FFCP PHASE1:Hg19::chr10:23481233..23481249,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=256297 | |EntrezGene=256297 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23734 | |HGNC=23734 | ||
|TSSclassifier=strong | |||
|UniProt=Q7RTS3 | |UniProt=Q7RTS3 | ||
|association_with_transcript=-6bp_to_ENST00000376504_5end | |association_with_transcript=-6bp_to_ENST00000376504_5end | ||
|cluster_id=chr10:23481233..23481249,+ | |||
|coexpression_cluster_id=C27 | |coexpression_cluster_id=C27 | ||
|description=CAGE_peak_1_at_PTF1A_5end | |description=CAGE_peak_1_at_PTF1A_5end | ||
|id=chr10:23481233..23481249,+ | |id=chr10:23481233..23481249,+ | ||
|ontology_enrichment_celltype=CL:0000039!4.65e-08!7;CL:0000586!4.65e-08!7 | |ontology_enrichment_celltype=CL:0000039!4.65e-08!7;CL:0000586!4.65e-08!7 | ||
|ontology_enrichment_celltype_v019=CL:1000415;3.02e-11;2!CL:0002577;7.76e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,3.02e-11,2;CL:0002577,7.26e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.78e-18;10!UBERON:0005564;2.78e-18;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000473!2.68e-18!8;UBERON:0003135!2.98e-13!11;UBERON:0004458!3.19e-08!49;UBERON:0002114!1.70e-07!12;UBERON:0002323!4.72e-07!46;UBERON:0002372!5.45e-07!1;UBERON:0001961!5.45e-07!1;UBERON:0001744!5.45e-07!1;UBERON:0001735!5.45e-07!1;UBERON:0002146!6.12e-07!1;UBERON:0005623!6.12e-07!1;UBERON:0000991!8.13e-07!21;UBERON:0009196!8.13e-07!21;UBERON:0009117!8.13e-07!21;UBERON:0005564!8.13e-07!21 | |ontology_enrichment_uberon=UBERON:0000473!2.68e-18!8;UBERON:0003135!2.98e-13!11;UBERON:0004458!3.19e-08!49;UBERON:0002114!1.70e-07!12;UBERON:0002323!4.72e-07!46;UBERON:0002372!5.45e-07!1;UBERON:0001961!5.45e-07!1;UBERON:0001744!5.45e-07!1;UBERON:0001735!5.45e-07!1;UBERON:0002146!6.12e-07!1;UBERON:0005623!6.12e-07!1;UBERON:0000991!8.13e-07!21;UBERON:0009196!8.13e-07!21;UBERON:0009117!8.13e-07!21;UBERON:0005564!8.13e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.17e-22;8!UBERON:0003135;1.09e-16;11!UBERON:0000991;4.68e-09;21!UBERON:0003101;1.14e-08;22!UBERON:0000079;1.14e-08;22!UBERON:0002114;5.54e-08;2!UBERON:0002323;5.97e-08;45!UBERON:0002110;6.34e-08;3!UBERON:0002553;3.31e-07;52!UBERON:0003133;6.42e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.26e-22,8;UBERON:0003135,1.15e-16,11;UBERON:0002323,7.16e-11,46;UBERON:0003133,2.27e-10,48;UBERON:0004458,3.26e-10,49;UBERON:0003886,2.82e-09,54;UBERON:0000991,4.82e-09,21;UBERON:0009196,4.82e-09,21;UBERON:0009117,4.82e-09,21;UBERON:0005564,4.82e-09,21;UBERON:0004176,1.17e-08,22;UBERON:0003101,1.17e-08,22;UBERON:0000079,1.17e-08,22;UBERON:0005156,1.87e-08,59;UBERON:0000990,1.87e-08,59;UBERON:0002553,3.21e-08,61;UBERON:0002114,5.54e-08,2;UBERON:0002110,6.34e-08,3;UBERON:0006242,6.34e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.1863792589789,0.30607276163049,0,0.901940516486955,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,4.10657903743086,0,0,0,0,0,48.561384394936,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,308.698034437072,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.1418229788853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0.157771562193185,0,0.436350690340377,23.806207823193,0,0,0,0,0,0,0.203977659483963,0,2.94063678511504,0.752122617877125,1.59135266258303,1.07185652062471,0,0,0,0,0,0,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.1863792589789,0.30607276163049,0,0.901940516486955,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,4.10657903743086,0,0,0,0,0,48.561384394936,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,308.698034437072,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.1418229788853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0.157771562193185,0,0.436350690340377,23.806207823193,0,0,0,0,0,0,0.203977659483963,0,2.94063678511504,0.752122617877125,1.59135266258303,1.07185652062471,0,0,0,0,0,0,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@PTF1A | |short_description=p1@PTF1A | ||
}} | }} |
Latest revision as of 15:36, 17 September 2015
Short description: | p1@PTF1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTF1A_5end |
Coexpression cluster: | C27_pancreas_temporal_duodenum_salivary_ductus_umbilical_lung |
Association with transcript: | -6bp_to_ENST00000376504_5end |
EntrezGene: | PTF1A |
HGNC: | 23734 |
UniProt: | Q7RTS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 3.02e-11 | 2 |
placental epithelial cell | 7.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.26e-22 | 8 |
male reproductive organ | 1.15e-16 | 11 |
body cavity | 7.16e-11 | 46 |
reproductive organ | 2.27e-10 | 48 |
body cavity or lining | 3.26e-10 | 49 |
body cavity precursor | 2.82e-09 | 54 |
gonad | 4.82e-09 | 21 |
indifferent external genitalia | 4.82e-09 | 21 |
indifferent gonad | 4.82e-09 | 21 |
gonad primordium | 4.82e-09 | 21 |
external genitalia | 1.17e-08 | 22 |
male organism | 1.17e-08 | 22 |
male reproductive system | 1.17e-08 | 22 |
reproductive structure | 1.87e-08 | 59 |
reproductive system | 1.87e-08 | 59 |
anatomical cavity | 3.21e-08 | 61 |
duodenum | 5.54e-08 | 2 |
gallbladder | 6.34e-08 | 3 |
gall bladder primordium | 6.34e-08 | 3 |