FFCP PHASE1:Hg19::chr2:70781087..70781098,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7039 | |EntrezGene=7039 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11765 | |HGNC=11765 | ||
|TSSclassifier=strong | |||
|UniProt=F8WA74,Q9UKM3 | |UniProt=F8WA74,Q9UKM3 | ||
|association_with_transcript=6bp_to_ENST00000394241,uc002sgs.3,uc002sgt.3,uc002sgu.2,uc002sgv.2,uc002sgw.2_5end | |association_with_transcript=6bp_to_ENST00000394241,uc002sgs.3,uc002sgt.3,uc002sgu.2,uc002sgv.2,uc002sgw.2_5end | ||
|cluster_id=chr2:70781087..70781098,- | |||
|coexpression_cluster_id=C356 | |coexpression_cluster_id=C356 | ||
|description=CAGE_peak_2_at_TGFA_5end | |description=CAGE_peak_2_at_TGFA_5end | ||
|id=chr2:70781087..70781098,- | |id=chr2:70781087..70781098,- | ||
|ontology_enrichment_celltype=CL:0000066!1.48e-19!254;CL:0002076!1.90e-13!43;CL:0000223!5.71e-13!59;CL:0002368!3.58e-08!13 | |ontology_enrichment_celltype=CL:0000066!1.48e-19!254;CL:0002076!1.90e-13!43;CL:0000223!5.71e-13!59;CL:0002368!3.58e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;9.79e-13;42!CL:0002368;4.01e-11;13!CL:0002159;3.84e-09;14!CL:1000507;4.80e-09;10!CL:1000494;4.80e-09;10!CL:1000497;5.56e-09;17!CL:0002518;5.56e-09;17!CL:0000244;3.13e-07;4!CL:0000731;3.13e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.82e-29,253;CL:0002076,7.33e-16,42;CL:0000223,1.55e-15,58;CL:0002368,4.46e-11,13;CL:0002159,2.93e-09,14;CL:1000507,2.99e-09,10;CL:1000494,2.99e-09,10;CL:1000497,4.89e-09,17;CL:0002518,4.89e-09,17;CL:0000244,3.07e-07,4;CL:0000731,3.07e-07,4;CL:1000449,9.74e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000223;1.58e-08;58 | |||
|ontology_enrichment_disease=DOID:305!5.05e-13!106;DOID:0050687!1.48e-08!143;DOID:299!7.09e-08!25;DOID:1749!1.78e-07!14 | |ontology_enrichment_disease=DOID:305!5.05e-13!106;DOID:0050687!1.48e-08!143;DOID:299!7.09e-08!25;DOID:1749!1.78e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:299;3.68e-10;25!DOID:1749;6.80e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.40e-13,106;DOID:299,3.69e-10,25;DOID:0050687,1.88e-08,143;DOID:1749,3.09e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.29e-12!115;UBERON:0001049!3.18e-10!57;UBERON:0005068!3.18e-10!57;UBERON:0006241!3.18e-10!57;UBERON:0007135!3.18e-10!57;UBERON:0000062!3.50e-09!511;UBERON:0004119!5.98e-09!169;UBERON:0000925!5.98e-09!169;UBERON:0006595!5.98e-09!169;UBERON:0005177!2.48e-08!107;UBERON:0000467!2.71e-08!625;UBERON:0000480!3.59e-08!626;UBERON:0000922!4.80e-08!612;UBERON:0000468!1.35e-07!659;UBERON:0003080!1.70e-07!42;UBERON:0002616!2.10e-07!59;UBERON:0002780!4.37e-07!41;UBERON:0001890!4.37e-07!41;UBERON:0006240!4.37e-07!41;UBERON:0000923!4.76e-07!604;UBERON:0005291!4.76e-07!604;UBERON:0006598!4.76e-07!604;UBERON:0002532!4.76e-07!604;UBERON:0002050!6.15e-07!605;UBERON:0005423!6.15e-07!605 | |ontology_enrichment_uberon=UBERON:0007023!3.29e-12!115;UBERON:0001049!3.18e-10!57;UBERON:0005068!3.18e-10!57;UBERON:0006241!3.18e-10!57;UBERON:0007135!3.18e-10!57;UBERON:0000062!3.50e-09!511;UBERON:0004119!5.98e-09!169;UBERON:0000925!5.98e-09!169;UBERON:0006595!5.98e-09!169;UBERON:0005177!2.48e-08!107;UBERON:0000467!2.71e-08!625;UBERON:0000480!3.59e-08!626;UBERON:0000922!4.80e-08!612;UBERON:0000468!1.35e-07!659;UBERON:0003080!1.70e-07!42;UBERON:0002616!2.10e-07!59;UBERON:0002780!4.37e-07!41;UBERON:0001890!4.37e-07!41;UBERON:0006240!4.37e-07!41;UBERON:0000923!4.76e-07!604;UBERON:0005291!4.76e-07!604;UBERON:0006598!4.76e-07!604;UBERON:0002532!4.76e-07!604;UBERON:0002050!6.15e-07!605;UBERON:0005423!6.15e-07!605 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;4.65e-12;30!UBERON:0001008;4.65e-12;30!UBERON:0004211;4.80e-09;10!UBERON:0009773;4.80e-09;10!UBERON:0001231;4.80e-09;10!UBERON:0004810;4.80e-09;10!UBERON:0000489;5.88e-09;29!UBERON:0000365;2.21e-08;5!UBERON:0000486;9.00e-08;12!UBERON:0002113;1.21e-07;24!UBERON:0011143;1.21e-07;24!UBERON:0005910;7.46e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,2.09e-09,101;UBERON:0004810,2.99e-09,10;UBERON:0006554,1.43e-08,47;UBERON:0000365,2.51e-08,5;UBERON:0001008,2.86e-08,48;UBERON:0000489,4.96e-08,31;UBERON:0005910,8.27e-07,6;UBERON:0004211,9.74e-07,15;UBERON:0009773,9.74e-07,15;UBERON:0001231,9.74e-07,15;UBERON:0001285,9.74e-07,15;UBERON:0007684,9.74e-07,15;UBERON:0004208,9.74e-07,15;UBERON:0002113,9.96e-07,26;UBERON:0003918,9.96e-07,26;UBERON:0011143,9.96e-07,26;UBERON:0005095,9.96e-07,26;UBERON:0007687,9.96e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,1.96597234917155,3.4289707169699,0.123766352960047,0,0,0.602694528023977,0,1.46379839637152,0,0,0,0.572471974262113,0.273748850145768,0,0,0,0,0,0,0,3.67768489791571,4.2168828628955,5.54631015250181,0,0,0,0.553995408531877,0.802177789880567,0.651032612147555,0.223915474239924,0,0.257575567634187,0,0.755751887377619,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0.863077176966451,1.5369642391746,0.709446689665756,0,0,0,0.376484679085209,0,0.224723484445085,0,0,0,0.989553900560148,1.79517291859469,0,0,0.56738522469114,1.24564449799115,1.25624332628372,1.0429658368404,0,0,0,0.632924774881769,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0.654895377488563,3.64295288292542,1.85392221392215,0.649094787309367,1.91542711029194,1.06366368415092,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0,1.31780417436063,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600182192168805,0,0,0,0.506328996723799,0,0,0,0,0,0.302256294682921,0,4.63826047591912,5.72766853240753,6.59650569394709,0.609868530647977,0.397589304964456,0.232387885739037,0.725627385107593,0.756962552626885,0,0,0,0,0,0,0,0,0,0.330881918197182,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.368965315629341,0.857839051492628,2.63400684980701,2.24803506515239,9.4497234066933,4.44424536760942,0,0,0,0,0,1.01056513432752,1.38895653772983,0.190254152234598,0,0.858486162094873,0,0,0,2.81201501960331,2.68771405118175,4.67857820899875,2.7763142037883,4.06887513919547,4.60059214998253,0,0.792435906119034,1.24396869324463,0.576479813667846,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,1.49801404789436,0,2.48649308061621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0.303127571446259,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,3.60911646545913,11.3259616391152,0,0,0,2.70719767744447,4.92898157468254,3.92174884588428,2.92278449306521,2.95544560900052,1.13733384070897,0,0,0,0,0,4.58777291481069,13.2972161428596,2.91037181138832,0,0,0,0,0,0.206082023295445,0,0.165018999841176,4.01985876597321,3.25030123018261,0,0,0,0,0,0,0,0,0,3.47098322258054,4.03599141466723,5.23212121227795,4.14746901507755,0.929691098594572,0,0.6970372701606,0,0,0,0.37064843820784,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0,0,0,0,0,4.61866141082458,4.02181365321472,4.3556393944529,0.188287601553558,4.3050537267123,6.73885902670502,3.54744122829341,5.51336160496703,1.01489521846434,0,0.569647187174163,0.238231775457789,0,1.29694662238543,0,1.58625035258854,0,0,4.16568367167754,0,0.28853842595289,0,0.797131363644112,0,0,0,0,0,0,0,0,0,0.321176150207399,0,0.851692475380653,1.71752672377882,0,0,0,0,0,0,0,0,0,1.8714054040822,0.146508179271894,0,0,0,0.47748896947538,0,0,0,0.422008249231538,0,0.16480387422676,0,0.19924798825107,0.552567831062295,0,2.0453736500431,0,0.622079175323615,4.13394415277704,0.895105873378046,0.511572370226872,0.493217028184668,0,0,0,0.927680981618513,0,0.260427761085233,0.0874599999961957,1.44999915086959,0.796554137998498,0.508507300585533,0.472775363535873,0,0,0,0,0.844175070377856,1.52581736317083,0.221158519862449,0.295547618953547,0.658156191461918,0,1.11538995422883,0.230850775511391,0.341826167541004,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,6.96293612942489,2.93819054686466,0,0,1.99052386215701,0.265372693510018,0.611030144933625,1.18608451472249,0.988511511572023,0.835375596043643,3.03305098413047,0,1.63985112007737,0,1.36965233252463,0,0,1.20990716048664,0.30607276163049,0.063186579628488,0,0.103688191397247,1.99396161812156,0.992975867626496,1.56966459203613,0,3.13070500632772,0.832048038078832,1.21491816834592,1.66587075604442,7.22591414617341,0,0,0.580537987734511,1.75414361006845,1.06750094169172,0.581934098930517,0,0.451961481561065,0.685209623233754,0.19871461170299,0.50648636764703,1.36885967914362,3.36667045056442,0,0.599428828746391,1.00863292007874,0,0,1.4405479798815,2.85780831800495,1.41416420770077,0,0,0,0,0.600420288709789,1.50595916781192,0,0,0,0.279282401272254,0,0,0.798716001995964,0,0,0.268733889946905,0,0,1.26053091691558,1.483485450861,1.28066733322951,0.393709926058995,0,0.795229689809303,1.63444087333891,0.321506296930038,0.137539436597234,0.415440338029185,0.899895566206002,0,0.728994679896296,0.670869375198532,1.02447419488958,1.31136470337495,0.105600336519406,0,3.64638874906946,0,0,0,0,0,0,0,0,0.511164065356265,0,0.293104467356165,0,1.29282956361551,1.98348902614035,1.19760786519031,1.40963004463334,0.213574825135389,0.157204305099666,1.24271716604159,0.496166021811951,0,1.21792598380896,3.19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| ||
|short_description=p2@TGFA | |short_description=p2@TGFA | ||
}} | }} |
Latest revision as of 06:57, 18 September 2015
Short description: | p2@TGFA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TGFA_5end |
Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
Association with transcript: | 6bp_to_ENST00000394241, uc002sgs.3, uc002sgt.3, uc002sgu.2, uc002sgv.2, uc002sgw.2_5end |
EntrezGene: | TGFA |
HGNC: | 11765 |
UniProt: | F8WA74Q9UKM3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.82e-29 | 253 |
endo-epithelial cell | 7.33e-16 | 42 |
endodermal cell | 1.55e-15 | 58 |
respiratory epithelial cell | 4.46e-11 | 13 |
general ecto-epithelial cell | 2.93e-09 | 14 |
kidney tubule cell | 2.99e-09 | 10 |
nephron tubule epithelial cell | 2.99e-09 | 10 |
kidney cell | 4.89e-09 | 17 |
kidney epithelial cell | 4.89e-09 | 17 |
transitional epithelial cell | 3.07e-07 | 4 |
urothelial cell | 3.07e-07 | 4 |
epithelial cell of nephron | 9.74e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 2.09e-09 | 101 |
nephron tubule epithelium | 2.99e-09 | 10 |
urinary system structure | 1.43e-08 | 47 |
urothelium | 2.51e-08 | 5 |
renal system | 2.86e-08 | 48 |
cavitated compound organ | 4.96e-08 | 31 |
transitional epithelium | 8.27e-07 | 6 |
nephron epithelium | 9.74e-07 | 15 |
renal tubule | 9.74e-07 | 15 |
nephron tubule | 9.74e-07 | 15 |
nephron | 9.74e-07 | 15 |
uriniferous tubule | 9.74e-07 | 15 |
nephrogenic mesenchyme | 9.74e-07 | 15 |
kidney | 9.96e-07 | 26 |
kidney mesenchyme | 9.96e-07 | 26 |
upper urinary tract | 9.96e-07 | 26 |
kidney rudiment | 9.96e-07 | 26 |
kidney field | 9.96e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.40e-13 | 106 |
adenocarcinoma | 3.69e-10 | 25 |
cell type cancer | 1.88e-08 | 143 |
squamous cell carcinoma | 3.09e-07 | 14 |