FFCP PHASE1:Hg19::chr5:170239966..170239982,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:170239966..170239982,+ | |||
|coexpression_cluster_id=C393 | |coexpression_cluster_id=C393 | ||
|description=CAGE_peak_at_chr5:170239966..170239982,+ | |description=CAGE_peak_at_chr5:170239966..170239982,+ | ||
|id=chr5:170239966..170239982,+ | |id=chr5:170239966..170239982,+ | ||
|ontology_enrichment_celltype=CL:0000349!4.77e-19!3;CL:0002577!4.77e-19!3;CL:0002536!3.09e-13!2;CL:0002537!1.71e-11!5 | |ontology_enrichment_celltype=CL:0000349!4.77e-19!3;CL:0002577!4.77e-19!3;CL:0002536!3.09e-13!2;CL:0002537!1.71e-11!5 | ||
|ontology_enrichment_celltype_v019=CL:0002577;1.11e-84;3!CL:0002536;7.34e-57;2!CL:0000349;1.76e-53;19!CL:0002537;4.79e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,1.28e-84,3;CL:0002536,8.47e-57,2;CL:0000349,1.93e-53,19;CL:0002537,4.79e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4468;2.37e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,2.05e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.77e-33!14;UBERON:0000158!2.77e-33!14;UBERON:0000305!1.44e-21!7;UBERON:0004871!7.54e-19!8;UBERON:0000478!8.85e-19!24;UBERON:0001987!2.03e-14!4;UBERON:0004340!2.03e-14!4;UBERON:0003124!7.81e-14!7;UBERON:0006562!1.24e-12!11;UBERON:0003975!3.31e-09!22;UBERON:0001042!4.16e-09!10;UBERON:0009145!4.16e-09!10;UBERON:0002110!1.15e-08!3;UBERON:0006242!1.15e-08!3;UBERON:0001723!1.24e-08!3;UBERON:0001033!1.24e-08!3;UBERON:0010056!1.24e-08!3;UBERON:0004923!1.29e-08!57;UBERON:0004175!4.97e-08!25;UBERON:0000996!2.37e-07!1;UBERON:0007029!2.67e-07!1;UBERON:0002171!3.20e-07!1;UBERON:0006518!3.20e-07!1;UBERON:0008949!3.20e-07!1;UBERON:0000101!3.20e-07!1;UBERON:0002167!3.20e-07!1;UBERON:0000995!7.16e-07!21;UBERON:0000077!7.55e-07!130 | |ontology_enrichment_uberon=UBERON:0005631!2.77e-33!14;UBERON:0000158!2.77e-33!14;UBERON:0000305!1.44e-21!7;UBERON:0004871!7.54e-19!8;UBERON:0000478!8.85e-19!24;UBERON:0001987!2.03e-14!4;UBERON:0004340!2.03e-14!4;UBERON:0003124!7.81e-14!7;UBERON:0006562!1.24e-12!11;UBERON:0003975!3.31e-09!22;UBERON:0001042!4.16e-09!10;UBERON:0009145!4.16e-09!10;UBERON:0002110!1.15e-08!3;UBERON:0006242!1.15e-08!3;UBERON:0001723!1.24e-08!3;UBERON:0001033!1.24e-08!3;UBERON:0010056!1.24e-08!3;UBERON:0004923!1.29e-08!57;UBERON:0004175!4.97e-08!25;UBERON:0000996!2.37e-07!1;UBERON:0007029!2.67e-07!1;UBERON:0002171!3.20e-07!1;UBERON:0006518!3.20e-07!1;UBERON:0008949!3.20e-07!1;UBERON:0000101!3.20e-07!1;UBERON:0002167!3.20e-07!1;UBERON:0000995!7.16e-07!21;UBERON:0000077!7.55e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;8.53e-64;4!UBERON:0000478;1.86e-42;24!UBERON:0000305;5.92e-37;7!UBERON:0005631;3.76e-26;10!UBERON:0000158;3.76e-26;10!UBERON:0000077;3.64e-10;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.65e-72,14;UBERON:0000158,2.65e-72,14;UBERON:0001987,9.51e-64,4;UBERON:0004340,9.51e-64,4;UBERON:0000478,2.00e-42,24;UBERON:0000305,6.30e-37,7;UBERON:0003124,7.12e-37,7;UBERON:0004871,1.97e-32,8;UBERON:0004923,1.10e-15,66;UBERON:0000995,7.43e-13,21;UBERON:0005795,2.64e-12,22;UBERON:0003975,2.64e-12,22;UBERON:0004175,6.47e-11,25;UBERON:0000077,1.66e-09,29;UBERON:0003134,1.36e-07,37;UBERON:0000474,1.36e-07,37;UBERON:0003100,6.54e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.52908960491121,2.63766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,9.98612637062982,2.72151263996712,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,18.7087748924562,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,1.79556088975062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0.250707539292375,0,0,0,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0.217716747896961,0.342233301085281,0.0673520530145875,0.358611026963382,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.52908960491121,2.63766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,9.98612637062982,2.72151263996712,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,18.7087748924562,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,1.79556088975062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0.250707539292375,0,0,0,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0.217716747896961,0.342233301085281,0.0673520530145875,0.358611026963382,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | ||
|short_description=p@chr5:170239966..170239982,+ | |short_description=p@chr5:170239966..170239982,+ | ||
}} | }} |
Latest revision as of 12:59, 30 July 2015
Short description: | p@chr5:170239966..170239982, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:170239966..170239982, + |
Coexpression cluster: | C393_amniotic_Placental_Amniotic_clear_Basophils_pharyngeal_tonsil |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 1.28e-84 | 3 |
amniotic epithelial cell | 8.47e-57 | 2 |
extraembryonic cell | 1.93e-53 | 19 |
amnion mesenchymal stem cell | 4.79e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.65e-72 | 14 |
membranous layer | 2.65e-72 | 14 |
placenta | 9.51e-64 | 4 |
allantois | 9.51e-64 | 4 |
extraembryonic structure | 2.00e-42 | 24 |
amnion | 6.30e-37 | 7 |
chorion | 7.12e-37 | 7 |
somatic layer of lateral plate mesoderm | 1.97e-32 | 8 |
organ component layer | 1.10e-15 | 66 |
uterus | 7.43e-13 | 21 |
embryonic uterus | 2.64e-12 | 22 |
internal female genitalia | 2.64e-12 | 22 |
internal genitalia | 6.47e-11 | 25 |
mixed endoderm/mesoderm-derived structure | 1.66e-09 | 29 |
female reproductive organ | 1.36e-07 | 37 |
female reproductive system | 1.36e-07 | 37 |
female organism | 6.54e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 2.05e-15 | 2 |