FFCP PHASE1:Hg19::chr4:141264748..141264760,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=60592 | |EntrezGene=60592 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20335 | |HGNC=20335 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000506322_5end | |association_with_transcript=0bp_to_ENST00000506322_5end | ||
|cluster_id=chr4:141264748..141264760,+ | |||
|description=CAGE_peak_4_at_SCOC_5end | |description=CAGE_peak_4_at_SCOC_5end | ||
|id=chr4:141264748..141264760,+ | |id=chr4:141264748..141264760,+ | ||
|ontology_enrichment_celltype=CL:0000239!2.70e-09!3;CL:1000615!2.70e-09!3;CL:0002306!2.70e-09!3;CL:1000507!4.55e-08!12;CL:1000494!4.55e-08!12;CL:0000242!6.51e-07!2 | |ontology_enrichment_celltype=CL:0000239!2.70e-09!3;CL:1000615!2.70e-09!3;CL:0002306!2.70e-09!3;CL:1000507!4.55e-08!12;CL:1000494!4.55e-08!12;CL:0000242!6.51e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002178;5.49e-10;3!CL:0000239;1.66e-09;3!CL:1000615;1.66e-09;3!CL:0002306;1.66e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,5.01e-10,3;CL:0000239,1.74e-09,3;CL:1000615,1.74e-09,3;CL:0002306,1.74e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0006242;5.99e-08;1 | |||
|ontology_enrichment_disease=DOID:299!3.29e-17!25;DOID:305!2.19e-10!106;DOID:3119!2.51e-09!14;DOID:4468!1.90e-07!2;DOID:3493!2.22e-07!2;DOID:0050687!6.67e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:4468;7.66e-15;2!DOID:3493;1.20e-14;2!DOID:299;1.12e-12;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,7.93e-15,2;DOID:3493,1.12e-14,2;DOID:299,1.09e-12,25 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.36e-15!35;UBERON:0000160!6.31e-13!27;UBERON:0004921!3.56e-12!129;UBERON:0004185!3.56e-12!129;UBERON:0000058!2.44e-11!26;UBERON:0001007!1.15e-10!155;UBERON:0001555!1.15e-10!155;UBERON:0007026!1.15e-10!155;UBERON:0002294!1.53e-10!7;UBERON:0001173!1.53e-10!7;UBERON:0004912!1.53e-10!7;UBERON:0005177!4.15e-10!107;UBERON:0000466!2.27e-09!126;UBERON:0006853!2.70e-09!3;UBERON:0007685!2.70e-09!3;UBERON:0004134!2.70e-09!3;UBERON:0004119!3.78e-09!169;UBERON:0000925!3.78e-09!169;UBERON:0006595!3.78e-09!169;UBERON:0000059!5.47e-09!11;UBERON:0009773!4.55e-08!12;UBERON:0001231!4.55e-08!12;UBERON:0004810!4.55e-08!12;UBERON:0005172!4.65e-08!55;UBERON:0005173!4.65e-08!55;UBERON:0001155!5.15e-08!9;UBERON:0005911!1.08e-07!82;UBERON:0009497!1.60e-07!25;UBERON:0000015!1.60e-07!25;UBERON:0002423!1.60e-07!25;UBERON:0006235!1.60e-07!25;UBERON:0004161!1.60e-07!25;UBERON:0000007!2.09e-07!2;UBERON:0009569!2.10e-07!113;UBERON:0002394!2.10e-07!4;UBERON:0003928!2.10e-07!4;UBERON:0006555!2.15e-07!17;UBERON:0005103!2.15e-07!17;UBERON:0000083!2.15e-07!17;UBERON:0009201!2.15e-07!17;UBERON:0004819!2.15e-07!17;UBERON:0006553!2.15e-07!17;UBERON:0003074!2.15e-07!17;UBERON:0003060!2.15e-07!17;UBERON:0000077!2.58e-07!130;UBERON:0002113!3.69e-07!27;UBERON:0003918!3.69e-07!27;UBERON:0005095!3.69e-07!27;UBERON:0007687!3.69e-07!27;UBERON:0009856!3.89e-07!26;UBERON:0000489!3.92e-07!32;UBERON:0002417!6.09e-07!61;UBERON:0000916!6.09e-07!61;UBERON:0000080!6.34e-07!18;UBERON:0002120!6.34e-07!18;UBERON:0004875!6.34e-07!18;UBERON:0005721!6.34e-07!18;UBERON:0005754!6.34e-07!18;UBERON:0007297!6.34e-07!18 | |ontology_enrichment_uberon=UBERON:0005409!2.36e-15!35;UBERON:0000160!6.31e-13!27;UBERON:0004921!3.56e-12!129;UBERON:0004185!3.56e-12!129;UBERON:0000058!2.44e-11!26;UBERON:0001007!1.15e-10!155;UBERON:0001555!1.15e-10!155;UBERON:0007026!1.15e-10!155;UBERON:0002294!1.53e-10!7;UBERON:0001173!1.53e-10!7;UBERON:0004912!1.53e-10!7;UBERON:0005177!4.15e-10!107;UBERON:0000466!2.27e-09!126;UBERON:0006853!2.70e-09!3;UBERON:0007685!2.70e-09!3;UBERON:0004134!2.70e-09!3;UBERON:0004119!3.78e-09!169;UBERON:0000925!3.78e-09!169;UBERON:0006595!3.78e-09!169;UBERON:0000059!5.47e-09!11;UBERON:0009773!4.55e-08!12;UBERON:0001231!4.55e-08!12;UBERON:0004810!4.55e-08!12;UBERON:0005172!4.65e-08!55;UBERON:0005173!4.65e-08!55;UBERON:0001155!5.15e-08!9;UBERON:0005911!1.08e-07!82;UBERON:0009497!1.60e-07!25;UBERON:0000015!1.60e-07!25;UBERON:0002423!1.60e-07!25;UBERON:0006235!1.60e-07!25;UBERON:0004161!1.60e-07!25;UBERON:0000007!2.09e-07!2;UBERON:0009569!2.10e-07!113;UBERON:0002394!2.10e-07!4;UBERON:0003928!2.10e-07!4;UBERON:0006555!2.15e-07!17;UBERON:0005103!2.15e-07!17;UBERON:0000083!2.15e-07!17;UBERON:0009201!2.15e-07!17;UBERON:0004819!2.15e-07!17;UBERON:0006553!2.15e-07!17;UBERON:0003074!2.15e-07!17;UBERON:0003060!2.15e-07!17;UBERON:0000077!2.58e-07!130;UBERON:0002113!3.69e-07!27;UBERON:0003918!3.69e-07!27;UBERON:0005095!3.69e-07!27;UBERON:0007687!3.69e-07!27;UBERON:0009856!3.89e-07!26;UBERON:0000489!3.92e-07!32;UBERON:0002417!6.09e-07!61;UBERON:0000916!6.09e-07!61;UBERON:0000080!6.34e-07!18;UBERON:0002120!6.34e-07!18;UBERON:0004875!6.34e-07!18;UBERON:0005721!6.34e-07!18;UBERON:0005754!6.34e-07!18;UBERON:0007297!6.34e-07!18 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.06e-27;22!UBERON:0002108;5.22e-22;4!UBERON:0000160;1.49e-17;17!UBERON:0004921;3.63e-16;33!UBERON:0000007;8.79e-15;2!UBERON:0000945;1.49e-12;5!UBERON:0010039;1.49e-12;5!UBERON:0000058;6.56e-11;10!UBERON:0002114;6.14e-10;2!UBERON:0006853;1.66e-09;3!UBERON:0007685;1.66e-09;3!UBERON:0004134;1.66e-09;3!UBERON:0002294;2.25e-09;7!UBERON:0001173;2.25e-09;7!UBERON:0004913;3.34e-08;1!UBERON:0003703;3.34e-08;1!UBERON:0001174;3.34e-08;1!UBERON:0004914;3.34e-08;1!UBERON:0002394;6.53e-08;4!UBERON:0003928;6.53e-08;4!UBERON:0003296;8.01e-08;4!UBERON:0010133;8.01e-08;4!UBERON:0001301;9.61e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.61e-24,25;UBERON:0002108,4.95e-22,4;UBERON:0000160,1.57e-17,17;UBERON:0000007,9.74e-15,2;UBERON:0002114,6.00e-10,2;UBERON:0006853,1.74e-09,3;UBERON:0007685,1.74e-09,3;UBERON:0004134,1.74e-09,3;UBERON:0002113,1.43e-08,26;UBERON:0003918,1.43e-08,26;UBERON:0011143,1.43e-08,26;UBERON:0005095,1.43e-08,26;UBERON:0007687,1.43e-08,26;UBERON:0004921,3.01e-08,118;UBERON:0004913,3.34e-08,1;UBERON:0003703,3.34e-08,1;UBERON:0001174,3.34e-08,1;UBERON:0004914,3.34e-08,1;UBERON:0000945,4.68e-08,8;UBERON:0010039,4.68e-08,8;UBERON:0003296,8.42e-08,4;UBERON:0010133,8.42e-08,4;UBERON:0001301,9.94e-08,1;UBERON:0002294,2.17e-07,9;UBERON:0001173,2.17e-07,9;UBERON:0004912,2.17e-07,9;UBERON:0001007,2.60e-07,145;UBERON:0001555,2.60e-07,145;UBERON:0007026,2.60e-07,145;UBERON:0000489,4.19e-07,31 | |||
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| ||
|short_description=p4@SCOC | |short_description=p4@SCOC | ||
}} | }} |
Latest revision as of 19:31, 15 September 2015
Short description: | p4@SCOC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCOC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000506322_5end |
EntrezGene: | SCOC |
HGNC: | 20335 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 5.01e-10 | 3 |
brush border epithelial cell | 1.74e-09 | 3 |
kidney cortex tubule cell | 1.74e-09 | 3 |
epithelial cell of proximal tubule | 1.74e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 4.61e-24 | 25 |
small intestine | 4.95e-22 | 4 |
intestine | 1.57e-17 | 17 |
pituitary gland | 9.74e-15 | 2 |
duodenum | 6.00e-10 | 2 |
renal cortex tubule | 1.74e-09 | 3 |
region of nephron tubule | 1.74e-09 | 3 |
proximal tubule | 1.74e-09 | 3 |
kidney | 1.43e-08 | 26 |
kidney mesenchyme | 1.43e-08 | 26 |
upper urinary tract | 1.43e-08 | 26 |
kidney rudiment | 1.43e-08 | 26 |
kidney field | 1.43e-08 | 26 |
subdivision of digestive tract | 3.01e-08 | 118 |
hepatopancreatic ampulla | 3.34e-08 | 1 |
extrahepatic bile duct | 3.34e-08 | 1 |
common bile duct | 3.34e-08 | 1 |
duodenal papilla | 3.34e-08 | 1 |
stomach | 4.68e-08 | 8 |
food storage organ | 4.68e-08 | 8 |
gland of diencephalon | 8.42e-08 | 4 |
neuroendocrine gland | 8.42e-08 | 4 |
epididymis | 9.94e-08 | 1 |
biliary system | 2.17e-07 | 9 |
biliary tree | 2.17e-07 | 9 |
biliary bud | 2.17e-07 | 9 |
digestive system | 2.60e-07 | 145 |
digestive tract | 2.60e-07 | 145 |
primitive gut | 2.60e-07 | 145 |
cavitated compound organ | 4.19e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 7.93e-15 | 2 |
signet ring cell adenocarcinoma | 1.12e-14 | 2 |
adenocarcinoma | 1.09e-12 | 25 |