FFCP PHASE1:Hg19::chr4:42400017..42400037,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=152573 | |EntrezGene=152573 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25159 | |HGNC=25159 | ||
|TSSclassifier=strong | |||
|UniProt=A0PJX4 | |UniProt=A0PJX4 | ||
|association_with_transcript=161bp_to_ENST00000319234,NM_001080505,uc003gwp.2_5end | |association_with_transcript=161bp_to_ENST00000319234,NM_001080505,uc003gwp.2_5end | ||
|cluster_id=chr4:42400017..42400037,+ | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_4_at_SHISA3_5end | |description=CAGE_peak_4_at_SHISA3_5end | ||
|id=chr4:42400017..42400037,+ | |id=chr4:42400017..42400037,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;9.86e-18;2!CL:0000333;5.35e-08;5!CL:0002188;6.78e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,6.55e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.58e-34;1!UBERON:0006965;9.86e-18;2!UBERON:0005062;1.50e-09;4!UBERON:0007284;1.50e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;7.17e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,7.17e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0003103!9.44e-12!69;UBERON:0004573!8.92e-11!33;UBERON:0004571!8.92e-11!33;UBERON:0004872!1.68e-10!84;UBERON:0003914!1.70e-10!118;UBERON:0001637!2.98e-10!42;UBERON:0003509!2.98e-10!42;UBERON:0004572!2.98e-10!42;UBERON:0007100!5.16e-10!27;UBERON:0001009!1.15e-09!113;UBERON:0001981!3.04e-09!60;UBERON:0007500!3.04e-09!60;UBERON:0004537!3.04e-09!60;UBERON:0006965!3.04e-09!60;UBERON:0007023!7.52e-09!115;UBERON:0000055!1.72e-08!69;UBERON:0002049!1.21e-07!79;UBERON:0007798!1.21e-07!79;UBERON:0000947!1.34e-07!21;UBERON:0010191!1.34e-07!21;UBERON:0000477!1.80e-07!286;UBERON:0004535!1.99e-07!110;UBERON:0004111!2.37e-07!241;UBERON:0000468!5.61e-07!659 | |ontology_enrichment_uberon=UBERON:0003103!9.44e-12!69;UBERON:0004573!8.92e-11!33;UBERON:0004571!8.92e-11!33;UBERON:0004872!1.68e-10!84;UBERON:0003914!1.70e-10!118;UBERON:0001637!2.98e-10!42;UBERON:0003509!2.98e-10!42;UBERON:0004572!2.98e-10!42;UBERON:0007100!5.16e-10!27;UBERON:0001009!1.15e-09!113;UBERON:0001981!3.04e-09!60;UBERON:0007500!3.04e-09!60;UBERON:0004537!3.04e-09!60;UBERON:0006965!3.04e-09!60;UBERON:0007023!7.52e-09!115;UBERON:0000055!1.72e-08!69;UBERON:0002049!1.21e-07!79;UBERON:0007798!1.21e-07!79;UBERON:0000947!1.34e-07!21;UBERON:0010191!1.34e-07!21;UBERON:0000477!1.80e-07!286;UBERON:0004535!1.99e-07!110;UBERON:0004111!2.37e-07!241;UBERON:0000468!5.61e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0002135;5.97e-34;1!UBERON:0002133;9.86e-18;2!UBERON:0003978;2.74e-12;3!UBERON:0000946;2.74e-12;3!UBERON:0000013;5.35e-08;5!UBERON:0002410;5.35e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002135,3.61e-34,1;UBERON:0002133,7.67e-18,2;UBERON:0003978,2.31e-12,3;UBERON:0009751,2.31e-12,3;UBERON:0000946,2.31e-12,3;UBERON:0002523,2.31e-12,3;UBERON:0005983,2.31e-12,3;UBERON:0002165,2.31e-12,3;UBERON:0002062,2.31e-12,3;UBERON:0007280,2.31e-12,3;UBERON:0000013,5.35e-08,5;UBERON:0002410,5.35e-08,5 | |||
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| ||
|short_description=p4@SHISA3 | |short_description=p4@SHISA3 | ||
}} | }} |
Latest revision as of 20:14, 17 September 2015
Short description: | p4@SHISA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SHISA3_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 161bp_to_ENST00000319234, NM_001080505, uc003gwp.2_5end |
EntrezGene: | SHISA3 |
HGNC: | 25159 |
UniProt: | A0PJX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 6.55e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
mitral valve | 3.61e-34 | 1 |
atrioventricular valve | 7.67e-18 | 2 |
valve | 2.31e-12 | 3 |
cardiac mesenchyme | 2.31e-12 | 3 |
cardial valve | 2.31e-12 | 3 |
tunica intima | 2.31e-12 | 3 |
heart layer | 2.31e-12 | 3 |
endocardium | 2.31e-12 | 3 |
endocardial cushion | 2.31e-12 | 3 |
presumptive endocardium | 2.31e-12 | 3 |
sympathetic nervous system | 5.35e-08 | 5 |
autonomic nervous system | 5.35e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 7.17e-07 | 6 |