;CL:0000079!1.62e-07!6;CL:0000237!1.62e-07!6;CL:0000036!1.62e-07!6;CL:0000357!1.62e-07!6;CL:0000114!1.62e-07!6 | |ontology_enrichment_celltype=CL:0000242!9.37e-21!2;CL:0002535!7.92e-20!2;CL:0000540!5.30e-15!6;CL:0000031!5.30e-15!6;CL:0000404!5.30e-15!6;CL:0000047!2.15e-11!8;CL:0002553!4.58e-11!1;CL:0002319!7.05e-09!25;CL:0000312!7.43e-09!5;CL:0000240!1.62e-07!6;CL:0000311!1.62e-07!6;CL:0000079!1.62e-07!6;CL:0000237!1.62e-07!6;CL:0000036!1.62e-07!6;CL:0000357!1.62e-07!6;CL:0000114!1.62e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000123;5.99e-41;2!CL:0000242;5.99e-41;2!CL:0002553;6.98e-21;1!CL:0000312;4.64e-17;5!CL:0000240;2.18e-14;6!CL:0000311;2.18e-14;6!CL:0000079;2.18e-14;6!CL:0000237;2.18e-14;6!CL:0000540;4.84e-14;6!CL:0000404;4.84e-14;6!CL:0002319;3.85e-12;25!CL:0002535;2.88e-11;2!CL:0000362;6.48e-10;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.99e-41,2;CL:0002553,5.16e-21,1;CL:0000312,4.64e-17,5;CL:0000240,2.18e-14,6;CL:0000311,2.18e-14,6;CL:0000079,2.18e-14,6;CL:0000237,2.18e-14,6;CL:0000036,2.18e-14,6;CL:0000357,2.18e-14,6;CL:0000114,2.18e-14,6;CL:0000540,4.84e-14,6;CL:0000031,4.84e-14,6;CL:0000404,4.84e-14,6;CL:0002319,3.85e-12,25;CL:0002535,3.02e-11,2;CL:0000047,8.90e-11,8;CL:0000362,6.48e-10,9 | |||
|ontology_enrichment_development_v019=CL:0000357;2.18e-14;6!CL:0000114;2.18e-14;6!CL:0000031;4.84e-14;6 | |||
|ontology_enrichment_disease=DOID:4362!7.03e-18!5;DOID:305!3.19e-09!106 | |ontology_enrichment_disease=DOID:4362!7.03e-18!5;DOID:305!3.19e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:4362;5.24e-17;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,5.45e-17,5;DOID:305,6.05e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0006955!7.92e-20!2;UBERON:0004801!7.92e-20!2;UBERON:0000002!5.30e-15!6;UBERON:0001560!5.30e-15!6 | |ontology_enrichment_uberon=UBERON:0006955!7.92e-20!2;UBERON:0004801!7.92e-20!2;UBERON:0000002!5.30e-15!6;UBERON:0001560!5.30e-15!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0000002;2.41e-14;6!UBERON:0001560;2.41e-14;6!UBERON:0006955;2.88e-11;2!UBERON:0004801;2.88e-11;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,2.49e-14,6;UBERON:0001560,2.49e-14,6;UBERON:0006955,3.02e-11,2;UBERON:0004801,3.02e-11,2 | |||
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|short_description=p@chr20:20345188..20345217,+ | |short_description=p@chr20:20345188..20345217,+ | ||
}} | }} |
Latest revision as of 12:20, 28 July 2015
Short description: | p@chr20:20345188..20345217, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:20345188..20345217, + |
Coexpression cluster: | C1864_argyrophil_merkel_small_gastrointestinal_smallcell_migratory_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.99e-41 | 2 |
lung fibroblast | 5.16e-21 | 1 |
keratinocyte | 4.64e-17 | 5 |
stratified squamous epithelial cell | 2.18e-14 | 6 |
keratin accumulating cell | 2.18e-14 | 6 |
stratified epithelial cell | 2.18e-14 | 6 |
keratinizing barrier epithelial cell | 2.18e-14 | 6 |
epithelial fate stem cell | 2.18e-14 | 6 |
stratified epithelial stem cell | 2.18e-14 | 6 |
surface ectodermal cell | 2.18e-14 | 6 |
neuron | 4.84e-14 | 6 |
neuroblast | 4.84e-14 | 6 |
electrically signaling cell | 4.84e-14 | 6 |
neural cell | 3.85e-12 | 25 |
epithelial cell of cervix | 3.02e-11 | 2 |
neuronal stem cell | 8.90e-11 | 8 |
epidermal cell | 6.48e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 2.49e-14 | 6 |
neck of organ | 2.49e-14 | 6 |
uterine epithelium | 3.02e-11 | 2 |
cervix epithelium | 3.02e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 5.45e-17 | 5 |
carcinoma | 6.05e-09 | 106 |