FFCP PHASE1:Hg19::chr17:47286729..47286764,-: Difference between revisions
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|id=chr17:47286729..47286764,-
|short_description=p6@GNGT2
|description=CAGE_peak_6_at_GNGT2_5end
|association_with_transcript=0bp_to_ENST00000300406,ENST0000051127...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2793 | |EntrezGene=2793 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4412 | |HGNC=4412 | ||
|TSSclassifier=strong | |||
|UniProt=O14610 | |UniProt=O14610 | ||
|association_with_transcript=0bp_to_ENST00000300406,ENST00000511277,ENST00000511673,NM_001198755,NM_001198756,NM_031498,uc002ioo.1_5end | |||
|cluster_id=chr17:47286729..47286764,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_6_at_GNGT2_5end | |||
|id=chr17:47286729..47286764,- | |||
|ontology_enrichment_celltype=CL:0000084!9.67e-10!25;CL:0000827!9.67e-10!25;CL:0000625!6.21e-08!11 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.50e-33;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.98e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.92e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!5.67e-09!2;UBERON:0002757!5.67e-09!2;UBERON:0010134!5.67e-09!2;UBERON:0002784!5.67e-09!2;UBERON:0005408!5.67e-09!2;UBERON:0001899!5.67e-09!2;UBERON:0002046!4.94e-07!5;UBERON:0004117!4.94e-07!5;UBERON:0007689!4.94e-07!5;UBERON:0007123!4.94e-07!5;UBERON:0003091!4.94e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;8.82e-51;2!UBERON:0002757;8.82e-51;2!UBERON:0010134;8.82e-51;2!UBERON:0005408;8.82e-51;2!UBERON:0001899;8.82e-51;2!UBERON:0003296;5.23e-26;4!UBERON:0010133;5.23e-26;4!UBERON:0002784;5.23e-26;4!UBERON:0000966;1.34e-20;5!UBERON:0005388;1.34e-20;5!UBERON:0001802;1.34e-20;5!UBERON:0001894;2.47e-15;7!UBERON:0000970;8.58e-12;20!UBERON:0002104;2.90e-11;21!UBERON:0000020;2.41e-10;23!UBERON:0001032;6.10e-10;24!UBERON:0004456;6.10e-10;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,8.82e-51,2;UBERON:0002757,8.82e-51,2;UBERON:0010134,8.82e-51,2;UBERON:0005408,8.82e-51,2;UBERON:0001899,8.82e-51,2;UBERON:0003296,5.23e-26,4;UBERON:0010133,5.23e-26,4;UBERON:0002784,5.23e-26,4;UBERON:0000966,2.58e-17,6;UBERON:0005388,2.58e-17,6;UBERON:0001802,2.58e-17,6;UBERON:0001894,2.47e-15,7;UBERON:0006222,2.47e-15,7;UBERON:0000970,3.00e-11,21;UBERON:0002104,3.00e-11,21;UBERON:0000020,6.29e-10,24;UBERON:0001032,6.29e-10,24;UBERON:0004456,6.29e-10,24;UBERON:0003056,8.00e-07,61 | |||
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| ||
|short_description=p6@GNGT2 | |||
}} | }} |
Latest revision as of 20:01, 15 September 2015
Short description: | p6@GNGT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GNGT2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000300406, ENST00000511277, ENST00000511673, NM_001198755, NM_001198756, NM_031498, uc002ioo.1_5end |
EntrezGene: | GNGT2 |
HGNC: | 4412 |
UniProt: | O14610 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 8.82e-51 | 2 |
regional part of epithalamus | 8.82e-51 | 2 |
secretory circumventricular organ | 8.82e-51 | 2 |
circumventricular organ | 8.82e-51 | 2 |
epithalamus | 8.82e-51 | 2 |
gland of diencephalon | 5.23e-26 | 4 |
neuroendocrine gland | 5.23e-26 | 4 |
regional part of diencephalon | 5.23e-26 | 4 |
retina | 2.58e-17 | 6 |
photoreceptor array | 2.58e-17 | 6 |
posterior segment of eyeball | 2.58e-17 | 6 |
diencephalon | 2.47e-15 | 7 |
future diencephalon | 2.47e-15 | 7 |
eye | 3.00e-11 | 21 |
visual system | 3.00e-11 | 21 |
sense organ | 6.29e-10 | 24 |
sensory system | 6.29e-10 | 24 |
entire sense organ system | 6.29e-10 | 24 |
pre-chordal neural plate | 8.00e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.92e-07 | 4 |