FFCP PHASE1:Hg19::chr2:47747587..47747624,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:47747587..47747624,+ | |||
|description=CAGE_peak_at_chr2:47747587..47747624,+ | |description=CAGE_peak_at_chr2:47747587..47747624,+ | ||
|id=chr2:47747587..47747624,+ | |id=chr2:47747587..47747624,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000167;2.73e-29;1!CL:0000164;2.73e-29;1!CL:0000502;2.73e-29;1!CL:0000172;2.73e-29;1!CL:0000173;2.73e-29;1!CL:0000333;9.08e-24;5!CL:0002321;1.31e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,2.37e-29,1;CL:0000164,2.37e-29,1;CL:0000502,2.37e-29,1;CL:0000172,2.37e-29,1;CL:0000173,2.37e-29,1;CL:0002351,2.37e-29,1 | |||
|ontology_enrichment_development_v019=CL:0002351;2.73e-29;1 | |||
|ontology_enrichment_disease=DOID:2531!1.89e-11!51;DOID:0060083!1.89e-11!51;DOID:1240!8.68e-10!39;DOID:169!1.01e-09!6;DOID:171!1.07e-08!10;DOID:8692!2.35e-07!31 | |ontology_enrichment_disease=DOID:2531!1.89e-11!51;DOID:0060083!1.89e-11!51;DOID:1240!8.68e-10!39;DOID:169!1.01e-09!6;DOID:171!1.07e-08!10;DOID:8692!2.35e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:169;5.22e-43;6!DOID:4960;2.73e-29;1!DOID:0070004;2.73e-29;1!DOID:4430;2.73e-29;1!DOID:171;3.45e-26;10!DOID:3095;2.40e-12;22!DOID:2994;2.40e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,4.86e-43,6;DOID:4430,2.37e-29,1;DOID:4960,3.16e-29,1;DOID:0070004,3.16e-29,1;DOID:171,3.30e-26,10;DOID:3095,2.35e-12,22;DOID:2994,2.35e-12,22 | |||
|ontology_enrichment_uberon=UBERON:0001869!2.25e-11!32;UBERON:0002020!1.25e-10!34;UBERON:0003528!1.25e-10!34;UBERON:0001893!1.41e-10!34;UBERON:0002780!5.10e-10!41;UBERON:0001890!5.10e-10!41;UBERON:0006240!5.10e-10!41;UBERON:0003080!1.01e-09!42;UBERON:0000073!2.24e-09!94;UBERON:0001016!2.24e-09!94;UBERON:0002791!3.38e-09!33;UBERON:0001049!7.29e-09!57;UBERON:0005068!7.29e-09!57;UBERON:0006241!7.29e-09!57;UBERON:0007135!7.29e-09!57;UBERON:0000200!1.28e-08!6;UBERON:0002616!1.85e-08!59;UBERON:0003056!3.56e-08!61;UBERON:0000369!4.39e-08!4;UBERON:0002435!4.39e-08!4;UBERON:0000204!4.39e-08!4;UBERON:0010082!4.39e-08!4;UBERON:0001873!4.46e-08!2;UBERON:0010122!4.46e-08!2;UBERON:0000955!1.08e-07!69;UBERON:0006238!1.08e-07!69;UBERON:0002619!1.29e-07!22;UBERON:0005743!2.35e-07!86;UBERON:0002346!4.18e-07!90;UBERON:0001017!6.44e-07!82;UBERON:0000013!7.05e-07!5;UBERON:0002410!7.05e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;9.08e-24;5!UBERON:0002410;9.08e-24;5!UBERON:0000010;1.08e-13;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,9.08e-24,5;UBERON:0002410,9.08e-24,5;UBERON:0000010,1.08e-13,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.26069603191659,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.851692475380653,0.687010689511529,0.307240764308458,0.223676107892416,0.500547425135725,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,1.02314474045374,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,1.72371686620732,0,0.520874984799877,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0.234264445725339,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,0,0,0.0620964029413835,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320075189082423,1.03328987796489,0,0,0,0,5.37156359475337,0,2.83078695340614,0.109209638192014,0,0.425149840203366,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,1.64973582971138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.26940821205835,0,0,0,0.213454691755431,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.26069603191659,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.851692475380653,0.687010689511529,0.307240764308458,0.223676107892416,0.500547425135725,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,1.02314474045374,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,1.72371686620732,0,0.520874984799877,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0.234264445725339,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,0,0,0.0620964029413835,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320075189082423,1.03328987796489,0,0,0,0,5.37156359475337,0,2.83078695340614,0.109209638192014,0,0.425149840203366,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,1.64973582971138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.26940821205835,0,0,0,0.213454691755431,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:47747587..47747624,+ | |short_description=p@chr2:47747587..47747624,+ | ||
}} | }} |
Latest revision as of 10:36, 29 July 2015
Short description: | p@chr2:47747587..47747624, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:47747587..47747624, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 2.37e-29 | 1 |
enteroendocrine cell | 2.37e-29 | 1 |
type D enteroendocrine cell | 2.37e-29 | 1 |
somatostatin secreting cell | 2.37e-29 | 1 |
pancreatic D cell | 2.37e-29 | 1 |
progenitor cell of endocrine pancreas | 2.37e-29 | 1 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 9.08e-24 | 5 |
autonomic nervous system | 9.08e-24 | 5 |
peripheral nervous system | 1.08e-13 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 4.86e-43 | 6 |
somatostatinoma | 2.37e-29 | 1 |
bone marrow cancer | 3.16e-29 | 1 |
myeloma | 3.16e-29 | 1 |
neuroectodermal tumor | 3.30e-26 | 10 |
germ cell and embryonal cancer | 2.35e-12 | 22 |
germ cell cancer | 2.35e-12 | 22 |