FFCP PHASE1:Hg19::chr18:74961699..74961708,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr18:74961699..74961708,+
|short_description=p5@GALR1
|description=CAGE_peak_5_at_GALR1_5end
|association_with_transcript=-299bp_to_NM_001480,uc002lms.3_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2587 | |EntrezGene=2587 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=4132 | |HGNC=4132 | ||
|TSSclassifier=strong | |||
|UniProt=P47211 | |UniProt=P47211 | ||
|association_with_transcript=-299bp_to_NM_001480,uc002lms.3_5end | |||
|cluster_id=chr18:74961699..74961708,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_5_at_GALR1_5end | |||
|id=chr18:74961699..74961708,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000138;4.27e-34;6!CL:0000153;2.62e-23;9!CL:0000447;2.62e-23;9!CL:0000327;1.22e-14;15!CL:0000499;1.52e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,4.27e-34,6;CL:0000138,4.27e-34,6;CL:0000153,2.62e-23,9;CL:0000447,2.62e-23,9;CL:0000327,1.22e-14,15;CL:0000499,1.52e-08,28;CL:0000151,5.81e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!3.08e-14!1;DOID:4549!3.08e-14!1;DOID:5861!3.08e-14!1;DOID:6496!3.08e-14!1 | |||
|ontology_enrichment_disease_v019=DOID:3371;5.42e-195;1!DOID:4549;5.42e-195;1!DOID:5861;5.42e-195;1!DOID:6496;5.42e-195;1!DOID:201;4.27e-34;6!DOID:0060100;4.27e-34;6!DOID:1115;2.29e-11;20 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,5.42e-195,1;DOID:4549,5.42e-195,1;DOID:5861,5.42e-195,1;DOID:6496,5.42e-195,1;DOID:201,4.27e-34,6;DOID:0060100,4.27e-34,6;DOID:1115,2.29e-11,20 | |||
|ontology_enrichment_uberon=UBERON:0003080!1.39e-27!42;UBERON:0003056!8.42e-23!61;UBERON:0002780!8.62e-23!41;UBERON:0001890!8.62e-23!41;UBERON:0006240!8.62e-23!41;UBERON:0001872!1.07e-22!5;UBERON:0002791!2.42e-22!33;UBERON:0001893!1.10e-21!34;UBERON:0001950!7.16e-21!20;UBERON:0001049!3.61e-20!57;UBERON:0005068!3.61e-20!57;UBERON:0006241!3.61e-20!57;UBERON:0007135!3.61e-20!57;UBERON:0002616!1.85e-19!59;UBERON:0002619!4.89e-19!22;UBERON:0001869!9.89e-18!32;UBERON:0000073!6.14e-17!94;UBERON:0001016!6.14e-17!94;UBERON:0000956!8.21e-17!25;UBERON:0000203!8.21e-17!25;UBERON:0002020!1.09e-16!34;UBERON:0003528!1.09e-16!34;UBERON:0007023!1.31e-16!115;UBERON:0000955!2.88e-16!69;UBERON:0006238!2.88e-16!69;UBERON:0003075!7.07e-16!86;UBERON:0007284!7.07e-16!86;UBERON:0005743!1.11e-15!86;UBERON:0002346!4.04e-15!90;UBERON:0006122!3.50e-14!1;UBERON:0002902!5.85e-14!1;UBERON:0009899!5.85e-14!1;UBERON:0002336!1.42e-13!1;UBERON:0001018!1.42e-13!1;UBERON:0002473!1.42e-13!1;UBERON:0005340!1.42e-13!1;UBERON:0002316!1.42e-13!1;UBERON:0003544!1.42e-13!1;UBERON:0001020!1.42e-13!1;UBERON:0005970!1.42e-13!1;UBERON:0002437!1.42e-13!1;UBERON:0001017!1.44e-13!82;UBERON:0002581!1.61e-13!1;UBERON:0001882!1.83e-13!1;UBERON:0005403!1.83e-13!1;UBERON:0000033!1.24e-10!123;UBERON:0000153!4.41e-10!129;UBERON:0007811!4.41e-10!129;UBERON:0000200!3.42e-09!6;UBERON:0004121!6.98e-09!169;UBERON:0000924!1.21e-08!173;UBERON:0006601!1.21e-08!173;UBERON:0002950!9.87e-08!2;UBERON:0001891!9.87e-08!2;UBERON:0009616!9.87e-08!2;UBERON:0000007!1.05e-07!2;UBERON:0001255!1.54e-07!2;UBERON:0001556!1.54e-07!2;UBERON:0005162!1.99e-07!2;UBERON:0000122!1.99e-07!2;UBERON:0001871!3.90e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.39e-66;3!UBERON:0004755;2.39e-66;3!UBERON:0001474;1.85e-12;18!UBERON:0004765;4.34e-09;26!UBERON:0001434;2.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.39e-66,3;UBERON:0004755,2.39e-66,3 | |||
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|short_description=p5@GALR1 | |||
}} | }} |
Latest revision as of 18:40, 24 September 2015
Short description: | p5@GALR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GALR1_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -299bp_to_NM_001480, uc002lms.3_5end |
EntrezGene: | GALR1 |
HGNC: | 4132 |
UniProt: | P47211 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 4.27e-34 | 6 |
chondrocyte | 4.27e-34 | 6 |
GAG secreting cell | 2.62e-23 | 9 |
carbohydrate secreting cell | 2.62e-23 | 9 |
extracellular matrix secreting cell | 1.22e-14 | 15 |
stromal cell | 1.52e-08 | 28 |
secretory cell | 5.81e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.39e-66 | 3 |
skeletal tissue | 2.39e-66 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 5.42e-195 | 1 |
extraosseous chondrosarcoma | 5.42e-195 | 1 |
myxoid chondrosarcoma | 5.42e-195 | 1 |
extraskeletal myxoid chondrosarcoma | 5.42e-195 | 1 |
connective tissue cancer | 4.27e-34 | 6 |
musculoskeletal system cancer | 4.27e-34 | 6 |
sarcoma | 2.29e-11 | 20 |