FFCP PHASE1:Hg19::chr7:2106220..2106240,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:2106220..2106240,- | |||
|coexpression_cluster_id=C580 | |||
|description=CAGE_peak_at_chr7:2106220..2106240,- | |description=CAGE_peak_at_chr7:2106220..2106240,- | ||
|id=chr7:2106220..2106240,- | |id=chr7:2106220..2106240,- | ||
|ontology_enrichment_celltype=CL:0000542!9.89e-37!53;CL:0000051!9.89e-37!53;CL:0000838!2.42e-34!52;CL:0000084!4.77e-32!25;CL:0000827!4.77e-32!25;CL:0000791!2.05e-28!18;CL:0000789!2.05e-28!18;CL:0002420!2.05e-28!18;CL:0002419!2.05e-28!18;CL:0000790!2.05e-28!18;CL:0002087!4.54e-17!119;CL:0000624!2.98e-16!6;CL:0000625!3.00e-16!11;CL:0000738!6.23e-15!140;CL:0000037!4.08e-13!172;CL:0000566!4.08e-13!172;CL:0000898!3.22e-12!3;CL:0000988!5.13e-12!182;CL:0000842!7.51e-12!3;CL:0000623!8.42e-12!3;CL:0000825!8.42e-12!3;CL:0002031!5.30e-11!124;CL:0000224!5.26e-09!4;CL:0000815!7.72e-09!2;CL:0000792!7.72e-09!2;CL:0002677!7.72e-09!2;CL:0002032!9.87e-09!165;CL:0000837!9.87e-09!165;CL:0000236!4.99e-07!14 | |ontology_enrichment_celltype=CL:0000542!9.89e-37!53;CL:0000051!9.89e-37!53;CL:0000838!2.42e-34!52;CL:0000084!4.77e-32!25;CL:0000827!4.77e-32!25;CL:0000791!2.05e-28!18;CL:0000789!2.05e-28!18;CL:0002420!2.05e-28!18;CL:0002419!2.05e-28!18;CL:0000790!2.05e-28!18;CL:0002087!4.54e-17!119;CL:0000624!2.98e-16!6;CL:0000625!3.00e-16!11;CL:0000738!6.23e-15!140;CL:0000037!4.08e-13!172;CL:0000566!4.08e-13!172;CL:0000898!3.22e-12!3;CL:0000988!5.13e-12!182;CL:0000842!7.51e-12!3;CL:0000623!8.42e-12!3;CL:0000825!8.42e-12!3;CL:0002031!5.30e-11!124;CL:0000224!5.26e-09!4;CL:0000815!7.72e-09!2;CL:0000792!7.72e-09!2;CL:0002677!7.72e-09!2;CL:0002032!9.87e-09!165;CL:0000837!9.87e-09!165;CL:0000236!4.99e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002032;6.42e-13;1!CL:0000817;6.42e-13;1!CL:0000557;6.42e-13;1!CL:0000084;1.11e-11;25!CL:0000624;1.17e-08;6!CL:0000815;4.29e-07;2!CL:0000792;4.29e-07;2!CL:0002677;4.29e-07;2!CL:0000542;5.95e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.10e-11,25;CL:0000827,1.10e-11,25;CL:0000838,1.90e-10,52;CL:0000542,3.07e-10,53;CL:0000051,3.07e-10,53;CL:0000624,1.31e-08,6;CL:0000815,4.42e-07,2;CL:0000792,4.42e-07,2;CL:0002677,4.42e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006965;4.29e-07;2!CL:0000051;5.95e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!6.49e-10!4;UBERON:0005058!6.49e-10!4;UBERON:0009113!6.49e-10!4;UBERON:0003295!6.49e-10!4;UBERON:0005562!6.49e-10!4;UBERON:0004177!1.50e-09!7;UBERON:0003351!9.88e-07!6 | |ontology_enrichment_uberon=UBERON:0002370!6.49e-10!4;UBERON:0005058!6.49e-10!4;UBERON:0009113!6.49e-10!4;UBERON:0003295!6.49e-10!4;UBERON:0005562!6.49e-10!4;UBERON:0004177!1.50e-09!7;UBERON:0003351!9.88e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.38e-25;2!UBERON:0005058;4.38e-25;2!UBERON:0009113;4.38e-25;2!UBERON:0004177;1.27e-10;5!UBERON:0005057;1.27e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.78e-13,4;UBERON:0005058,4.78e-13,4;UBERON:0009113,4.78e-13,4;UBERON:0003295,4.78e-13,4;UBERON:0005562,4.78e-13,4;UBERON:0003351,5.35e-09,6;UBERON:0004177,7.81e-08,7;UBERON:0005057,7.81e-08,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0.954053754535364,0,0.587237189370939,1.91136614062614,0,0.560508562981536,0.526768169550154,0,1.17903228824749,0.616804496998528,0.501559486172034,1.30368906653436,0.946895611469467,0,0,0.294605907474837,0,0,0,0,1.15106533222573,0.276350017785848,0,2.22429844743091,1.60524496853828,3.1360657141493,0.113309342697566,0.383220493601921,0.68725489096526,0,0.637130828648193,0.651083453856419,0,0.150575119077773,0.383959833463255,0,0,0.821127996921047,0.201606743224732,0,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29755719297581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0.371606350251437,1.73123055571734,3.41480848072388,1.75368900001705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70975570501128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.644578879735772,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.45889098360061,4.03485642923076,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,1.40891655513718,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0.954053754535364,0,0.587237189370939,1.91136614062614,0,0.560508562981536,0.526768169550154,0,1.17903228824749,0.616804496998528,0.501559486172034,1.30368906653436,0.946895611469467,0,0,0.294605907474837,0,0,0,0,1.15106533222573,0.276350017785848,0,2.22429844743091,1.60524496853828,3.1360657141493,0.113309342697566,0.383220493601921,0.68725489096526,0,0.637130828648193,0.651083453856419,0,0.150575119077773,0.383959833463255,0,0,0.821127996921047,0.201606743224732,0,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29755719297581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0.371606350251437,1.73123055571734,3.41480848072388,1.75368900001705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70975570501128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.644578879735772,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.45889098360061,4.03485642923076,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,1.40891655513718,0 | ||
|short_description=p@chr7:2106220..2106240,- | |short_description=p@chr7:2106220..2106240,- | ||
}} | }} |
Latest revision as of 08:29, 31 July 2015
Short description: | p@chr7:2106220..2106240, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:2106220..2106240, - |
Coexpression cluster: | C580_chronic_thymus_Hodgkin_acute_iPS_vein_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.10e-11 | 25 |
pro-T cell | 1.10e-11 | 25 |
lymphoid lineage restricted progenitor cell | 1.90e-10 | 52 |
lymphocyte | 3.07e-10 | 53 |
common lymphoid progenitor | 3.07e-10 | 53 |
CD4-positive, alpha-beta T cell | 1.31e-08 | 6 |
regulatory T cell | 4.42e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.42e-07 | 2 |
naive regulatory T cell | 4.42e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.78e-13 | 4 |
hemolymphoid system gland | 4.78e-13 | 4 |
thymic region | 4.78e-13 | 4 |
pharyngeal gland | 4.78e-13 | 4 |
thymus primordium | 4.78e-13 | 4 |
pharyngeal epithelium | 5.35e-09 | 6 |
hemopoietic organ | 7.81e-08 | 7 |
immune organ | 7.81e-08 | 7 |