FFCP PHASE1:Hg19::chr8:102504932..102504952,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79977 | |EntrezGene=79977 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2799 | |HGNC=2799 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-33bp_to_ENST00000395927_5end | |association_with_transcript=-33bp_to_ENST00000395927_5end | ||
|cluster_id=chr8:102504932..102504952,+ | |||
|coexpression_cluster_id=C1541 | |||
|description=CAGE_peak_4_at_GRHL2_5end | |description=CAGE_peak_4_at_GRHL2_5end | ||
|id=chr8:102504932..102504952,+ | |id=chr8:102504932..102504952,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.80e-22!254;CL:0002076!7.09e-20!43;CL:0000223!1.86e-14!59;CL:0002251!2.60e-11!21;CL:0002368!9.88e-08!13;CL:0002159!3.42e-07!13 | |ontology_enrichment_celltype=CL:0000066!9.80e-22!254;CL:0002076!7.09e-20!43;CL:0000223!1.86e-14!59;CL:0002251!2.60e-11!21;CL:0002368!9.88e-08!13;CL:0002159!3.42e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000349;6.28e-13;19!CL:0002251;5.83e-11;20!CL:0002076;2.03e-10;42!CL:0002536;6.01e-08;2!CL:0002537;6.47e-07;5!CL:0000575;6.96e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.93e-13,19;CL:0002076,7.25e-13,42;CL:0000066,3.24e-12,253;CL:0002251,5.18e-11,20;CL:0000223,1.14e-09,58;CL:0002536,6.25e-08,2;CL:0000076,8.66e-08,63;CL:0002537,6.76e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0007297;3.07e-07;2 | |||
|ontology_enrichment_disease=DOID:305!1.81e-18!106;DOID:1749!2.44e-18!14;DOID:0050687!5.65e-13!143;DOID:299!6.29e-10!25;DOID:5093!9.54e-07!4;DOID:1612!9.54e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.39e-25;14!DOID:299;3.91e-08;25!DOID:5093;3.12e-07;4!DOID:1612;3.12e-07;4!DOID:7;5.15e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.60e-26,14;DOID:305,1.08e-18,106;DOID:0050687,6.83e-12,143;DOID:7,4.09e-09,39;DOID:299,5.82e-08,25;DOID:5093,2.93e-07,4;DOID:1612,2.93e-07,4;DOID:162,9.34e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.52e-19!169;UBERON:0000925!1.52e-19!169;UBERON:0006595!1.52e-19!169;UBERON:0001007!3.33e-15!155;UBERON:0001555!3.33e-15!155;UBERON:0007026!3.33e-15!155;UBERON:0005631!1.10e-13!14;UBERON:0000158!1.10e-13!14;UBERON:0001004!4.87e-13!72;UBERON:0000077!1.30e-12!130;UBERON:0000344!4.93e-12!12;UBERON:0000161!1.04e-11!35;UBERON:0005911!3.97e-11!82;UBERON:0004921!1.02e-10!129;UBERON:0004185!1.02e-10!129;UBERON:0000464!1.40e-10!104;UBERON:0005153!2.05e-10!37;UBERON:0005178!2.58e-09!34;UBERON:0002224!2.58e-09!34;UBERON:0000466!5.03e-09!126;UBERON:0003729!5.80e-09!5;UBERON:0005181!6.51e-09!35;UBERON:0000915!7.26e-09!52;UBERON:0003124!1.03e-08!7;UBERON:0000065!1.94e-08!53;UBERON:0000478!3.82e-08!24;UBERON:0005157!5.86e-08!51;UBERON:0000166!9.26e-08!21;UBERON:0002294!9.56e-08!7;UBERON:0001173!9.56e-08!7;UBERON:0004912!9.56e-08!7;UBERON:0003343!1.27e-07!4;UBERON:0004785!1.27e-07!4;UBERON:0004923!1.88e-07!57;UBERON:0000974!2.19e-07!10;UBERON:0005156!3.20e-07!59;UBERON:0000990!3.20e-07!59;UBERON:0002048!4.33e-07!22;UBERON:0000117!4.33e-07!22;UBERON:0000171!4.33e-07!22;UBERON:0000170!4.33e-07!22;UBERON:0005597!4.33e-07!22;UBERON:0000118!4.33e-07!22;UBERON:0004807!9.10e-07!28 | |ontology_enrichment_uberon=UBERON:0004119!1.52e-19!169;UBERON:0000925!1.52e-19!169;UBERON:0006595!1.52e-19!169;UBERON:0001007!3.33e-15!155;UBERON:0001555!3.33e-15!155;UBERON:0007026!3.33e-15!155;UBERON:0005631!1.10e-13!14;UBERON:0000158!1.10e-13!14;UBERON:0001004!4.87e-13!72;UBERON:0000077!1.30e-12!130;UBERON:0000344!4.93e-12!12;UBERON:0000161!1.04e-11!35;UBERON:0005911!3.97e-11!82;UBERON:0004921!1.02e-10!129;UBERON:0004185!1.02e-10!129;UBERON:0000464!1.40e-10!104;UBERON:0005153!2.05e-10!37;UBERON:0005178!2.58e-09!34;UBERON:0002224!2.58e-09!34;UBERON:0000466!5.03e-09!126;UBERON:0003729!5.80e-09!5;UBERON:0005181!6.51e-09!35;UBERON:0000915!7.26e-09!52;UBERON:0003124!1.03e-08!7;UBERON:0000065!1.94e-08!53;UBERON:0000478!3.82e-08!24;UBERON:0005157!5.86e-08!51;UBERON:0000166!9.26e-08!21;UBERON:0002294!9.56e-08!7;UBERON:0001173!9.56e-08!7;UBERON:0004912!9.56e-08!7;UBERON:0003343!1.27e-07!4;UBERON:0004785!1.27e-07!4;UBERON:0004923!1.88e-07!57;UBERON:0000974!2.19e-07!10;UBERON:0005156!3.20e-07!59;UBERON:0000990!3.20e-07!59;UBERON:0002048!4.33e-07!22;UBERON:0000117!4.33e-07!22;UBERON:0000171!4.33e-07!22;UBERON:0000170!4.33e-07!22;UBERON:0005597!4.33e-07!22;UBERON:0000118!4.33e-07!22;UBERON:0004807!9.10e-07!28 | ||
|ontology_enrichment_uberon_v019=UBERON:0000974;2.35e-18;6!UBERON:0005631;3.36e-16;10!UBERON:0000158;3.36e-16;10!UBERON:0000478;1.06e-14;24!UBERON:0003343;3.58e-13;4!UBERON:0004785;3.58e-13;4!UBERON:0000305;2.03e-12;7!UBERON:0000058;1.33e-10;10!UBERON:0000344;1.02e-08;20!UBERON:0001987;1.15e-07;4!UBERON:0002394;1.38e-07;4!UBERON:0003928;1.38e-07;4!UBERON:0006562;3.07e-07;2!UBERON:0002294;3.34e-07;7!UBERON:0001173;3.34e-07;7!UBERON:0000341;6.96e-07;2!UBERON:0004923;8.61e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.47e-22,14;UBERON:0000158,1.47e-22,14;UBERON:0000478,6.37e-15,24;UBERON:0003343,1.72e-13,4;UBERON:0004785,1.72e-13,4;UBERON:0000305,2.20e-12,7;UBERON:0003124,7.84e-12,7;UBERON:0004923,1.67e-11,66;UBERON:0004119,2.66e-11,160;UBERON:0000925,2.66e-11,160;UBERON:0006595,2.66e-11,160;UBERON:0000974,6.08e-11,10;UBERON:0004871,8.88e-11,8;UBERON:0000344,9.41e-09,20;UBERON:0004175,1.32e-08,25;UBERON:0001007,2.64e-08,145;UBERON:0001555,2.64e-08,145;UBERON:0007026,2.64e-08,145;UBERON:0001987,5.38e-08,4;UBERON:0004340,5.38e-08,4;UBERON:0000341,6.20e-07,2 | |||
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| ||
|short_description=p4@GRHL2 | |short_description=p4@GRHL2 | ||
}} | }} |
Latest revision as of 21:38, 24 September 2015
Short description: | p4@GRHL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GRHL2_5end |
Coexpression cluster: | C1541_amniotic_Amniotic_MCF7_Placental_chorionic_oral_acantholytic |
Association with transcript: | -33bp_to_ENST00000395927_5end |
EntrezGene: | GRHL2 |
HGNC: | 2799 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.93e-13 | 19 |
endo-epithelial cell | 7.25e-13 | 42 |
epithelial cell | 3.24e-12 | 253 |
epithelial cell of alimentary canal | 5.18e-11 | 20 |
endodermal cell | 1.14e-09 | 58 |
amniotic epithelial cell | 6.25e-08 | 2 |
squamous epithelial cell | 8.66e-08 | 63 |
amnion mesenchymal stem cell | 6.76e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.47e-22 | 14 |
membranous layer | 1.47e-22 | 14 |
extraembryonic structure | 6.37e-15 | 24 |
mucosa of oral region | 1.72e-13 | 4 |
respiratory system mucosa | 1.72e-13 | 4 |
amnion | 2.20e-12 | 7 |
chorion | 7.84e-12 | 7 |
organ component layer | 1.67e-11 | 66 |
endoderm-derived structure | 2.66e-11 | 160 |
endoderm | 2.66e-11 | 160 |
presumptive endoderm | 2.66e-11 | 160 |
neck | 6.08e-11 | 10 |
somatic layer of lateral plate mesoderm | 8.88e-11 | 8 |
mucosa | 9.41e-09 | 20 |
internal genitalia | 1.32e-08 | 25 |
digestive system | 2.64e-08 | 145 |
digestive tract | 2.64e-08 | 145 |
primitive gut | 2.64e-08 | 145 |
placenta | 5.38e-08 | 4 |
allantois | 5.38e-08 | 4 |
throat | 6.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.60e-26 | 14 |
carcinoma | 1.08e-18 | 106 |
cell type cancer | 6.83e-12 | 143 |
disease of anatomical entity | 4.09e-09 | 39 |
adenocarcinoma | 5.82e-08 | 25 |
thoracic cancer | 2.93e-07 | 4 |
breast cancer | 2.93e-07 | 4 |
cancer | 9.34e-07 | 235 |