FFCP PHASE1:Hg19::chr1:223853388..223853408,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1485 | |HGNC=1485 | ||
|TSSclassifier=strong | |||
|UniProt=B1B154 | |UniProt=B1B154 | ||
|association_with_transcript=16bp_to_ENST00000366873_5end | |association_with_transcript=16bp_to_ENST00000366873_5end | ||
|cluster_id=chr1:223853388..223853408,- | |||
|coexpression_cluster_id=C94 | |coexpression_cluster_id=C94 | ||
|description=CAGE_peak_1_at_CAPN8_5end | |description=CAGE_peak_1_at_CAPN8_5end | ||
|id=chr1:223853388..223853408,- | |id=chr1:223853388..223853408,- | ||
|ontology_enrichment_celltype=CL:0002327!2.30e-08!4 | |ontology_enrichment_celltype=CL:0002327!2.30e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0002178;6.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,6.59e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006595;2.61e-09;86!UBERON:0008947;6.00e-08;29 | |||
|ontology_enrichment_disease=DOID:305!5.06e-11!106;DOID:5093!1.62e-09!4;DOID:1612!1.62e-09!4;DOID:299!1.10e-08!25;DOID:0050615!7.77e-07!16;DOID:0050687!8.19e-07!143 | |ontology_enrichment_disease=DOID:305!5.06e-11!106;DOID:5093!1.62e-09!4;DOID:1612!1.62e-09!4;DOID:299!1.10e-08!25;DOID:0050615!7.77e-07!16;DOID:0050687!8.19e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:5093;8.88e-17;4!DOID:1612;8.88e-17;4!DOID:299;4.96e-15;25!DOID:3493;1.38e-09;2!DOID:3119;1.93e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,8.71e-17,4;DOID:1612,8.71e-17,4;DOID:299,5.13e-15,25;DOID:3493,1.54e-09,2;DOID:3119,1.83e-07,14;DOID:305,2.33e-07,106 | |||
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|ontology_enrichment_uberon_v019=UBERON:0005409;2.03e-23;22!UBERON:0000160;1.22e-16;17!UBERON:0004921;4.18e-13;33!UBERON:0000310;4.63e-10;10!UBERON:0000059;3.88e-09;11!UBERON:0003127;3.90e-09;2!UBERON:0001443;4.05e-09;11!UBERON:0000945;1.21e-08;5!UBERON:0010039;1.21e-08;5!UBERON:0000915;4.74e-08;52!UBERON:0002108;9.78e-08;4!UBERON:0001155;2.11e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.83e-20,25;UBERON:0000160,1.07e-16,17;UBERON:0004921,1.79e-15,118;UBERON:0001007,9.22e-13,145;UBERON:0001555,9.22e-13,145;UBERON:0007026,9.22e-13,145;UBERON:0004119,5.24e-11,160;UBERON:0000925,5.24e-11,160;UBERON:0006595,5.24e-11,160;UBERON:0000915,1.42e-10,52;UBERON:0000310,4.81e-10,10;UBERON:0003127,2.99e-09,2;UBERON:0000059,3.46e-09,11;UBERON:0001443,4.20e-09,11;UBERON:0005153,4.68e-09,37;UBERON:0002108,9.34e-08,4;UBERON:0001155,1.89e-07,9;UBERON:0001046,4.46e-07,19;UBERON:0005157,9.71e-07,47 | |||
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| ||
|short_description=p1@CAPN8 | |short_description=p1@CAPN8 | ||
}} | }} |
Latest revision as of 22:06, 15 September 2015
Short description: | p1@CAPN8 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAPN8_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | 16bp_to_ENST00000366873_5end |
EntrezGene: | NA |
HGNC: | 1485 |
UniProt: | B1B154 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 6.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.83e-20 | 25 |
intestine | 1.07e-16 | 17 |
subdivision of digestive tract | 1.79e-15 | 118 |
digestive system | 9.22e-13 | 145 |
digestive tract | 9.22e-13 | 145 |
primitive gut | 9.22e-13 | 145 |
endoderm-derived structure | 5.24e-11 | 160 |
endoderm | 5.24e-11 | 160 |
presumptive endoderm | 5.24e-11 | 160 |
thoracic segment of trunk | 1.42e-10 | 52 |
breast | 4.81e-10 | 10 |
open tracheal system trachea | 2.99e-09 | 2 |
large intestine | 3.46e-09 | 11 |
chest | 4.20e-09 | 11 |
epithelial bud | 4.68e-09 | 37 |
small intestine | 9.34e-08 | 4 |
colon | 1.89e-07 | 9 |
hindgut | 4.46e-07 | 19 |
epithelial fold | 9.71e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 8.71e-17 | 4 |
breast cancer | 8.71e-17 | 4 |
adenocarcinoma | 5.13e-15 | 25 |
signet ring cell adenocarcinoma | 1.54e-09 | 2 |
gastrointestinal system cancer | 1.83e-07 | 14 |
carcinoma | 2.33e-07 | 106 |