FFCP PHASE1:Hg19::chr17:26696346..26696357,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:26696346..26696357,-
|short_description=p7@VTN
|description=CAGE_peak_7_at_VTN_5end
|association_with_transcript=-388bp_to_ENST00000539746_5end
|EntrezGe...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7448 | |EntrezGene=7448 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12724 | |HGNC=12724 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-388bp_to_ENST00000539746_5end | |||
|cluster_id=chr17:26696346..26696357,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_7_at_VTN_5end | |||
|id=chr17:26696346..26696357,- | |||
|ontology_enrichment_celltype=CL:0000181!6.38e-22!12;CL:0000417!6.38e-22!12;CL:0000668!6.38e-22!12;CL:0000414!6.38e-22!12;CL:0000412!6.38e-22!12;CL:0000182!6.38e-22!12;CL:0002598!7.76e-12!1;CL:0000223!4.33e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.32e-22;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.79e-22,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.83e-11;11!UBERON:0009497;1.08e-09;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.08e-26!19;UBERON:0006925!1.08e-26!19;UBERON:0008836!1.08e-26!19;UBERON:0008835!5.63e-23!22;UBERON:0003894!5.63e-23!22;UBERON:0009854!5.95e-22!23;UBERON:0007499!3.78e-20!25;UBERON:0009497!3.78e-20!25;UBERON:0000015!3.78e-20!25;UBERON:0002423!3.78e-20!25;UBERON:0006235!3.78e-20!25;UBERON:0004161!3.78e-20!25;UBERON:0005057!2.37e-19!26;UBERON:0009856!2.37e-19!26;UBERON:0002365!3.94e-16!31;UBERON:0002330!3.94e-16!31;UBERON:0003929!1.01e-14!54;UBERON:0002368!3.25e-14!35;UBERON:0000949!6.58e-11!45;UBERON:0002530!1.37e-10!59;UBERON:0005911!2.70e-09!82;UBERON:0005172!8.45e-09!55;UBERON:0005173!8.45e-09!55;UBERON:0004921!3.32e-08!129;UBERON:0004185!3.32e-08!129;UBERON:0002417!7.27e-08!61;UBERON:0000916!7.27e-08!61;UBERON:0004119!3.97e-07!169;UBERON:0000925!3.97e-07!169;UBERON:0006595!3.97e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.40e-37;19!UBERON:0006925;2.40e-37;19!UBERON:0002423;1.60e-28;25!UBERON:0002365;4.94e-23;31!UBERON:0002330;4.94e-23;31!UBERON:0002368;6.56e-20;33!UBERON:0000949;1.96e-14;43!UBERON:0005172;2.09e-10;52!UBERON:0005173;2.09e-10;52!UBERON:0002417;4.84e-08;58!UBERON:0000916;4.84e-08;58!UBERON:0002530;1.33e-07;57!UBERON:0001007;1.78e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.40e-37,19;UBERON:0006925,2.40e-37,19;UBERON:0008836,2.40e-37,19;UBERON:0008835,2.47e-32,22;UBERON:0003894,2.47e-32,22;UBERON:0009854,5.93e-31,23;UBERON:0007499,1.60e-28,25;UBERON:0009497,1.60e-28,25;UBERON:0000015,1.60e-28,25;UBERON:0002423,1.60e-28,25;UBERON:0006235,1.60e-28,25;UBERON:0004161,1.60e-28,25;UBERON:0009856,1.91e-27,26;UBERON:0002365,4.21e-23,31;UBERON:0002330,4.21e-23,31;UBERON:0002368,1.62e-20,35;UBERON:0000949,4.68e-16,45;UBERON:0003929,1.91e-13,54;UBERON:0005172,1.91e-13,54;UBERON:0005173,1.91e-13,54;UBERON:0002530,2.45e-12,59;UBERON:0002417,3.89e-12,60;UBERON:0000916,3.89e-12,60;UBERON:0005911,5.80e-09,82;UBERON:0001041,1.84e-08,87;UBERON:0005177,2.54e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,5.07020139287323,6.87979051674338,2.95394953340702,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22468147755661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.36619664427641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42243264608905,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438568099157414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,5.07020139287323,6.87979051674338,2.95394953340702,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22468147755661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.36619664427641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42243264608905,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438568099157414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p7@VTN | |||
}} | }} |
Latest revision as of 05:35, 19 September 2015
Short description: | p7@VTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_VTN_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -388bp_to_ENST00000539746_5end |
EntrezGene: | VTN |
HGNC: | 12724 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.79e-22 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 2.40e-37 | 19 |
digestive gland | 2.40e-37 | 19 |
liver bud | 2.40e-37 | 19 |
hepatic diverticulum | 2.47e-32 | 22 |
liver primordium | 2.47e-32 | 22 |
digestive tract diverticulum | 5.93e-31 | 23 |
epithelial sac | 1.60e-28 | 25 |
epithelium of foregut-midgut junction | 1.60e-28 | 25 |
anatomical boundary | 1.60e-28 | 25 |
hepatobiliary system | 1.60e-28 | 25 |
foregut-midgut junction | 1.60e-28 | 25 |
septum transversum | 1.60e-28 | 25 |
sac | 1.91e-27 | 26 |
exocrine gland | 4.21e-23 | 31 |
exocrine system | 4.21e-23 | 31 |
endocrine gland | 1.62e-20 | 35 |
endocrine system | 4.68e-16 | 45 |
gut epithelium | 1.91e-13 | 54 |
abdomen element | 1.91e-13 | 54 |
abdominal segment element | 1.91e-13 | 54 |
gland | 2.45e-12 | 59 |
abdominal segment of trunk | 3.89e-12 | 60 |
abdomen | 3.89e-12 | 60 |
endo-epithelium | 5.80e-09 | 82 |
foregut | 1.84e-08 | 87 |
trunk region element | 2.54e-07 | 101 |