FFCP PHASE1:Hg19::chr15:67356817..67356830,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:67356817..67356830,+
|short_description=p@chr15:67356817..67356830,+
|description=CAGE_peak_at_chr15:67356817..67356830,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr15:67356817..67356830,+ | |||
|description=CAGE_peak_at_chr15:67356817..67356830,+ | |||
|id=chr15:67356817..67356830,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.79e-08!254;CL:1000497!2.21e-07!18;CL:0002518!2.21e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.15e-15;17!CL:0002518;2.15e-15;17!CL:0000319;3.58e-09;1!CL:1001319;5.70e-09;1!CL:1000600;5.70e-09;1!CL:0002563;3.22e-08;4!CL:1000449;4.46e-08;15!CL:1000507;4.27e-07;10!CL:1000494;4.27e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,1.87e-15,17;CL:0002518,1.87e-15,17;CL:0000319,3.31e-09,1;CL:1001319,6.65e-09,1;CL:1000600,6.65e-09,1;CL:0002563,2.88e-08,4;CL:1000449,3.87e-08,15;CL:1000507,3.64e-07,10;CL:1000494,3.64e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0003104;2.61e-11;31!UBERON:0004161;8.70e-07;11 | |||
|ontology_enrichment_disease=DOID:305!3.15e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3030;3.58e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,3.31e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0006554!1.68e-07!44;UBERON:0001008!3.29e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;6.91e-12;29!UBERON:0006554;1.83e-11;30!UBERON:0001008;1.83e-11;30!UBERON:0002113;9.23e-11;24!UBERON:0011143;9.23e-11;24!UBERON:0004645;5.70e-09;1!UBERON:0001256;5.70e-09;1!UBERON:0001259;5.70e-09;1!UBERON:0003350;7.07e-09;8!UBERON:0001052;2.18e-08;4!UBERON:0001242;3.22e-08;4!UBERON:0001262;3.22e-08;4!UBERON:0004786;3.22e-08;4!UBERON:0004808;3.22e-08;4!UBERON:0001277;3.22e-08;4!UBERON:0006555;4.46e-08;15!UBERON:0004819;4.46e-08;15!UBERON:0001285;4.46e-08;15!UBERON:0007684;4.46e-08;15!UBERON:0005172;1.14e-07;52!UBERON:0005173;1.14e-07;52!UBERON:0004211;4.27e-07;10!UBERON:0009773;4.27e-07;10!UBERON:0001231;4.27e-07;10!UBERON:0004810;4.27e-07;10!UBERON:0004907;7.15e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,4.31e-11,31;UBERON:0005172,6.17e-10,54;UBERON:0005173,6.17e-10,54;UBERON:0002113,6.22e-10,26;UBERON:0003918,6.22e-10,26;UBERON:0011143,6.22e-10,26;UBERON:0005095,6.22e-10,26;UBERON:0007687,6.22e-10,26;UBERON:0004645,6.65e-09,1;UBERON:0001256,6.65e-09,1;UBERON:0001259,6.65e-09,1;UBERON:0003350,6.89e-09,8;UBERON:0002417,8.36e-09,60;UBERON:0000916,8.36e-09,60;UBERON:0001052,2.40e-08,4;UBERON:0001242,2.88e-08,4;UBERON:0001262,2.88e-08,4;UBERON:0004786,2.88e-08,4;UBERON:0004808,2.88e-08,4;UBERON:0001277,2.88e-08,4;UBERON:0004211,3.87e-08,15;UBERON:0009773,3.87e-08,15;UBERON:0001231,3.87e-08,15;UBERON:0001285,3.87e-08,15;UBERON:0007684,3.87e-08,15;UBERON:0004208,3.87e-08,15;UBERON:0006555,1.23e-07,16;UBERON:0004819,1.23e-07,16;UBERON:0004810,3.64e-07,10;UBERON:0006554,4.89e-07,47;UBERON:0001008,7.13e-07,48;UBERON:0004907,7.70e-07,5 | |||
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| ||
|short_description=p@chr15:67356817..67356830,+ | |||
}} | }} |
Latest revision as of 03:35, 25 July 2015
Short description: | p@chr15:67356817..67356830, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr15:67356817..67356830, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 1.87e-15 | 17 |
kidney epithelial cell | 1.87e-15 | 17 |
mucus secreting cell | 3.31e-09 | 1 |
bladder cell | 6.65e-09 | 1 |
lower urinary tract cell | 6.65e-09 | 1 |
intestinal epithelial cell | 2.88e-08 | 4 |
epithelial cell of nephron | 3.87e-08 | 15 |
kidney tubule cell | 3.64e-07 | 10 |
nephron tubule epithelial cell | 3.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 4.31e-11 | 31 |
abdomen element | 6.17e-10 | 54 |
abdominal segment element | 6.17e-10 | 54 |
kidney | 6.22e-10 | 26 |
kidney mesenchyme | 6.22e-10 | 26 |
upper urinary tract | 6.22e-10 | 26 |
kidney rudiment | 6.22e-10 | 26 |
kidney field | 6.22e-10 | 26 |
urinary bladder urothelium | 6.65e-09 | 1 |
wall of urinary bladder | 6.65e-09 | 1 |
mucosa of urinary bladder | 6.65e-09 | 1 |
epithelium of mucosa | 6.89e-09 | 8 |
abdominal segment of trunk | 8.36e-09 | 60 |
abdomen | 8.36e-09 | 60 |
rectum | 2.40e-08 | 4 |
intestinal mucosa | 2.88e-08 | 4 |
wall of intestine | 2.88e-08 | 4 |
gastrointestinal system mucosa | 2.88e-08 | 4 |
gastrointestinal system epithelium | 2.88e-08 | 4 |
intestinal epithelium | 2.88e-08 | 4 |
nephron epithelium | 3.87e-08 | 15 |
renal tubule | 3.87e-08 | 15 |
nephron tubule | 3.87e-08 | 15 |
nephron | 3.87e-08 | 15 |
uriniferous tubule | 3.87e-08 | 15 |
nephrogenic mesenchyme | 3.87e-08 | 15 |
excretory tube | 1.23e-07 | 16 |
kidney epithelium | 1.23e-07 | 16 |
nephron tubule epithelium | 3.64e-07 | 10 |
urinary system structure | 4.89e-07 | 47 |
renal system | 7.13e-07 | 48 |
lower digestive tract | 7.70e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 3.31e-09 | 1 |