FFCP PHASE1:Hg19::chr9:118687405..118687409,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58483 | |EntrezGene=58483 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=23367 | |HGNC=23367 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-28bp_to_NR_024032,uc004bjm.2_5end | |association_with_transcript=-28bp_to_NR_024032,uc004bjm.2_5end | ||
|cluster_id=chr9:118687405..118687409,- | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_3_at_LINC00474_5end | |description=CAGE_peak_3_at_LINC00474_5end | ||
|id=chr9:118687405..118687409,- | |id=chr9:118687405..118687409,- | ||
|ontology_enrichment_celltype=CL:0002150!3.60e-18!3;CL:0000861!3.60e-18!3;CL:0002557!1.41e-14!1;CL:0000192!7.43e-08!42;CL:0000514!7.43e-08!42;CL:0000359!6.64e-07!32 | |ontology_enrichment_celltype=CL:0002150!3.60e-18!3;CL:0000861!3.60e-18!3;CL:0002557!1.41e-14!1;CL:0000192!7.43e-08!42;CL:0000514!7.43e-08!42;CL:0000359!6.64e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000138;6.34e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,6.34e-08,6;CL:0000138,6.34e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0003124;6.62e-41;1!UBERON:0004872;5.08e-07;7 | |||
|ontology_enrichment_disease=DOID:3371!6.22e-15!1;DOID:4549!6.22e-15!1;DOID:5861!6.22e-15!1;DOID:6496!6.22e-15!1 | |ontology_enrichment_disease=DOID:3371!6.22e-15!1;DOID:4549!6.22e-15!1;DOID:5861!6.22e-15!1;DOID:6496!6.22e-15!1 | ||
|ontology_enrichment_disease_v019=DOID:3371;1.48e-40;1!DOID:4549;1.48e-40;1!DOID:5861;1.48e-40;1!DOID:6496;1.48e-40;1!DOID:201;6.34e-08;6!DOID:0060100;6.34e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.48e-40,1;DOID:4549,1.48e-40,1;DOID:5861,1.48e-40,1;DOID:6496,1.48e-40,1;DOID:201,6.34e-08,6;DOID:0060100,6.34e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0003498!1.42e-11!5;UBERON:0005985!1.42e-11!5;UBERON:0007497!6.15e-08!2;UBERON:0003643!6.15e-08!2;UBERON:0003504!6.15e-08!2;UBERON:0003469!6.15e-08!2;UBERON:0003496!6.15e-08!2;UBERON:0004797!6.15e-08!2;UBERON:0002012!6.15e-08!2;UBERON:0008886!6.15e-08!2;UBERON:0007303!6.15e-08!2;UBERON:0002061!6.15e-08!2;UBERON:0005432!6.15e-08!2;UBERON:0004363!6.15e-08!2;UBERON:0001637!7.10e-08!42;UBERON:0003509!7.10e-08!42;UBERON:0004572!7.10e-08!42 | |ontology_enrichment_uberon=UBERON:0003498!1.42e-11!5;UBERON:0005985!1.42e-11!5;UBERON:0007497!6.15e-08!2;UBERON:0003643!6.15e-08!2;UBERON:0003504!6.15e-08!2;UBERON:0003469!6.15e-08!2;UBERON:0003496!6.15e-08!2;UBERON:0004797!6.15e-08!2;UBERON:0002012!6.15e-08!2;UBERON:0008886!6.15e-08!2;UBERON:0007303!6.15e-08!2;UBERON:0002061!6.15e-08!2;UBERON:0005432!6.15e-08!2;UBERON:0004363!6.15e-08!2;UBERON:0001637!7.10e-08!42;UBERON:0003509!7.10e-08!42;UBERON:0004572!7.10e-08!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0002418;1.60e-14;3!UBERON:0004755;1.60e-14;3!UBERON:0001987;2.53e-11;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,1.60e-14,3;UBERON:0004755,1.60e-14,3;UBERON:0001987,2.53e-11,4;UBERON:0004340,2.53e-11,4;UBERON:0003124,5.08e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01859945426117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,3.85989583184795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0.0821154570532092,0,4.32455020788351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5768336777855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0233678283782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01859945426117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,3.85989583184795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0.0821154570532092,0,4.32455020788351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5768336777855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0233678283782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@LINC00474 | |short_description=p3@LINC00474 | ||
}} | }} |
Latest revision as of 17:32, 24 September 2015
Short description: | p3@LINC00474 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LINC00474_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | -28bp_to_NR_024032, uc004bjm.2_5end |
EntrezGene: | LINC00474 |
HGNC: | 23367 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 6.34e-08 | 6 |
chondrocyte | 6.34e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 1.60e-14 | 3 |
skeletal tissue | 1.60e-14 | 3 |
placenta | 2.53e-11 | 4 |
allantois | 2.53e-11 | 4 |
chorion | 5.08e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.48e-40 | 1 |
extraosseous chondrosarcoma | 1.48e-40 | 1 |
myxoid chondrosarcoma | 1.48e-40 | 1 |
extraskeletal myxoid chondrosarcoma | 1.48e-40 | 1 |
connective tissue cancer | 6.34e-08 | 6 |
musculoskeletal system cancer | 6.34e-08 | 6 |