FFCP PHASE1:Hg19::chr14:74815204..74815217,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55237 | |EntrezGene=55237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20223 | |HGNC=20223 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H8Y1 | |UniProt=Q9H8Y1 | ||
|association_with_transcript=38bp_to_NM_018228,uc001xpw.3_5end | |association_with_transcript=38bp_to_NM_018228,uc001xpw.3_5end | ||
|cluster_id=chr14:74815204..74815217,+ | |||
|coexpression_cluster_id=C3450 | |||
|description=CAGE_peak_2_at_VRTN_5end | |description=CAGE_peak_2_at_VRTN_5end | ||
|id=chr14:74815204..74815217,+ | |id=chr14:74815204..74815217,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.21e-50!5;CL:0000540!5.00e-16!6;CL:0000031!5.00e-16!6;CL:0000404!5.00e-16!6;CL:0000039!2.77e-13!7;CL:0000586!2.77e-13!7;CL:0000047!3.65e-12!8;CL:0000148!9.85e-10!10;CL:0000541!9.85e-10!10;CL:0000147!4.34e-07!14 | |ontology_enrichment_celltype=CL:0002322!2.21e-50!5;CL:0000540!5.00e-16!6;CL:0000031!5.00e-16!6;CL:0000404!5.00e-16!6;CL:0000039!2.77e-13!7;CL:0000586!2.77e-13!7;CL:0000047!3.65e-12!8;CL:0000148!9.85e-10!10;CL:0000541!9.85e-10!10;CL:0000147!4.34e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.16e-66;5!CL:0002321;3.71e-22;15!CL:0000540;7.28e-21;6!CL:0000404;7.28e-21;6!CL:0000039;2.89e-17;7!CL:0000586;2.89e-17;7!CL:0000148;1.18e-12;10!CL:0000147;3.35e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.16e-66,5;CL:0000540,7.28e-21,6;CL:0000031,7.28e-21,6;CL:0000404,7.28e-21,6;CL:0000039,2.89e-17,7;CL:0000586,2.89e-17,7;CL:0000047,8.14e-16,8;CL:0000148,1.22e-12,10;CL:0000541,1.22e-12,10;CL:0000147,3.44e-09,14;CL:0000133,1.28e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.32e-21;10!UBERON:0005564;5.32e-21;10!CL:0000031;7.28e-21;6 | |||
|ontology_enrichment_disease=DOID:3095!7.24e-16!22;DOID:2994!7.24e-16!22;DOID:3371!1.97e-11!1;DOID:4549!1.97e-11!1;DOID:5861!1.97e-11!1;DOID:6496!1.97e-11!1 | |ontology_enrichment_disease=DOID:3095!7.24e-16!22;DOID:2994!7.24e-16!22;DOID:3371!1.97e-11!1;DOID:4549!1.97e-11!1;DOID:5861!1.97e-11!1;DOID:6496!1.97e-11!1 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.03e-15;22!DOID:2994;7.03e-15;22!DOID:3371;1.31e-14;1!DOID:4549;1.31e-14;1!DOID:5861;1.31e-14;1!DOID:6496;1.31e-14;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.04e-15,22;DOID:2994,7.04e-15,22;DOID:3371,1.41e-14,1;DOID:4549,1.41e-14,1;DOID:5861,1.41e-14,1;DOID:6496,1.41e-14,1 | |||
|ontology_enrichment_uberon=UBERON:0000473!7.24e-20!8;UBERON:0003135!1.58e-14!11;UBERON:0000991!1.27e-11!21;UBERON:0009196!1.27e-11!21;UBERON:0009117!1.27e-11!21;UBERON:0005564!1.27e-11!21;UBERON:0004176!4.33e-11!22;UBERON:0003101!4.72e-11!22;UBERON:0000079!4.72e-11!22;UBERON:0002372!5.43e-11!1;UBERON:0001961!5.43e-11!1;UBERON:0001744!5.43e-11!1;UBERON:0001735!5.43e-11!1;UBERON:0002323!2.89e-07!46;UBERON:0004458!8.56e-07!49 | |ontology_enrichment_uberon=UBERON:0000473!7.24e-20!8;UBERON:0003135!1.58e-14!11;UBERON:0000991!1.27e-11!21;UBERON:0009196!1.27e-11!21;UBERON:0009117!1.27e-11!21;UBERON:0005564!1.27e-11!21;UBERON:0004176!4.33e-11!22;UBERON:0003101!4.72e-11!22;UBERON:0000079!4.72e-11!22;UBERON:0002372!5.43e-11!1;UBERON:0001961!5.43e-11!1;UBERON:0001744!5.43e-11!1;UBERON:0001735!5.43e-11!1;UBERON:0002323!2.89e-07!46;UBERON:0004458!8.56e-07!49 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.43e-15;8!UBERON:0003135;3.22e-11;11!UBERON:0000922;1.83e-10;49!UBERON:0000991;3.62e-10;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.43e-15,8;UBERON:0003135,3.22e-11,11;UBERON:0000991,3.62e-10,21;UBERON:0009196,3.62e-10,21;UBERON:0009117,3.62e-10,21;UBERON:0005564,3.62e-10,21;UBERON:0004176,1.02e-09,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51302712679503,8.87949447753951,8.48215782947484,4.35376431064556,14.1299676490352,6.56959246336494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00141661502202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.0564861348764,13.7539436597234,10.3860084507296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27099564703142,0.327796715891087,24.7062076972302,3.16165372200143,1.06886962106224,1.37842349302267,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51302712679503,8.87949447753951,8.48215782947484,4.35376431064556,14.1299676490352,6.56959246336494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00141661502202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.0564861348764,13.7539436597234,10.3860084507296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27099564703142,0.327796715891087,24.7062076972302,3.16165372200143,1.06886962106224,1.37842349302267,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@VRTN | |short_description=p2@VRTN | ||
}} | }} |
Latest revision as of 00:29, 16 September 2015
Short description: | p2@VRTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VRTN_5end |
Coexpression cluster: | C3450_teratocarcinoma_iPS_H9_HES3GFP_extraskeletal_testicular_testis |
Association with transcript: | 38bp_to_NM_018228, uc001xpw.3_5end |
EntrezGene: | VRTN |
HGNC: | 20223 |
UniProt: | Q9H8Y1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.16e-66 | 5 |
neuron | 7.28e-21 | 6 |
neuroblast | 7.28e-21 | 6 |
electrically signaling cell | 7.28e-21 | 6 |
germ line cell | 2.89e-17 | 7 |
germ cell | 2.89e-17 | 7 |
neuronal stem cell | 8.14e-16 | 8 |
melanocyte | 1.22e-12 | 10 |
melanoblast | 1.22e-12 | 10 |
pigment cell | 3.44e-09 | 14 |
neurectodermal cell | 1.28e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 3.43e-15 | 8 |
male reproductive organ | 3.22e-11 | 11 |
gonad | 3.62e-10 | 21 |
indifferent external genitalia | 3.62e-10 | 21 |
indifferent gonad | 3.62e-10 | 21 |
gonad primordium | 3.62e-10 | 21 |
external genitalia | 1.02e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.04e-15 | 22 |
germ cell cancer | 7.04e-15 | 22 |
chondrosarcoma | 1.41e-14 | 1 |
extraosseous chondrosarcoma | 1.41e-14 | 1 |
myxoid chondrosarcoma | 1.41e-14 | 1 |
extraskeletal myxoid chondrosarcoma | 1.41e-14 | 1 |