FFCP PHASE1:Hg19::chr5:55033872..55033896,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54514 | |EntrezGene=54514 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18700 | |HGNC=18700 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000508580_5end | |association_with_transcript=0bp_to_ENST00000508580_5end | ||
|cluster_id=chr5:55033872..55033896,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_DDX4_5end | |description=CAGE_peak_1_at_DDX4_5end | ||
|id=chr5:55033872..55033896,+ | |id=chr5:55033872..55033896,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.69e-13!7;CL:0000586!1.69e-13!7 | |ontology_enrichment_celltype=CL:0000039!1.69e-13!7;CL:0000586!1.69e-13!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;6.04e-07;7!CL:0000586;6.04e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.04e-07,7;CL:0000586,6.04e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.70e-36;10!UBERON:0005564;2.70e-36;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003135!1.73e-71!11;UBERON:0000473!2.27e-44!8;UBERON:0003101!6.61e-36!22;UBERON:0000079!6.61e-36!22;UBERON:0000989!3.28e-23!1;UBERON:0008811!3.28e-23!1;UBERON:0006258!3.28e-23!1;UBERON:0005876!3.28e-23!1;UBERON:0004874!3.28e-23!1;UBERON:0001301!4.10e-23!1;UBERON:0000991!2.93e-17!21;UBERON:0009196!2.93e-17!21;UBERON:0009117!2.93e-17!21;UBERON:0005564!2.93e-17!21;UBERON:0003133!1.53e-16!48;UBERON:0004176!1.70e-16!22;UBERON:0005156!1.81e-13!59;UBERON:0000990!1.81e-13!59;UBERON:0001873!3.24e-12!2;UBERON:0010122!3.24e-12!2;UBERON:0003886!6.11e-09!63;UBERON:0006947!1.30e-08!3;UBERON:0004054!1.30e-08!3;UBERON:0005383!1.40e-08!3;UBERON:0005382!1.40e-08!3;UBERON:0002323!4.29e-08!46;UBERON:0002553!4.67e-08!70;UBERON:0004458!1.28e-07!49;UBERON:0005904!9.11e-07!4;UBERON:0000369!9.63e-07!4;UBERON:0002435!9.63e-07!4;UBERON:0000204!9.63e-07!4;UBERON:0010082!9.63e-07!4 | |ontology_enrichment_uberon=UBERON:0003135!1.73e-71!11;UBERON:0000473!2.27e-44!8;UBERON:0003101!6.61e-36!22;UBERON:0000079!6.61e-36!22;UBERON:0000989!3.28e-23!1;UBERON:0008811!3.28e-23!1;UBERON:0006258!3.28e-23!1;UBERON:0005876!3.28e-23!1;UBERON:0004874!3.28e-23!1;UBERON:0001301!4.10e-23!1;UBERON:0000991!2.93e-17!21;UBERON:0009196!2.93e-17!21;UBERON:0009117!2.93e-17!21;UBERON:0005564!2.93e-17!21;UBERON:0003133!1.53e-16!48;UBERON:0004176!1.70e-16!22;UBERON:0005156!1.81e-13!59;UBERON:0000990!1.81e-13!59;UBERON:0001873!3.24e-12!2;UBERON:0010122!3.24e-12!2;UBERON:0003886!6.11e-09!63;UBERON:0006947!1.30e-08!3;UBERON:0004054!1.30e-08!3;UBERON:0005383!1.40e-08!3;UBERON:0005382!1.40e-08!3;UBERON:0002323!4.29e-08!46;UBERON:0002553!4.67e-08!70;UBERON:0004458!1.28e-07!49;UBERON:0005904!9.11e-07!4;UBERON:0000369!9.63e-07!4;UBERON:0002435!9.63e-07!4;UBERON:0000204!9.63e-07!4;UBERON:0010082!9.63e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.34e-45;8!UBERON:0005795;3.30e-40;1!UBERON:0003135;4.29e-33;11!UBERON:0000991;8.29e-18;21!UBERON:0003101;4.85e-17;22!UBERON:0000079;4.85e-17;22!UBERON:0002050;3.49e-09;5!UBERON:0005423;3.49e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.34e-45,8;UBERON:0003135,4.29e-33,11;UBERON:0000991,8.29e-18,21;UBERON:0009196,8.29e-18,21;UBERON:0009117,8.29e-18,21;UBERON:0005564,8.29e-18,21;UBERON:0004176,4.85e-17,22;UBERON:0003101,4.85e-17,22;UBERON:0000079,4.85e-17,22;UBERON:0002323,1.40e-08,46;UBERON:0003133,2.96e-08,48;UBERON:0004458,4.22e-08,49;UBERON:0003886,2.03e-07,54;UBERON:0005156,7.53e-07,59;UBERON:0000990,7.53e-07,59 | |||
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|short_description=p1@DDX4 | |short_description=p1@DDX4 | ||
}} | }} |
Latest revision as of 04:23, 18 September 2015
Short description: | p1@DDX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DDX4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000508580_5end |
EntrezGene: | DDX4 |
HGNC: | 18700 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.04e-07 | 7 |
germ cell | 6.04e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 4.34e-45 | 8 |
male reproductive organ | 4.29e-33 | 11 |
gonad | 8.29e-18 | 21 |
indifferent external genitalia | 8.29e-18 | 21 |
indifferent gonad | 8.29e-18 | 21 |
gonad primordium | 8.29e-18 | 21 |
external genitalia | 4.85e-17 | 22 |
male organism | 4.85e-17 | 22 |
male reproductive system | 4.85e-17 | 22 |
body cavity | 1.40e-08 | 46 |
reproductive organ | 2.96e-08 | 48 |
body cavity or lining | 4.22e-08 | 49 |
body cavity precursor | 2.03e-07 | 54 |
reproductive structure | 7.53e-07 | 59 |
reproductive system | 7.53e-07 | 59 |