FFCP PHASE1:Hg19::chr1:31353622..31353644,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9672 | |EntrezGene=9672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10660 | |HGNC=10660 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-6bp_to_ENST00000487984_5end | |association_with_transcript=-6bp_to_ENST00000487984_5end | ||
|cluster_id=chr1:31353622..31353644,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_19_at_SDC3_5end | |description=CAGE_peak_19_at_SDC3_5end | ||
|id=chr1:31353622..31353644,- | |id=chr1:31353622..31353644,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;7.05e-34;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.47e-09,8 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.27e-23;3 | |||
|ontology_enrichment_disease=DOID:2355!5.13e-23!1;DOID:74!3.24e-12!2;DOID:1287!9.63e-07!4 | |ontology_enrichment_disease=DOID:2355!5.13e-23!1;DOID:74!3.24e-12!2;DOID:1287!9.63e-07!4 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001874!2.62e-23!1;UBERON:0001894!1.40e-13!7;UBERON:0006222!1.40e-13!7;UBERON:0001905!2.07e-12!2;UBERON:0002757!2.07e-12!2;UBERON:0010134!2.07e-12!2;UBERON:0002784!2.07e-12!2;UBERON:0005408!2.07e-12!2;UBERON:0001899!2.07e-12!2;UBERON:0001897!2.59e-12!2;UBERON:0003056!4.64e-09!61;UBERON:0005743!5.03e-09!86;UBERON:0002780!9.23e-09!41;UBERON:0001890!9.23e-09!41;UBERON:0006240!9.23e-09!41;UBERON:0005383!1.12e-08!3;UBERON:0005382!1.12e-08!3;UBERON:0003080!1.45e-08!42;UBERON:0000073!3.52e-08!94;UBERON:0001016!3.52e-08!94;UBERON:0003296!7.70e-07!4;UBERON:0010133!7.70e-07!4;UBERON:0000369!8.14e-07!4;UBERON:0002435!8.14e-07!4;UBERON:0000204!8.14e-07!4;UBERON:0010082!8.14e-07!4 | |ontology_enrichment_uberon=UBERON:0001874!2.62e-23!1;UBERON:0001894!1.40e-13!7;UBERON:0006222!1.40e-13!7;UBERON:0001905!2.07e-12!2;UBERON:0002757!2.07e-12!2;UBERON:0010134!2.07e-12!2;UBERON:0002784!2.07e-12!2;UBERON:0005408!2.07e-12!2;UBERON:0001899!2.07e-12!2;UBERON:0001897!2.59e-12!2;UBERON:0003056!4.64e-09!61;UBERON:0005743!5.03e-09!86;UBERON:0002780!9.23e-09!41;UBERON:0001890!9.23e-09!41;UBERON:0006240!9.23e-09!41;UBERON:0005383!1.12e-08!3;UBERON:0005382!1.12e-08!3;UBERON:0003080!1.45e-08!42;UBERON:0000073!3.52e-08!94;UBERON:0001016!3.52e-08!94;UBERON:0003296!7.70e-07!4;UBERON:0010133!7.70e-07!4;UBERON:0000369!8.14e-07!4;UBERON:0002435!8.14e-07!4;UBERON:0000204!8.14e-07!4;UBERON:0010082!8.14e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.60e-14;5!UBERON:0005388;1.60e-14;5!UBERON:0001802;1.60e-14;5!UBERON:0000970;2.41e-14;20!UBERON:0002104;1.02e-13;21!UBERON:0000020;1.25e-12;23!UBERON:0001032;3.75e-12;24!UBERON:0004456;3.75e-12;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.02e-13,21;UBERON:0002104,1.02e-13,21;UBERON:0000966,2.45e-12,6;UBERON:0005388,2.45e-12,6;UBERON:0001802,2.45e-12,6;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24 | |||
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|short_description=p19@SDC3 | |short_description=p19@SDC3 | ||
}} | }} |
Latest revision as of 12:46, 17 September 2015
Short description: | p19@SDC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_SDC3_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | -6bp_to_ENST00000487984_5end |
EntrezGene: | SDC3 |
HGNC: | 10660 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.47e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
eye | 1.02e-13 | 21 |
visual system | 1.02e-13 | 21 |
retina | 2.45e-12 | 6 |
photoreceptor array | 2.45e-12 | 6 |
posterior segment of eyeball | 2.45e-12 | 6 |
sense organ | 3.75e-12 | 24 |
sensory system | 3.75e-12 | 24 |
entire sense organ system | 3.75e-12 | 24 |