FFCP PHASE1:Hg19::chr4:57897407..57897469,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:57897407..57897469,- | |||
|coexpression_cluster_id=C772 | |coexpression_cluster_id=C772 | ||
|description=CAGE_peak_at_chr4:57897407..57897469,- | |description=CAGE_peak_at_chr4:57897407..57897469,- | ||
|id=chr4:57897407..57897469,- | |id=chr4:57897407..57897469,- | ||
|ontology_enrichment_celltype=CL:0000055!6.49e-15!180;CL:0000222!1.35e-14!119;CL:0000183!1.60e-10!59;CL:0000192!1.89e-10!42;CL:0000514!1.89e-10!42;CL:0000359!3.52e-10!32;CL:0000680!1.31e-09!57;CL:0000056!1.31e-09!57;CL:0000355!1.31e-09!57;CL:0000187!3.55e-09!54;CL:0000057!8.66e-09!75;CL:0000393!9.69e-08!60;CL:0000211!9.69e-08!60;CL:0000220!2.14e-07!246;CL:0002321!5.29e-07!248 | |ontology_enrichment_celltype=CL:0000055!6.49e-15!180;CL:0000222!1.35e-14!119;CL:0000183!1.60e-10!59;CL:0000192!1.89e-10!42;CL:0000514!1.89e-10!42;CL:0000359!3.52e-10!32;CL:0000680!1.31e-09!57;CL:0000056!1.31e-09!57;CL:0000355!1.31e-09!57;CL:0000187!3.55e-09!54;CL:0000057!8.66e-09!75;CL:0000393!9.69e-08!60;CL:0000211!9.69e-08!60;CL:0000220!2.14e-07!246;CL:0002321!5.29e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.56e-10;32!CL:0000192;2.67e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.99e-12,121;CL:0000359,1.20e-10,32;CL:0000192,2.08e-09,43;CL:0000514,2.08e-09,43;CL:0000057,7.75e-09,76 | |||
|ontology_enrichment_development_v019=CL:0000514;2.67e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.20e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.10e-17!79;UBERON:0007798!1.10e-17!79;UBERON:0000477!8.77e-17!286;UBERON:0000055!3.99e-15!69;UBERON:0004111!4.69e-15!241;UBERON:0003914!8.57e-15!118;UBERON:0004872!3.51e-14!84;UBERON:0001009!7.65e-14!113;UBERON:0001981!4.38e-13!60;UBERON:0007500!4.38e-13!60;UBERON:0004537!4.38e-13!60;UBERON:0006965!4.38e-13!60;UBERON:0004535!5.29e-13!110;UBERON:0000025!1.48e-12!194;UBERON:0000483!3.93e-11!309;UBERON:0000475!4.35e-11!365;UBERON:0000119!7.78e-11!312;UBERON:0001637!2.98e-10!42;UBERON:0003509!2.98e-10!42;UBERON:0004572!2.98e-10!42;UBERON:0000481!6.97e-10!347;UBERON:0003103!1.15e-09!69;UBERON:0002385!3.94e-09!63;UBERON:0001015!3.94e-09!63;UBERON:0000383!3.94e-09!63;UBERON:0004573!4.48e-09!33;UBERON:0004571!4.48e-09!33;UBERON:0001134!6.70e-09!61;UBERON:0002036!6.70e-09!61;UBERON:0003082!6.70e-09!61;UBERON:0007100!1.55e-08!27;UBERON:0000468!1.89e-08!659;UBERON:0000948!1.26e-07!24;UBERON:0005498!1.26e-07!24;UBERON:0004140!1.26e-07!24;UBERON:0009881!1.26e-07!24;UBERON:0004141!1.26e-07!24;UBERON:0003084!1.26e-07!24;UBERON:0007005!1.26e-07!24;UBERON:0004139!1.26e-07!24;UBERON:0004291!1.26e-07!24;UBERON:0000467!1.39e-07!625;UBERON:0000480!2.06e-07!626;UBERON:0004290!4.06e-07!70;UBERON:0000486!4.85e-07!82;UBERON:0005256!7.07e-07!143 | |ontology_enrichment_uberon=UBERON:0002049!1.10e-17!79;UBERON:0007798!1.10e-17!79;UBERON:0000477!8.77e-17!286;UBERON:0000055!3.99e-15!69;UBERON:0004111!4.69e-15!241;UBERON:0003914!8.57e-15!118;UBERON:0004872!3.51e-14!84;UBERON:0001009!7.65e-14!113;UBERON:0001981!4.38e-13!60;UBERON:0007500!4.38e-13!60;UBERON:0004537!4.38e-13!60;UBERON:0006965!4.38e-13!60;UBERON:0004535!5.29e-13!110;UBERON:0000025!1.48e-12!194;UBERON:0000483!3.93e-11!309;UBERON:0000475!4.35e-11!365;UBERON:0000119!7.78e-11!312;UBERON:0001637!2.98e-10!42;UBERON:0003509!2.98e-10!42;UBERON:0004572!2.98e-10!42;UBERON:0000481!6.97e-10!347;UBERON:0003103!1.15e-09!69;UBERON:0002385!3.94e-09!63;UBERON:0001015!3.94e-09!63;UBERON:0000383!3.94e-09!63;UBERON:0004573!4.48e-09!33;UBERON:0004571!4.48e-09!33;UBERON:0001134!6.70e-09!61;UBERON:0002036!6.70e-09!61;UBERON:0003082!6.70e-09!61;UBERON:0007100!1.55e-08!27;UBERON:0000468!1.89e-08!659;UBERON:0000948!1.26e-07!24;UBERON:0005498!1.26e-07!24;UBERON:0004140!1.26e-07!24;UBERON:0009881!1.26e-07!24;UBERON:0004141!1.26e-07!24;UBERON:0003084!1.26e-07!24;UBERON:0007005!1.26e-07!24;UBERON:0004139!1.26e-07!24;UBERON:0004291!1.26e-07!24;UBERON:0000467!1.39e-07!625;UBERON:0000480!2.06e-07!626;UBERON:0004290!4.06e-07!70;UBERON:0000486!4.85e-07!82;UBERON:0005256!7.07e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.75e-09;33!UBERON:0004571;2.75e-09;33!UBERON:0001637;1.39e-08;42!UBERON:0003509;1.39e-08;42!UBERON:0004572;1.39e-08;42!UBERON:0002049;1.04e-07;75!UBERON:0007798;1.04e-07;75!UBERON:0000055;6.36e-07;65 | |||
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|phase1_expression=13.2625216867506,4.28201047781966,11.9811243481575,11.0080628188443,8.49226079411847,15.7020934338066,7.59899634504932,1.89515962028049,0.261185628199839,1.22866968250754,0,0.436882744260345,0.527533956456907,0,0.331397375727916,7.39557661096953,2.41077811209591,0.730310090387373,5.85519358548608,1.10808952269109,0.204000691244253,0.313454721478088,0.572471974262113,0.136874425072884,1.63205431473244,0,0,0,0,0,0.154816123316076,0,0.6024118375565,1.10926203050036,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.398927315243264,0,0,0.56738522469114,0.622822248995575,0.251248665256743,0,0,1.81619850790011,0,0,0.422510572623884,0,0,0,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2568239576754,0.670700859703636,0.895037932904712,10.843174571537,2.00535164254356,5.93870727739377,0.795285947051099,3.89307896242109,0.283604451492204,1.55210578223795,1.93236528524877,0.589405839739707,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0.596287222100115,0,2.08284300964557,1.13061588384802,1.25849830862972,0,0.417989933073621,5.42675194255591,3.5576626268671,1.67360306382335,4.02829317109147,7.60272105718513,5.36936526605973,1.83831540172934,0,0.357198913136319,0.22452937262617,0.450445921933289,1.53316637465883,0,1.09921046358244,0,0,0.872188104285069,36.7759244254536,7.97772223486853,1.45650098894541,14.0549944166919,2.83734705758686,6.72813120170769,13.8773694448616,10.3600370335207,0.933633106199299,1.61652806483626,1.63461903113459,7.26515652695671,10.37116664064,0,0,0.570471821544449,0.149448680551801,0,0,0,0.816616685019573,0.61417158655884,0.413303124703062,4.75201142912821,3.21447008062124,1.82032272387605,1.43723628363248,0.168336113954066,0,0.277064115484183,0,3.37136575378922,3.15499923703853,2.94923676216055,7.35497506324334,4.48470516518992,1.90738711043606,1.20036438433761,0.103052529238439,5.41045134095821,3.90845398296339,1.35021065793013,0.487185025805993,1.51460264546469,1.74894807420369,1.13152239773168,8.16522062788213,0.201504196455281,1.86516651541536,2.12586938479627,1.90922284413584,2.29443676311203,0,0,0,0,0,0,0,3.21620469096443,2.76269842704961,0.464367928031979,0.721879481669586,0.354920400119532,0.505754070234305,0.723033089650446,1.10293972732394,1.08939722046203,0.237270619111097,1.21348177344148,1.56977172100277,0,2.21446636387394,1.40241773803446,1.2347220339942,2.94017422771084,0,0.982827216677626,5.31710916013264,0,0.737930631258681,1.71567810298526,2.52425656439839,0,0.603173834469785,0.925884451585296,0.651616610620649,0,0,0.695582429850461,9.15787815039409,4.33099343283221,5.55582615091933,3.61482889245737,0,0,0,0,0,0,1.00789276919316,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0.952468414382536,0,0,1.71072446022705,1.13110241973656,1.50171528921959,2.00078502841405,0.448524337381443,0,0.22001485746285,10.3417372606222,0,3.381211010224,4.5209479819428,2.08014873822732,0,0,0,4.43231780340257,0.542621605391443,1.64648067356154,0.65147236858747,1.42156779497018,1.58390374586686,9.34462068884717,6.10073421020206,3.79897366491817,0,0,0,4.55287225434007,5.7430967917057,0,3.32997005335432,1.02738161275192,0.895304816199478,0,0.197030760201927,0.215627574859517,0,0.254094624222463,0,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0,0.12269149171914,2.50085260529839,0,35.1470755987064,27.1212062971686,25.2323864054295,27.4110911082949,0.902838299183157,6.82222512167955,0,1.32845119707087,0.553107505625109,0.347534457872331,4.69922777910577,0.686286847621712,0,0,0,0,1.66435439510497,0,10.1724201205699,5.06424511850606,3.08726103876381,13.8390281196157,24.0502407061351,16.0853921143608,7.42090332224955,0.308419387605311,2.30830242907065,0.657017248110473,0.519254429183621,0.929683027679674,0,1.00253235151642,0.460404944679482,1.26295892981067,0.182091168006717,0.131124414959424,1.35359883872224,1.61732207919271,1.56869953835371,0,2.74434235121477,1.13733384070897,3.06168669497728,7.98888889577916,9.25363516141736,3.25135725052623,3.51182841698397,1.52925763827023,1.66215201785745,1.79099803777743,0,0,0.256450125116389,1.31205858279882,0.325378394664303,0.824328093181778,0.54941678891006,0.082509499920588,0.574265537996172,0.650060246036521,0,0.290012154876366,0.308097234229289,0.614014698904518,0.275673144969061,0.751941714077915,0.290033387828457,0.170453254832202,0.979352392114111,2.31398881505369,0.576570202095319,1.14851441245126,0.50578890427775,2.32422774648643,24.8701753996206,1.3940745403212,2.15623506123262,4.7907542728532,0.869932992075073,7.04232032594896,5.29562080945368,1.116475108079,4.42931194606216,2.85945290885737,1.27948895655667,0.855877976067841,2.22742273548156,3.13979456079692,2.33834194858309,0.823611089208164,1.06031162111118,10.1091240786658,6.34041284692033,1.26377536871694,0.975267478179181,4.6305563029944,0,2.04749867111979,1.97967604735198,1.13008116620243,2.2054613741845,5.307511801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| ||
|short_description=p@chr4:57897407..57897469,- | |short_description=p@chr4:57897407..57897469,- | ||
}} | }} |
Latest revision as of 05:52, 30 July 2015
Short description: | p@chr4:57897407..57897469, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:57897407..57897469, - |
Coexpression cluster: | C772_Smooth_Fibroblast_Adipocyte_Preadipocyte_hepatic_Renal_Osteoblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.99e-12 | 121 |
vascular associated smooth muscle cell | 1.20e-10 | 32 |
smooth muscle cell | 2.08e-09 | 43 |
smooth muscle myoblast | 2.08e-09 | 43 |
fibroblast | 7.75e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
vasculature | 3.92e-18 | 78 |
vascular system | 3.92e-18 | 78 |
vessel | 4.84e-16 | 68 |
circulatory system | 9.84e-15 | 112 |
epithelial tube | 1.47e-14 | 117 |
cardiovascular system | 1.02e-13 | 109 |
epithelial tube open at both ends | 2.91e-13 | 59 |
blood vessel | 2.91e-13 | 59 |
blood vasculature | 2.91e-13 | 59 |
vascular cord | 2.91e-13 | 59 |
splanchnic layer of lateral plate mesoderm | 9.41e-13 | 83 |
artery | 8.69e-12 | 42 |
arterial blood vessel | 8.69e-12 | 42 |
arterial system | 8.69e-12 | 42 |
anatomical conduit | 1.80e-10 | 240 |
systemic artery | 2.35e-10 | 33 |
systemic arterial system | 2.35e-10 | 33 |
compound organ | 3.09e-09 | 68 |
tube | 1.35e-08 | 192 |
mesenchyme | 8.63e-08 | 160 |
entire embryonic mesenchyme | 8.63e-08 | 160 |
primary circulatory organ | 2.08e-07 | 27 |
epithelium | 7.73e-07 | 306 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.20e-07 | 14 |