FFCP PHASE1:Hg19::chr13:85937748..85937755,+: Difference between revisions
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|id=chr13:85937748..85937755,+
|short_description=p1@LINC00351
|description=CAGE_peak_1_at_LINC00351_5end
|association_with_transcript=12bp_to_ENST00000424926_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42669 | |HGNC=42669 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_ENST00000424926_5end | |||
|cluster_id=chr13:85937748..85937755,+ | |||
|description=CAGE_peak_1_at_LINC00351_5end | |||
|id=chr13:85937748..85937755,+ | |||
|ontology_enrichment_celltype=CL:0000181!8.61e-07!12;CL:0000417!8.61e-07!12;CL:0000668!8.61e-07!12;CL:0000414!8.61e-07!12;CL:0000412!8.61e-07!12;CL:0000182!8.61e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002149;4.66e-13;6!CL:0002255;4.66e-13;6!CL:1000415;1.57e-10;2!CL:0000054;3.13e-10;2!CL:0000137;3.13e-10;2!CL:0000092;3.13e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,4.52e-13,6;CL:0002255,4.52e-13,6;CL:1000415,1.57e-10,2;CL:0000054,2.72e-10,2;CL:0000137,2.72e-10,2;CL:0000092,2.72e-10,2 | |||
|ontology_enrichment_development_v019=UBERON:0005795;7.69e-17;10!UBERON:0009117;4.11e-08;10!UBERON:0005564;4.11e-08;10 | |||
|ontology_enrichment_disease=DOID:0060085!6.88e-10!1;DOID:3165!6.88e-10!1;DOID:0060121!6.88e-10!1;DOID:2438!6.88e-10!1;DOID:4418!6.88e-10!1;DOID:0050619!9.70e-10!1;DOID:1357!9.70e-10!1;DOID:5662!1.25e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:0060085;4.28e-19;1!DOID:3165;4.28e-19;1!DOID:0060121;4.28e-19;1!DOID:2438;4.28e-19;1!DOID:4418;4.28e-19;1!DOID:3001;4.66e-13;6!DOID:200;3.13e-10;2!DOID:4305;3.13e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,3.25e-19,1;DOID:3165,3.25e-19,1;DOID:0060121,3.25e-19,1;DOID:2438,3.25e-19,1;DOID:4418,3.25e-19,1;DOID:3001,4.52e-13,6;DOID:200,2.72e-10,2;DOID:4305,2.72e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0001896!1.08e-11!3;UBERON:0005290!1.08e-11!3;UBERON:0010096!1.08e-11!3;UBERON:0007195!4.46e-10!1;UBERON:0001282!5.31e-10!1;UBERON:0009842!5.31e-10!1;UBERON:0003704!5.31e-10!1;UBERON:0001171!5.31e-10!1;UBERON:0001172!5.31e-10!1;UBERON:0001764!9.70e-10!1;UBERON:0001825!9.70e-10!1;UBERON:0002363!2.46e-09!1;UBERON:0007647!2.46e-09!1;UBERON:0010115!2.46e-09!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;1.30e-19;1!UBERON:0001282;1.71e-19;1!UBERON:0009842;1.71e-19;1!UBERON:0003704;1.71e-19;1!UBERON:0001171;1.71e-19;1!UBERON:0001172;1.71e-19;1!UBERON:0005795;4.28e-19;1!UBERON:0002294;2.02e-11;7!UBERON:0001173;2.02e-11;7!UBERON:0000473;6.49e-10;8!UBERON:0003135;1.87e-07;11!UBERON:0002110;1.93e-07;3!UBERON:0001280;2.25e-07;3!UBERON:0004647;2.25e-07;3!UBERON:0002371;5.89e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,1.30e-19,1;UBERON:0001282,1.88e-19,1;UBERON:0009842,1.88e-19,1;UBERON:0003704,1.88e-19,1;UBERON:0001171,1.88e-19,1;UBERON:0001172,1.88e-19,1;UBERON:0000473,6.94e-10,8;UBERON:0002294,4.43e-09,9;UBERON:0001173,4.43e-09,9;UBERON:0004912,4.43e-09,9;UBERON:0005795,5.39e-08,22;UBERON:0002110,1.93e-07,3;UBERON:0006242,1.93e-07,3;UBERON:0003135,1.96e-07,11;UBERON:0001280,2.32e-07,3;UBERON:0004647,2.32e-07,3;UBERON:0005171,2.32e-07,3 | |||
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|short_description=p1@LINC00351 | |||
}} | }} |
Latest revision as of 03:27, 18 September 2015
Short description: | p1@LINC00351 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00351_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENST00000424926_5end |
EntrezGene: | NA |
HGNC: | 42669 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 4.52e-13 | 6 |
stromal cell of endometrium | 4.52e-13 | 6 |
epithelial cell of gall bladder | 1.57e-10 | 2 |
bone matrix secreting cell | 2.72e-10 | 2 |
osteocyte | 2.72e-10 | 2 |
osteoclast | 2.72e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 1.30e-19 | 1 |
intralobular bile duct | 1.88e-19 | 1 |
acinus | 1.88e-19 | 1 |
intrahepatic bile duct | 1.88e-19 | 1 |
portal lobule | 1.88e-19 | 1 |
hepatic acinus | 1.88e-19 | 1 |
testis | 6.94e-10 | 8 |
biliary system | 4.43e-09 | 9 |
biliary tree | 4.43e-09 | 9 |
biliary bud | 4.43e-09 | 9 |
embryonic uterus | 5.39e-08 | 22 |
gallbladder | 1.93e-07 | 3 |
gall bladder primordium | 1.93e-07 | 3 |
male reproductive organ | 1.96e-07 | 11 |
liver parenchyma | 2.32e-07 | 3 |
liver lobule | 2.32e-07 | 3 |
hepatic duct | 2.32e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 3.25e-19 | 1 |
skin benign neoplasm | 3.25e-19 | 1 |
integumentary system benign neoplasm | 3.25e-19 | 1 |
dermis tumor | 3.25e-19 | 1 |
cutaneous fibrous histiocytoma | 3.25e-19 | 1 |
female reproductive endometrioid cancer | 4.52e-13 | 6 |
giant cell tumor | 2.72e-10 | 2 |
bone giant cell tumor | 2.72e-10 | 2 |