FFCP PHASE1:Hg19::chr9:134497381..134497402,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2889 | |EntrezGene=2889 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4568 | |HGNC=4568 | ||
|TSSclassifier=strong | |||
|UniProt=A5XEI8,A5XEJ1,A5XEJ0,A5XEI6,A5XEI5,A5XEI9 | |UniProt=A5XEI8,A5XEJ1,A5XEJ0,A5XEI6,A5XEI5,A5XEI9 | ||
|association_with_transcript=0bp_to_uc010mzl.1,uc010mzo.1,uc010mzp.1,uc010mzq.1,uc010mzr.1,uc010mzs.1_5end | |association_with_transcript=0bp_to_uc010mzl.1,uc010mzo.1,uc010mzp.1,uc010mzq.1,uc010mzr.1,uc010mzs.1_5end | ||
|cluster_id=chr9:134497381..134497402,- | |||
|coexpression_cluster_id=C2859 | |||
|description=CAGE_peak_6_at_RAPGEF1_5end | |description=CAGE_peak_6_at_RAPGEF1_5end | ||
|id=chr9:134497381..134497402,- | |id=chr9:134497381..134497402,- | ||
|ontology_enrichment_celltype=CL:0000738!1.14e-20!140;CL:0000451!7.31e-17!10;CL:0000988!5.05e-16!182;CL:0000037!1.49e-14!172;CL:0000566!1.49e-14!172;CL:0000542!7.82e-14!53;CL:0000051!7.82e-14!53;CL:0000838!1.06e-12!52;CL:0000990!1.45e-12!8;CL:0002087!1.86e-12!119;CL:0002032!5.78e-12!165;CL:0000837!5.78e-12!165;CL:0002031!1.17e-11!124;CL:0000080!1.04e-09!6;CL:0000784!1.42e-08!3;CL:0000453!1.54e-08!5;CL:0000623!2.98e-08!3;CL:0000825!2.98e-08!3;CL:0000767!2.02e-07!3 | |ontology_enrichment_celltype=CL:0000738!1.14e-20!140;CL:0000451!7.31e-17!10;CL:0000988!5.05e-16!182;CL:0000037!1.49e-14!172;CL:0000566!1.49e-14!172;CL:0000542!7.82e-14!53;CL:0000051!7.82e-14!53;CL:0000838!1.06e-12!52;CL:0000990!1.45e-12!8;CL:0002087!1.86e-12!119;CL:0002032!5.78e-12!165;CL:0000837!5.78e-12!165;CL:0002031!1.17e-11!124;CL:0000080!1.04e-09!6;CL:0000784!1.42e-08!3;CL:0000453!1.54e-08!5;CL:0000623!2.98e-08!3;CL:0000825!2.98e-08!3;CL:0000767!2.02e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000451;1.66e-40;10!CL:0000453;1.15e-29;5!CL:0000784;9.34e-29;3!CL:0000623;1.42e-27;3!CL:0000990;1.34e-25;8!CL:0000542;4.65e-08;53!CL:0000840;5.18e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000451,1.44e-40,10;CL:0000453,9.20e-30,5;CL:0000784,9.79e-29,3;CL:0000623,1.71e-27,3;CL:0000825,1.71e-27,3;CL:0000990,1.15e-25,8;CL:0000988,1.89e-17,177;CL:0000738,1.97e-16,136;CL:0000037,8.62e-13,168;CL:0000838,9.24e-13,52;CL:0000542,1.70e-12,53;CL:0000051,1.70e-12,53;CL:0002032,4.26e-10,161;CL:0000837,4.26e-10,161;CL:0002031,9.01e-09,120;CL:0002087,1.12e-07,115;CL:0000840,4.80e-07,5;CL:0001029,4.80e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000051;4.65e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;1.98e-10;1!DOID:0050177;1.98e-10;1!DOID:0050427;1.98e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.89e-10,1;DOID:0050177,1.89e-10,1;DOID:0050427,1.89e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002193!4.05e-07!112 | |ontology_enrichment_uberon=UBERON:0002193!4.05e-07!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;8.27e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,8.27e-09,10;UBERON:0000358,8.27e-09,10;UBERON:0000307,8.27e-09,10;UBERON:0000091,8.27e-09,10;UBERON:0000087,8.27e-09,10;UBERON:0007010,8.27e-09,10;UBERON:0007806,8.27e-09,10;UBERON:0008780,8.27e-09,10;UBERON:0005728,8.27e-09,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764134057479513,0.821005894499457,0.787107813136792,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0,1.60435557976113,0.217010870715852,0,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,9.39579502993502,4.96955196562797,0,1.68152568894461,0,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.201606743224732,3.20928234940209,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0.324547393654683,0,0.132957960518865,12.4015124638778,11.4398982156026,5.20040501861391,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0.760272105718513,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18218456121156,5.82194452120697,2.05348858047597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371606350251437,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0.552567831062295,0,0,1.10776324914963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.22694370229306,4.07760998523459,2.71497068714184,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.799791132412,0,0,0,0,0.0524545881349981,0.105600336519406,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,15.5888247071511,4.78313425128107,9.81392365535065,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0.576169937778896,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,2.59847005404815,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372448285775147,0,0,0,0,0,0.26940821205835,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,3.52625341533556 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764134057479513,0.821005894499457,0.787107813136792,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0,0,0,0,1.60435557976113,0.217010870715852,0,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,9.39579502993502,4.96955196562797,0,1.68152568894461,0,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.201606743224732,3.20928234940209,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0.324547393654683,0,0.132957960518865,12.4015124638778,11.4398982156026,5.20040501861391,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0.760272105718513,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18218456121156,5.82194452120697,2.05348858047597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371606350251437,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0.552567831062295,0,0,1.10776324914963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.22694370229306,4.07760998523459,2.71497068714184,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.799791132412,0,0,0,0,0.0524545881349981,0.105600336519406,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,15.5888247071511,4.78313425128107,9.81392365535065,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0.576169937778896,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,2.59847005404815,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372448285775147,0,0,0,0,0,0.26940821205835,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,3.52625341533556 | ||
|short_description=p6@RAPGEF1 | |short_description=p6@RAPGEF1 | ||
}} | }} |
Latest revision as of 02:58, 16 September 2015
Short description: | p6@RAPGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RAPGEF1_5end |
Coexpression cluster: | C2859_Dendritic_migratory_myeloma_adult_lymphangiectasia_xeroderma_cord |
Association with transcript: | 0bp_to_uc010mzl.1, uc010mzo.1, uc010mzp.1, uc010mzq.1, uc010mzr.1, uc010mzs.1_5end |
EntrezGene: | RAPGEF1 |
HGNC: | 4568 |
UniProt: | A5XEI8A5XEJ1A5XEJ0A5XEI6A5XEI5A5XEI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
dendritic cell | 1.44e-40 | 10 |
Langerhans cell | 9.20e-30 | 5 |
plasmacytoid dendritic cell | 9.79e-29 | 3 |
natural killer cell | 1.71e-27 | 3 |
pro-NK cell | 1.71e-27 | 3 |
conventional dendritic cell | 1.15e-25 | 8 |
hematopoietic cell | 1.89e-17 | 177 |
leukocyte | 1.97e-16 | 136 |
hematopoietic stem cell | 8.62e-13 | 168 |
lymphoid lineage restricted progenitor cell | 9.24e-13 | 52 |
lymphocyte | 1.70e-12 | 53 |
common lymphoid progenitor | 1.70e-12 | 53 |
hematopoietic oligopotent progenitor cell | 4.26e-10 | 161 |
hematopoietic multipotent progenitor cell | 4.26e-10 | 161 |
hematopoietic lineage restricted progenitor cell | 9.01e-09 | 120 |
nongranular leukocyte | 1.12e-07 | 115 |
immature conventional dendritic cell | 4.80e-07 | 5 |
common dendritic progenitor | 4.80e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 8.27e-09 | 10 |
blastocyst | 8.27e-09 | 10 |
blastula | 8.27e-09 | 10 |
bilaminar disc | 8.27e-09 | 10 |
inner cell mass | 8.27e-09 | 10 |
cleaving embryo | 8.27e-09 | 10 |
connecting stalk | 8.27e-09 | 10 |
inner cell mass derived epiblast | 8.27e-09 | 10 |
extraembryonic mesoderm | 8.27e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.89e-10 | 1 |
monogenic disease | 1.89e-10 | 1 |
xeroderma pigmentosum | 1.89e-10 | 1 |