FFCP PHASE1:Hg19::chr12:57624059..57624066,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt=G3V4X0 | |UniProt=G3V4X0 | ||
|association_with_transcript=0bp_to_ENST00000557427_5end | |association_with_transcript=0bp_to_ENST00000557427_5end | ||
|cluster_id=chr12:57624059..57624066,+ | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_34_at_SHMT2_5end | |description=CAGE_peak_34_at_SHMT2_5end | ||
|id=chr12:57624059..57624066,+ | |id=chr12:57624059..57624066,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002550;5.05e-34;1!CL:0002363;9.07e-18;2!CL:0000312;6.55e-08;5!CL:0000240;8.48e-07;6!CL:0000311;8.48e-07;6!CL:0000079;8.48e-07;6!CL:0000237;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002550,3.61e-34,1;CL:0002363,6.48e-18,2;CL:0000008,6.48e-18,2;CL:0000312,7.01e-08,5;CL:0000240,8.97e-07,6;CL:0000311,8.97e-07,6;CL:0000079,8.97e-07,6;CL:0000237,8.97e-07,6;CL:0000036,8.97e-07,6;CL:0000357,8.97e-07,6;CL:0000114,8.97e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000008;9.07e-18;2!CL:0000357;8.48e-07;6!CL:0000114;8.48e-07;6 | |||
|ontology_enrichment_disease=DOID:4556!2.86e-08!3;DOID:14566!3.16e-07!239;DOID:154!8.60e-07!2;DOID:4236!8.60e-07!2 | |ontology_enrichment_disease=DOID:4556!2.86e-08!3;DOID:14566!3.16e-07!239;DOID:154!8.60e-07!2;DOID:4236!8.60e-07!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0003566;9.07e-18;2!UBERON:0001777;9.07e-18;2!UBERON:0003891;1.44e-09;4!UBERON:0000964;1.44e-09;4!UBERON:0010409;1.44e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003566,6.48e-18,2;UBERON:0001777,6.48e-18,2;UBERON:0003891,1.22e-09,4;UBERON:0000964,1.22e-09,4;UBERON:0010409,1.22e-09,4;UBERON:0004348,1.22e-09,4;UBERON:0005427,1.22e-09,4 | |||
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| ||
|short_description=p34@SHMT2 | |short_description=p34@SHMT2 | ||
}} | }} |
Latest revision as of 13:38, 19 September 2015
Short description: | p34@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_34_at_SHMT2_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | 0bp_to_ENST00000557427_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | G3V4X0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of the conjuctiva | 3.61e-34 | 1 |
keratocyte | 6.48e-18 | 2 |
migratory cranial neural crest cell | 6.48e-18 | 2 |
keratinocyte | 7.01e-08 | 5 |
stratified squamous epithelial cell | 8.97e-07 | 6 |
keratin accumulating cell | 8.97e-07 | 6 |
stratified epithelial cell | 8.97e-07 | 6 |
keratinizing barrier epithelial cell | 8.97e-07 | 6 |
epithelial fate stem cell | 8.97e-07 | 6 |
stratified epithelial stem cell | 8.97e-07 | 6 |
surface ectodermal cell | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
head connective tissue | 6.48e-18 | 2 |
substantia propria of cornea | 6.48e-18 | 2 |
stroma | 1.22e-09 | 4 |
cornea | 1.22e-09 | 4 |
eye surface | 1.22e-09 | 4 |
optic eminence | 1.22e-09 | 4 |
corneal primordium | 1.22e-09 | 4 |