FFCP PHASE1:Hg19::chr18:52495804..52495818,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:52495804..52495818,+
|short_description=p2@RAB27B
|description=CAGE_peak_2_at_RAB27B_5end
|association_with_transcript=-21bp_to_uc002lfr.2_5end
|EntrezGe...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5874 | |EntrezGene=5874 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9767 | |HGNC=9767 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-21bp_to_uc002lfr.2_5end | |||
|cluster_id=chr18:52495804..52495818,+ | |||
|coexpression_cluster_id=C64 | |||
|description=CAGE_peak_2_at_RAB27B_5end | |||
|id=chr18:52495804..52495818,+ | |||
|ontology_enrichment_celltype=CL:0000359!6.05e-08!32;CL:0000192!1.20e-07!42;CL:0000514!1.20e-07!42;CL:0000680!2.34e-07!57;CL:0000056!2.34e-07!57;CL:0000355!2.34e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000097;5.51e-12;5!CL:0000569;5.90e-09;4!CL:0000134;1.41e-07;55!CL:0000515;8.83e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,5.54e-12,5;CL:0002028,5.54e-12,5;CL:0000569,6.05e-09,4;CL:0000011,6.05e-09,4;CL:0000359,5.68e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000011;5.90e-09;4 | |||
|ontology_enrichment_disease=DOID:2394!3.75e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.20e-21;14!DOID:120;8.00e-11;27!DOID:193;7.68e-10;29!DOID:0060084;1.07e-07;3!DOID:127;1.07e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.80e-21,14;DOID:120,7.72e-11,27;DOID:193,7.43e-10,29;DOID:0060084,1.10e-07,3;DOID:127,1.10e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000926!6.32e-07!448;UBERON:0004120!6.32e-07!448;UBERON:0006603!6.32e-07!448;UBERON:0001135!6.87e-07!15;UBERON:0001134!7.56e-07!61;UBERON:0002036!7.56e-07!61;UBERON:0003082!7.56e-07!61;UBERON:0002385!8.14e-07!63;UBERON:0001015!8.14e-07!63;UBERON:0000383!8.14e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000992;7.84e-13;13!UBERON:0002118;1.19e-11;5!UBERON:0002119;1.40e-09;4!UBERON:0000178;6.04e-08;15!UBERON:0000179;6.04e-08;15!UBERON:0000463;6.04e-08;15!UBERON:0003134;2.07e-07;33!UBERON:0000991;3.86e-07;21!UBERON:0002418;9.19e-07;3!UBERON:0004755;9.19e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000992,7.66e-13,13;UBERON:0002118,1.20e-11,5;UBERON:0002119,1.35e-09,4;UBERON:0000178,6.79e-08,15;UBERON:0000179,6.79e-08,15;UBERON:0000463,6.79e-08,15;UBERON:0003100,2.42e-07,41;UBERON:0003134,3.13e-07,37;UBERON:0000474,3.13e-07,37;UBERON:0000991,3.81e-07,21;UBERON:0009196,3.81e-07,21;UBERON:0009117,3.81e-07,21;UBERON:0005564,3.81e-07,21;UBERON:0004176,9.91e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,3.09415882400117,2.65117900582333,2.01697543935533,0,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0.447830948479849,0.32389366601898,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0.790152254325231,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,1.01392563272577,0,0,0,0,0,0.0654895377488563,0.728590576585084,0,0,0,0,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,3.70745706277013,0,0,0.560677600142307,0,0.24666754841716,1.24484414159907,0.269421344139376,0.653847612453835,0,0,0,0,0,0.149448680551801,0,0,0,0.61246251376468,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0.45071417671979,0.113432183160021,0,0.213557388818567,0,0,0,4.3798891807757,3.90845398296339,0,0,0,0,0.161646056818812,0.710019185033229,1.5112814734146,0.169560592310488,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.723033089650446,0.110293972732394,0.435758888184812,0.71181185733329,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,173.417459739372,142.638463101426,17.6228898209656,16.8620345497845,16.1590314785766,0,0,0,0,0,0,0,0,0,0.1466765716419,1.42198887333556,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,24.4165895418265,12.2014684204041,8.09781228574662,0,0,0,0.479249710983165,3.44585807502342,0,2.75084482668401,6.78071864416265,3.22309733831812,0,0,0,0,0,0,0,0,0,1.49801404789436,0,2.07207756718018,0.24538298343828,0,0.542530047399471,0,0,0,0,0.300946099727719,2.27407504055985,0,0,0,0.260650843404249,0,0,0.82707210449155,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0.462629081407967,0.177561725313127,1.06765302817952,7.78881643775432,0.929683027679674,0,0,0.368323955743585,0.803701137152247,2.73136752010076,0.655622074797121,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0.308097234229289,0.307007349452259,0,0.322260734604821,0,0.0852266274161009,0,0.661139661443912,0.384380134730212,0.127612712494584,1.4162089319777,1.39453664789186,0.94443704049192,2.7881490806424,2.7723022215848,0.532306030317022,1.73986598415015,0,1.43124886741991,0.372158369359667,0.316379424718726,0.190630193923825,0,0,4.77304871888905,0,0.179872457583315,1.37268514868027,1.41374882814824,1.41527737101321,1.58510321173008,0.421258456238981,0,4.14312932373184,1.05650146756755,0.272999822815972,0,0,2.75682671773062,0.66343897524122,0,0,0,0.202910376962704,0,0,3.72869515730534,0,0,0.709522128141196,0,0.987884678879706,0,0,0,0,0,0.282431402330337,0.43050537267123,0,0,0.459446800413919,10.6563997938756,8.41100927856613,3.41788312304498,4.04994018278241,3.29089818468955,6.48473311192717,7.56044012133361,9.51750211553125,0,0,0,0,0,0,0,2.79411120005943,0,2.32840940996271,0,0.280797178113459,0,0,0,1.35433422241283,0,0,0,0.343505344755765,0,0,0,0.390776190804081,47.8858619099817,0,15.1455179946551,1.99843180798692,0,0.18714054040822,0,0,0,0,0.95497793895076,0,0.921482106297696,0,0.281338832821026,0.111308705022906,0,0,0,0,0,0,0,0,0.449341755736634,0.716084698702437,0.511572370226872,0,0,0,0,0,0,1.5625665665114,7.69647999966522,0,0,0.508507300585533,0.236387681767936,0,0,0,0,0,0,0,0,0,0,2.92789862985067,0.307801034015188,2.62066728448103,0,0,0,0.638002319463839,0.183195186803725,0,0,3.61054589708557,1.16348177330109,0,0,0.167821586975843,0,3.81447789552909,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,112.892876483353,0,0,0,0,0,0,1.32930774541437,0.330991955875499,0,0,0,0,0,0.293977192243133,0,0.17472666824203,0,0.19351266257817,0.219267951258557,0.246346371159628,0.969890164884194,5.47187985487302,0,0.548167698587004,0,0.316553979779393,0,0.400794101257669,0.426905989478705,0.599428828746391,0,0,0,0,0.124252535565433,1.64985824231757,0.407712618220842,0,0,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0.121499113316049,0.335434687599266,0,0.0524545881349981,0.105600336519406,0,0.191915197319445,0,0,0,13.5749900438428,10.3706578944152,46.3754051355361,0,0.082092520749339,0,0.339936274560377,0,2.65013777824443,0,0,1.88195521672762,0.704815022316672,0.320362237703084,1.10043013569766,0.414239055347196,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0.470531639396343,0,0,1.04478362020812,0.233713309847224,0.554805861502613,1.51522404220071,1.50940741051545,4.44905610798268,5.03448150473232,3.4783112465545,3.41961841282117,19.8125900986109,19.274908826808,10.7952746919265,18.6315548251511,7.87941794897625,2.12673371646396,0.521745061811734,12.3211239377719,4.18885733385675,34.9908830556009,20.9125958082943,4.29642228169954,22.2736204741677,11.9428766609585,0,0,0,0,0,0,0,0.226705925512272,0,0,0.179088841081487,0.617602894321944,0.219284049578707,0.176689145945881,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0.211312123358627,0,0,0,0,0.920529751259204,0.559518030877778,0.622077260032973,0,0,0,0.327628914576042,0,0,0,0,0,0,0,0,0.6124909547064,0.0642292250964595,0,0,0,0,0,0,0,0.981477185010256,0,1.28400018965175,0,0,2.0710797781803,0,0,0.20170506870352,0,0,0.327543835020193,0.591424344868181,0.0675375846183947,0,0,0,0,0.548257766857182,0.496211178389294,0,0.127762427639595,0,0,0,0,0,0,0.342976018874837,0.339848664884159,0,0,0.444925607568277,0.706437835654626,0,0,0,0.215927591218621,0,0.0714765441766563,0,0,0,0,1.86494547746733,0.85359238546975,3.45629830907046,0.860454717640555,2.60330401607244,3.49374959512547,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.308696632431779,0,0,0,0.235676547101626,0,0,0,0,0.187967835959707,0.580120991762195,0,0.178553938605658,0,0.561689566824178,0.730336388246517,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0.653150243690884,0.342233301085281,0.673520530145875,0.286888821570705,0,0.162806537221949,1.70763753404345,0,0.269475606319761,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,3.09415882400117,2.65117900582333,2.01697543935533,0,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0.447830948479849,0.32389366601898,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0.790152254325231,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,1.01392563272577,0,0,0,0,0,0.0654895377488563,0.728590576585084,0,0,0,0,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,3.70745706277013,0,0,0.560677600142307,0,0.24666754841716,1.24484414159907,0.269421344139376,0.653847612453835,0,0,0,0,0,0.149448680551801,0,0,0,0.61246251376468,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0.45071417671979,0.113432183160021,0,0.213557388818567,0,0,0,4.3798891807757,3.90845398296339,0,0,0,0,0.161646056818812,0.710019185033229,1.5112814734146,0.169560592310488,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.723033089650446,0.110293972732394,0.435758888184812,0.71181185733329,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,173.417459739372,142.638463101426,17.6228898209656,16.8620345497845,16.1590314785766,0,0,0,0,0,0,0,0,0,0.1466765716419,1.42198887333556,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,24.4165895418265,12.2014684204041,8.09781228574662,0,0,0,0.479249710983165,3.44585807502342,0,2.75084482668401,6.78071864416265,3.22309733831812,0,0,0,0,0,0,0,0,0,1.49801404789436,0,2.07207756718018,0.24538298343828,0,0.542530047399471,0,0,0,0,0.300946099727719,2.27407504055985,0,0,0,0.260650843404249,0,0,0.82707210449155,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0.462629081407967,0.177561725313127,1.06765302817952,7.78881643775432,0.929683027679674,0,0,0.368323955743585,0.803701137152247,2.73136752010076,0.655622074797121,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0.308097234229289,0.307007349452259,0,0.322260734604821,0,0.0852266274161009,0,0.661139661443912,0.384380134730212,0.127612712494584,1.4162089319777,1.39453664789186,0.94443704049192,2.7881490806424,2.7723022215848,0.532306030317022,1.73986598415015,0,1.43124886741991,0.372158369359667,0.316379424718726,0.190630193923825,0,0,4.77304871888905,0,0.179872457583315,1.37268514868027,1.41374882814824,1.41527737101321,1.58510321173008,0.421258456238981,0,4.14312932373184,1.05650146756755,0.272999822815972,0,0,2.75682671773062,0.66343897524122,0,0,0,0.202910376962704,0,0,3.72869515730534,0,0,0.709522128141196,0,0.987884678879706,0,0,0,0,0,0.282431402330337,0.43050537267123,0,0,0.459446800413919,10.6563997938756,8.41100927856613,3.41788312304498,4.04994018278241,3.29089818468955,6.48473311192717,7.56044012133361,9.51750211553125,0,0,0,0,0,0,0,2.79411120005943,0,2.32840940996271,0,0.280797178113459,0,0,0,1.35433422241283,0,0,0,0.343505344755765,0,0,0,0.390776190804081,47.8858619099817,0,15.1455179946551,1.99843180798692,0,0.18714054040822,0,0,0,0,0.95497793895076,0,0.921482106297696,0,0.281338832821026,0.111308705022906,0,0,0,0,0,0,0,0,0.449341755736634,0.716084698702437,0.511572370226872,0,0,0,0,0,0,1.5625665665114,7.69647999966522,0,0,0.508507300585533,0.236387681767936,0,0,0,0,0,0,0,0,0,0,2.92789862985067,0.307801034015188,2.62066728448103,0,0,0,0.638002319463839,0.183195186803725,0,0,3.61054589708557,1.16348177330109,0,0,0.167821586975843,0,3.81447789552909,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,112.892876483353,0,0,0,0,0,0,1.32930774541437,0.330991955875499,0,0,0,0,0,0.293977192243133,0,0.17472666824203,0,0.19351266257817,0.219267951258557,0.246346371159628,0.969890164884194,5.47187985487302,0,0.548167698587004,0,0.316553979779393,0,0.400794101257669,0.426905989478705,0.599428828746391,0,0,0,0,0.124252535565433,1.64985824231757,0.407712618220842,0,0,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0.121499113316049,0.335434687599266,0,0.0524545881349981,0.105600336519406,0,0.191915197319445,0,0,0,13.5749900438428,10.3706578944152,46.3754051355361,0,0.082092520749339,0,0.339936274560377,0,2.65013777824443,0,0,1.88195521672762,0.704815022316672,0.320362237703084,1.10043013569766,0.414239055347196,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0.470531639396343,0,0,1.04478362020812,0.233713309847224,0.554805861502613,1.51522404220071,1.50940741051545,4.44905610798268,5.03448150473232,3.4783112465545,3.41961841282117,19.8125900986109,19.274908826808,10.7952746919265,18.6315548251511,7.87941794897625,2.12673371646396,0.521745061811734,12.3211239377719,4.18885733385675,34.9908830556009,20.9125958082943,4.29642228169954,22.2736204741677,11.9428766609585,0,0,0,0,0,0,0,0.226705925512272,0,0,0.179088841081487,0.617602894321944,0.219284049578707,0.176689145945881,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0.211312123358627,0,0,0,0,0.920529751259204,0.559518030877778,0.622077260032973,0,0,0,0.327628914576042,0,0,0,0,0,0,0,0,0.6124909547064,0.0642292250964595,0,0,0,0,0,0,0,0.981477185010256,0,1.28400018965175,0,0,2.0710797781803,0,0,0.20170506870352,0,0,0.327543835020193,0.591424344868181,0.0675375846183947,0,0,0,0,0.548257766857182,0.496211178389294,0,0.127762427639595,0,0,0,0,0,0,0.342976018874837,0.339848664884159,0,0,0.444925607568277,0.706437835654626,0,0,0,0.215927591218621,0,0.0714765441766563,0,0,0,0,1.86494547746733,0.85359238546975,3.45629830907046,0.860454717640555,2.60330401607244,3.49374959512547,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.308696632431779,0,0,0,0.235676547101626,0,0,0,0,0.187967835959707,0.580120991762195,0,0.178553938605658,0,0.561689566824178,0.730336388246517,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0.653150243690884,0.342233301085281,0.673520530145875,0.286888821570705,0,0.162806537221949,1.70763753404345,0,0.269475606319761,0,0,0,0,0,0 | ||
|short_description=p2@RAB27B | |||
}} | }} |
Latest revision as of 20:16, 19 September 2015
Short description: | p2@RAB27B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAB27B_5end |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | -21bp_to_uc002lfr.2_5end |
EntrezGene: | RAB27B |
HGNC: | 9767 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 5.54e-12 | 5 |
basophil mast progenitor cell | 5.54e-12 | 5 |
cardiac mesenchymal cell | 6.05e-09 | 4 |
migratory trunk neural crest cell | 6.05e-09 | 4 |
vascular associated smooth muscle cell | 5.68e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
female gonad | 7.66e-13 | 13 |
right ovary | 1.20e-11 | 5 |
left ovary | 1.35e-09 | 4 |
blood | 6.79e-08 | 15 |
haemolymphatic fluid | 6.79e-08 | 15 |
organism substance | 6.79e-08 | 15 |
female organism | 2.42e-07 | 41 |
female reproductive organ | 3.13e-07 | 37 |
female reproductive system | 3.13e-07 | 37 |
gonad | 3.81e-07 | 21 |
indifferent external genitalia | 3.81e-07 | 21 |
indifferent gonad | 3.81e-07 | 21 |
gonad primordium | 3.81e-07 | 21 |
external genitalia | 9.91e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.80e-21 | 14 |
female reproductive organ cancer | 7.72e-11 | 27 |
reproductive organ cancer | 7.43e-10 | 29 |
cell type benign neoplasm | 1.10e-07 | 3 |
leiomyoma | 1.10e-07 | 3 |