FFCP PHASE1:Hg19::chr5:147582333..147582347,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=404203 | |EntrezGene=404203 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29486 | |HGNC=29486 | ||
|TSSclassifier=strong | |||
|UniProt=D6RGX9,E0X656,Q6UWN8 | |UniProt=D6RGX9,E0X656,Q6UWN8 | ||
|association_with_transcript=-9bp_to_ENST00000514389,NM_001195290,NM_205841_5end | |association_with_transcript=-9bp_to_ENST00000514389,NM_001195290,NM_205841_5end | ||
|cluster_id=chr5:147582333..147582347,+ | |||
|coexpression_cluster_id=C106 | |coexpression_cluster_id=C106 | ||
|description=CAGE_peak_2_at_SPINK6_5end | |description=CAGE_peak_2_at_SPINK6_5end | ||
|id=chr5:147582333..147582347,+ | |id=chr5:147582333..147582347,+ | ||
|ontology_enrichment_celltype=CL:0002159!1.34e-19!13;CL:0002621!3.26e-12!3;CL:0002077!1.25e-10!33;CL:0000066!4.74e-10!254;CL:0000575!9.24e-10!2;CL:0000317!2.33e-09!2;CL:1000448!2.33e-09!2;CL:0002308!2.33e-09!2;CL:0002140!2.33e-09!2;CL:0000362!1.28e-08!8;CL:0000622!4.56e-08!5;CL:0000221!8.08e-08!71;CL:0000154!8.74e-07!6 | |ontology_enrichment_celltype=CL:0002159!1.34e-19!13;CL:0002621!3.26e-12!3;CL:0002077!1.25e-10!33;CL:0000066!4.74e-10!254;CL:0000575!9.24e-10!2;CL:0000317!2.33e-09!2;CL:1000448!2.33e-09!2;CL:0002308!2.33e-09!2;CL:0002140!2.33e-09!2;CL:0000362!1.28e-08!8;CL:0000622!4.56e-08!5;CL:0000221!8.08e-08!71;CL:0000154!8.74e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000575;5.20e-21;2!CL:0002159;1.59e-17;14!CL:0000362;2.33e-10;9!CL:0000312;8.84e-09;5!CL:0002537;9.76e-09;5!CL:0000240;1.86e-07;6!CL:0000311;1.86e-07;6!CL:0000079;1.86e-07;6!CL:0000237;1.86e-07;6!CL:0002077;8.57e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,4.70e-21,2;CL:0002159,1.48e-17,14;CL:0000362,2.26e-10,9;CL:0000066,6.55e-09,253;CL:0000312,8.84e-09,5;CL:0002537,9.57e-09,5;CL:0000240,1.86e-07,6;CL:0000311,1.86e-07,6;CL:0000079,1.86e-07,6;CL:0000237,1.86e-07,6;CL:0000036,1.86e-07,6;CL:0000357,1.86e-07,6;CL:0000114,1.86e-07,6;CL:0002077,3.64e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.71e-27;29!CL:0000357;1.86e-07;6!CL:0000114;1.86e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.59e-10,106;DOID:0050687,6.56e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.47e-38!9;UBERON:0001557!3.11e-21!19;UBERON:0001949!3.26e-12!3;UBERON:0001004!1.08e-09!72;UBERON:0002419!2.33e-09!2;UBERON:0007771!2.33e-09!2;UBERON:0003297!2.33e-09!2;UBERON:0001821!2.33e-09!2;UBERON:0003487!2.33e-09!2;UBERON:0001820!2.33e-09!2;UBERON:0005089!2.33e-09!2;UBERON:0005088!2.33e-09!2;UBERON:0008947!8.58e-08!38;UBERON:0003258!8.58e-08!38;UBERON:0000065!1.32e-07!53;UBERON:0000072!1.44e-07!46;UBERON:0005631!5.21e-07!14;UBERON:0000158!5.21e-07!14 | |ontology_enrichment_uberon=UBERON:0001737!1.47e-38!9;UBERON:0001557!3.11e-21!19;UBERON:0001949!3.26e-12!3;UBERON:0001004!1.08e-09!72;UBERON:0002419!2.33e-09!2;UBERON:0007771!2.33e-09!2;UBERON:0003297!2.33e-09!2;UBERON:0001821!2.33e-09!2;UBERON:0003487!2.33e-09!2;UBERON:0001820!2.33e-09!2;UBERON:0005089!2.33e-09!2;UBERON:0005088!2.33e-09!2;UBERON:0008947!8.58e-08!38;UBERON:0003258!8.58e-08!38;UBERON:0000065!1.32e-07!53;UBERON:0000072!1.44e-07!46;UBERON:0005631!5.21e-07!14;UBERON:0000158!5.21e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.22e-90;9!UBERON:0001557;3.22e-90;9!UBERON:0000072;8.29e-20;37!UBERON:0000065;1.10e-16;44!UBERON:0000964;5.44e-11;4!UBERON:0010409;5.44e-11;4!UBERON:0001004;7.98e-09;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.57e-90,9;UBERON:0001557,3.34e-42,19;UBERON:0008947,1.50e-20,38;UBERON:0003258,1.50e-20,38;UBERON:0000072,2.16e-16,47;UBERON:0000065,4.11e-14,54;UBERON:0000964,5.18e-11,4;UBERON:0010409,5.18e-11,4;UBERON:0004348,5.18e-11,4;UBERON:0005427,5.18e-11,4;UBERON:0001004,5.71e-10,74;UBERON:0001048,1.23e-08,160;UBERON:0001041,2.70e-08,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.46442932438813,5.93255108455087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,8.99131680302814,8.59781919398319,9.15841913557232,9.92645754591546,5.01122721412534,9.01628352622167,11.9999864262546,12.1657308377715,11.5424147083917,0,0,0,0,0,0,0,0,0,0,3.40225884766739,0,2.21163739305588,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.567100388969546,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87132768998086,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36942951335251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,1.43246690842614,0,3.37876772309155,0,0,0,0,0.63337622438398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,2.78847488557207,0.384751292518985,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,1.36885967914362,0,0,0,0,0,0,0,0,4.47818665771911,0.67952103036807,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0.85359238546975,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.46442932438813,5.93255108455087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,8.99131680302814,8.59781919398319,9.15841913557232,9.92645754591546,5.01122721412534,9.01628352622167,11.9999864262546,12.1657308377715,11.5424147083917,0,0,0,0,0,0,0,0,0,0,3.40225884766739,0,2.21163739305588,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.567100388969546,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87132768998086,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36942951335251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,1.43246690842614,0,3.37876772309155,0,0,0,0,0.63337622438398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,2.78847488557207,0.384751292518985,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,1.36885967914362,0,0,0,0,0,0,0,0,4.47818665771911,0.67952103036807,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0.85359238546975,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@SPINK6 | |short_description=p2@SPINK6 | ||
}} | }} |
Latest revision as of 23:37, 15 September 2015
Short description: | p2@SPINK6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SPINK6_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | -9bp_to_ENST00000514389, NM_001195290, NM_205841_5end |
EntrezGene: | SPINK6 |
HGNC: | 29486 |
UniProt: | D6RGX9E0X656Q6UWN8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 4.70e-21 | 2 |
general ecto-epithelial cell | 1.48e-17 | 14 |
epidermal cell | 2.26e-10 | 9 |
epithelial cell | 6.55e-09 | 253 |
keratinocyte | 8.84e-09 | 5 |
amnion mesenchymal stem cell | 9.57e-09 | 5 |
stratified squamous epithelial cell | 1.86e-07 | 6 |
keratin accumulating cell | 1.86e-07 | 6 |
stratified epithelial cell | 1.86e-07 | 6 |
keratinizing barrier epithelial cell | 1.86e-07 | 6 |
epithelial fate stem cell | 1.86e-07 | 6 |
stratified epithelial stem cell | 1.86e-07 | 6 |
surface ectodermal cell | 1.86e-07 | 6 |
ecto-epithelial cell | 3.64e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.57e-90 | 9 |
upper respiratory tract | 3.34e-42 | 19 |
respiratory primordium | 1.50e-20 | 38 |
endoderm of foregut | 1.50e-20 | 38 |
segment of respiratory tract | 2.16e-16 | 47 |
respiratory tract | 4.11e-14 | 54 |
cornea | 5.18e-11 | 4 |
eye surface | 5.18e-11 | 4 |
optic eminence | 5.18e-11 | 4 |
corneal primordium | 5.18e-11 | 4 |
respiratory system | 5.71e-10 | 74 |
primordium | 1.23e-08 | 160 |
foregut | 2.70e-08 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.59e-10 | 106 |
cell type cancer | 6.56e-07 | 143 |