FFCP PHASE1:Hg19::chr4:57898615..57898634,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:57898615..57898634,- | |||
|coexpression_cluster_id=C772 | |||
|description=CAGE_peak_at_chr4:57898615..57898634,- | |description=CAGE_peak_at_chr4:57898615..57898634,- | ||
|id=chr4:57898615..57898634,- | |id=chr4:57898615..57898634,- | ||
|ontology_enrichment_celltype=CL:0000055!5.59e-15!180;CL:0000222!8.03e-13!119;CL:0000192!4.12e-12!42;CL:0000514!4.12e-12!42;CL:0000359!6.69e-12!32;CL:0000183!6.51e-11!59;CL:0000680!4.03e-10!57;CL:0000056!4.03e-10!57;CL:0000355!4.03e-10!57;CL:0000187!1.93e-09!54;CL:0000057!3.05e-09!75;CL:0000393!2.17e-07!60;CL:0000211!2.17e-07!60 | |ontology_enrichment_celltype=CL:0000055!5.59e-15!180;CL:0000222!8.03e-13!119;CL:0000192!4.12e-12!42;CL:0000514!4.12e-12!42;CL:0000359!6.69e-12!32;CL:0000183!6.51e-11!59;CL:0000680!4.03e-10!57;CL:0000056!4.03e-10!57;CL:0000355!4.03e-10!57;CL:0000187!1.93e-09!54;CL:0000057!3.05e-09!75;CL:0000393!2.17e-07!60;CL:0000211!2.17e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.09e-12;32!CL:0000192;1.35e-08;43!CL:0002334;7.23e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.09e-13,32;CL:0000192,5.72e-13,43;CL:0000514,5.72e-13,43;CL:0000222,9.83e-11,121;CL:0000187,3.05e-08,55;CL:0000680,3.81e-08,58;CL:0000056,3.81e-08,58;CL:0000355,3.81e-08,58;CL:0000057,5.66e-08,76 | |||
|ontology_enrichment_development_v019=CL:0000514;1.35e-08;43 | |||
|ontology_enrichment_disease=DOID:2394!3.42e-07!14 | |ontology_enrichment_disease=DOID:2394!3.42e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;2.60e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.65e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.11e-14!79;UBERON:0007798!1.11e-14!79;UBERON:0000055!6.38e-13!69;UBERON:0000477!7.12e-13!286;UBERON:0004872!2.08e-12!84;UBERON:0001009!4.42e-12!113;UBERON:0003914!6.10e-12!118;UBERON:0004535!1.28e-11!110;UBERON:0001637!2.43e-11!42;UBERON:0003509!2.43e-11!42;UBERON:0004572!2.43e-11!42;UBERON:0001981!2.91e-11!60;UBERON:0007500!2.91e-11!60;UBERON:0004537!2.91e-11!60;UBERON:0006965!2.91e-11!60;UBERON:0004111!3.24e-10!241;UBERON:0005256!1.05e-09!143;UBERON:0002385!1.39e-09!63;UBERON:0001015!1.39e-09!63;UBERON:0000383!1.39e-09!63;UBERON:0001134!1.77e-09!61;UBERON:0002036!1.77e-09!61;UBERON:0003082!1.77e-09!61;UBERON:0004573!4.02e-09!33;UBERON:0004571!4.02e-09!33;UBERON:0000914!2.53e-08!83;UBERON:0002329!2.53e-08!83;UBERON:0003077!2.53e-08!83;UBERON:0003059!2.53e-08!83;UBERON:0007282!2.53e-08!83;UBERON:0009618!2.53e-08!83;UBERON:0007285!2.53e-08!83;UBERON:0000468!2.62e-08!659;UBERON:0000119!5.52e-08!312;UBERON:0000486!7.31e-08!82;UBERON:0003103!8.22e-08!69;UBERON:0000475!9.30e-08!365;UBERON:0000483!1.03e-07!309;UBERON:0000025!1.38e-07!194;UBERON:0000481!1.67e-07!347;UBERON:0000467!2.57e-07!625;UBERON:0004290!2.57e-07!70;UBERON:0000480!3.64e-07!626;UBERON:0007100!5.82e-07!27 | |ontology_enrichment_uberon=UBERON:0002049!1.11e-14!79;UBERON:0007798!1.11e-14!79;UBERON:0000055!6.38e-13!69;UBERON:0000477!7.12e-13!286;UBERON:0004872!2.08e-12!84;UBERON:0001009!4.42e-12!113;UBERON:0003914!6.10e-12!118;UBERON:0004535!1.28e-11!110;UBERON:0001637!2.43e-11!42;UBERON:0003509!2.43e-11!42;UBERON:0004572!2.43e-11!42;UBERON:0001981!2.91e-11!60;UBERON:0007500!2.91e-11!60;UBERON:0004537!2.91e-11!60;UBERON:0006965!2.91e-11!60;UBERON:0004111!3.24e-10!241;UBERON:0005256!1.05e-09!143;UBERON:0002385!1.39e-09!63;UBERON:0001015!1.39e-09!63;UBERON:0000383!1.39e-09!63;UBERON:0001134!1.77e-09!61;UBERON:0002036!1.77e-09!61;UBERON:0003082!1.77e-09!61;UBERON:0004573!4.02e-09!33;UBERON:0004571!4.02e-09!33;UBERON:0000914!2.53e-08!83;UBERON:0002329!2.53e-08!83;UBERON:0003077!2.53e-08!83;UBERON:0003059!2.53e-08!83;UBERON:0007282!2.53e-08!83;UBERON:0009618!2.53e-08!83;UBERON:0007285!2.53e-08!83;UBERON:0000468!2.62e-08!659;UBERON:0000119!5.52e-08!312;UBERON:0000486!7.31e-08!82;UBERON:0003103!8.22e-08!69;UBERON:0000475!9.30e-08!365;UBERON:0000483!1.03e-07!309;UBERON:0000025!1.38e-07!194;UBERON:0000481!1.67e-07!347;UBERON:0000467!2.57e-07!625;UBERON:0004290!2.57e-07!70;UBERON:0000480!3.64e-07!626;UBERON:0007100!5.82e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.20e-08;33!UBERON:0004571;1.20e-08;33!UBERON:0001637;1.47e-08;42!UBERON:0003509;1.47e-08;42!UBERON:0004572;1.47e-08;42!UBERON:0004457;1.90e-08;9!UBERON:0000042;1.90e-08;9!UBERON:0003688;2.38e-08;6!UBERON:0002358;2.38e-08;6!UBERON:0003684;2.38e-08;6!UBERON:0001178;2.38e-08;6 | |||
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| ||
|short_description=p@chr4:57898615..57898634,- | |short_description=p@chr4:57898615..57898634,- | ||
}} | }} |
Latest revision as of 05:52, 30 July 2015
Short description: | p@chr4:57898615..57898634, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:57898615..57898634, - |
Coexpression cluster: | C772_Smooth_Fibroblast_Adipocyte_Preadipocyte_hepatic_Renal_Osteoblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.09e-13 | 32 |
smooth muscle cell | 5.72e-13 | 43 |
smooth muscle myoblast | 5.72e-13 | 43 |
mesodermal cell | 9.83e-11 | 121 |
muscle cell | 3.05e-08 | 55 |
muscle precursor cell | 3.81e-08 | 58 |
myoblast | 3.81e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.81e-08 | 58 |
fibroblast | 5.66e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.96e-14 | 78 |
vascular system | 1.96e-14 | 78 |
epithelial tube | 1.49e-13 | 117 |
vessel | 1.15e-12 | 68 |
cardiovascular system | 4.05e-12 | 109 |
circulatory system | 5.51e-12 | 112 |
splanchnic layer of lateral plate mesoderm | 1.57e-11 | 83 |
artery | 2.61e-11 | 42 |
arterial blood vessel | 2.61e-11 | 42 |
arterial system | 2.61e-11 | 42 |
epithelial tube open at both ends | 5.58e-11 | 59 |
blood vessel | 5.58e-11 | 59 |
blood vasculature | 5.58e-11 | 59 |
vascular cord | 5.58e-11 | 59 |
systemic artery | 3.04e-10 | 33 |
systemic arterial system | 3.04e-10 | 33 |
omentum | 2.68e-08 | 6 |
peritoneum | 2.68e-08 | 6 |
abdominal cavity | 2.68e-08 | 6 |
visceral peritoneum | 2.68e-08 | 6 |
mesenchyme | 4.01e-08 | 160 |
entire embryonic mesenchyme | 4.01e-08 | 160 |
anatomical conduit | 7.10e-08 | 240 |
skeletal muscle tissue | 8.04e-08 | 62 |
striated muscle tissue | 8.04e-08 | 62 |
myotome | 8.04e-08 | 62 |
epithelial vesicle | 2.46e-07 | 78 |
muscle tissue | 2.57e-07 | 64 |
musculature | 2.57e-07 | 64 |
musculature of body | 2.57e-07 | 64 |
trunk mesenchyme | 3.68e-07 | 122 |
trunk | 5.22e-07 | 199 |
dense mesenchyme tissue | 7.83e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.65e-07 | 14 |