FFCP PHASE1:Hg19::chr8:110535068..110535088,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93035 | |EntrezGene=93035 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20313 | |HGNC=20313 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000534623_5end | |association_with_transcript=16bp_to_ENST00000534623_5end | ||
|cluster_id=chr8:110535068..110535088,+ | |||
|coexpression_cluster_id=C47 | |coexpression_cluster_id=C47 | ||
|description=CAGE_peak_3_at_PKHD1L1_5end | |description=CAGE_peak_3_at_PKHD1L1_5end | ||
|id=chr8:110535068..110535088,+ | |id=chr8:110535068..110535088,+ | ||
|ontology_enrichment_celltype=CL:0000945!5.39e-67!24;CL:0000826!5.39e-67!24;CL:0000236!5.78e-41!14;CL:0000542!1.78e-32!53;CL:0000051!1.78e-32!53;CL:0000838!3.16e-30!52;CL:0002087!7.08e-12!119;CL:0000738!4.32e-11!140;CL:0002031!4.57e-09!124;CL:0000037!1.30e-08!172;CL:0000566!1.30e-08!172;CL:0002032!1.98e-08!165;CL:0000837!1.98e-08!165;CL:0000785!4.16e-08!2;CL:0000955!4.16e-08!2;CL:0000818!4.16e-08!2;CL:0000954!4.16e-08!2;CL:0000816!4.16e-08!2;CL:0000988!8.79e-08!182 | |ontology_enrichment_celltype=CL:0000945!5.39e-67!24;CL:0000826!5.39e-67!24;CL:0000236!5.78e-41!14;CL:0000542!1.78e-32!53;CL:0000051!1.78e-32!53;CL:0000838!3.16e-30!52;CL:0002087!7.08e-12!119;CL:0000738!4.32e-11!140;CL:0002031!4.57e-09!124;CL:0000037!1.30e-08!172;CL:0000566!1.30e-08!172;CL:0002032!1.98e-08!165;CL:0000837!1.98e-08!165;CL:0000785!4.16e-08!2;CL:0000955!4.16e-08!2;CL:0000818!4.16e-08!2;CL:0000954!4.16e-08!2;CL:0000816!4.16e-08!2;CL:0000988!8.79e-08!182 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.29e-120;24!CL:0000236;3.23e-67;13!CL:0000542;3.73e-35;53!CL:0002087;2.06e-08;104!CL:0000946;1.42e-07;1!CL:0000786;1.42e-07;1!CL:0000785;1.95e-07;1!CL:0000819;1.95e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.12e-120,24;CL:0000826,1.12e-120,24;CL:0000236,4.22e-73,14;CL:0000542,2.12e-57,53;CL:0000051,2.12e-57,53;CL:0000838,2.52e-53,52;CL:0002087,1.10e-23,115;CL:0002031,2.47e-20,120;CL:0000738,2.49e-19,136;CL:0002032,1.29e-15,161;CL:0000837,1.29e-15,161;CL:0000037,8.97e-15,168;CL:0000988,8.70e-14,177;CL:0000785,2.49e-13,2;CL:0000955,2.49e-13,2;CL:0000818,2.49e-13,2;CL:0000954,2.49e-13,2;CL:0000816,2.49e-13,2;CL:0000817,3.52e-09,3;CL:0000946,1.42e-07,1;CL:0000786,1.42e-07,1;CL:0000980,1.42e-07,1;CL:0000819,1.95e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;3.73e-35;53!CL:0000954;2.49e-13;2!UBERON:0001045;2.35e-07;1!UBERON:0008801;3.96e-07;1 | |||
|ontology_enrichment_disease=DOID:0060058!5.64e-12!10 | |ontology_enrichment_disease=DOID:0060058!5.64e-12!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;4.25e-21;10!DOID:12603;1.18e-07;1!DOID:630;1.61e-07;1!DOID:0050177;1.61e-07;1!DOID:0050427;1.61e-07;1!DOID:0060073;1.95e-07;1!DOID:8675;1.95e-07;1!DOID:2355;3.96e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.56e-21,10;DOID:12603,1.10e-07,1;DOID:630,1.72e-07,1;DOID:0050177,1.72e-07,1;DOID:0050427,1.72e-07,1;DOID:0060073,1.95e-07,1;DOID:8675,1.95e-07,1;DOID:2355,3.62e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.32e-11!7;UBERON:0002106!8.94e-11!3;UBERON:0004854!8.94e-11!3;UBERON:0009034!8.94e-11!3;UBERON:0002095!8.94e-11!3;UBERON:0004782!8.94e-11!3;UBERON:0003281!8.94e-11!3;UBERON:0009664!8.94e-11!3;UBERON:0002296!8.94e-11!3;UBERON:0005602!8.94e-11!3;UBERON:0001179!8.94e-11!3;UBERON:0006293!8.94e-11!3;UBERON:0007023!6.19e-09!115;UBERON:0003408!7.07e-08!10;UBERON:0001829!1.36e-07!2 | |ontology_enrichment_uberon=UBERON:0004177!1.32e-11!7;UBERON:0002106!8.94e-11!3;UBERON:0004854!8.94e-11!3;UBERON:0009034!8.94e-11!3;UBERON:0002095!8.94e-11!3;UBERON:0004782!8.94e-11!3;UBERON:0003281!8.94e-11!3;UBERON:0009664!8.94e-11!3;UBERON:0002296!8.94e-11!3;UBERON:0005602!8.94e-11!3;UBERON:0001179!8.94e-11!3;UBERON:0006293!8.94e-11!3;UBERON:0007023!6.19e-09!115;UBERON:0003408!7.07e-08!10;UBERON:0001829!1.36e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;7.75e-09;3!UBERON:0001154;2.35e-07;1!UBERON:0001153;2.35e-07;1!UBERON:0009854;2.35e-07;1!UBERON:0002372;3.96e-07;1!UBERON:0000029;3.96e-07;1!UBERON:0001831;3.96e-07;1!UBERON:0001301;3.96e-07;1!UBERON:0001961;3.96e-07;1!UBERON:0001744;3.96e-07;1!UBERON:0001042;3.96e-07;1!UBERON:0001567;3.96e-07;1!UBERON:0001735;3.96e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,6.74e-09,3;UBERON:0004854,6.74e-09,3;UBERON:0009034,6.74e-09,3;UBERON:0002095,6.74e-09,3;UBERON:0004782,6.74e-09,3;UBERON:0003281,6.74e-09,3;UBERON:0009664,6.74e-09,3;UBERON:0002296,6.74e-09,3;UBERON:0005602,6.74e-09,3;UBERON:0001179,6.74e-09,3;UBERON:0006293,6.74e-09,3;UBERON:0001154,2.66e-07,1;UBERON:0001153,2.66e-07,1;UBERON:0001045,2.66e-07,1;UBERON:0001831,3.40e-07,1;UBERON:0001567,3.40e-07,1;UBERON:0008801,3.40e-07,1;UBERON:0000029,4.09e-07,1;UBERON:0002372,4.34e-07,1;UBERON:0001961,4.34e-07,1;UBERON:0001744,4.34e-07,1;UBERON:0001735,4.34e-07,1;UBERON:0001301,4.90e-07,1 | |||
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| ||
|short_description=p3@PKHD1L1 | |short_description=p3@PKHD1L1 | ||
}} | }} |
Latest revision as of 03:34, 25 September 2015
Short description: | p3@PKHD1L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PKHD1L1_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 16bp_to_ENST00000534623_5end |
EntrezGene: | PKHD1L1 |
HGNC: | 20313 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.12e-120 | 24 |
pro-B cell | 1.12e-120 | 24 |
B cell | 4.22e-73 | 14 |
lymphocyte | 2.12e-57 | 53 |
common lymphoid progenitor | 2.12e-57 | 53 |
lymphoid lineage restricted progenitor cell | 2.52e-53 | 52 |
nongranular leukocyte | 1.10e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 2.47e-20 | 120 |
leukocyte | 2.49e-19 | 136 |
hematopoietic oligopotent progenitor cell | 1.29e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.29e-15 | 161 |
hematopoietic stem cell | 8.97e-15 | 168 |
hematopoietic cell | 8.70e-14 | 177 |
mature B cell | 2.49e-13 | 2 |
pre-B-II cell | 2.49e-13 | 2 |
transitional stage B cell | 2.49e-13 | 2 |
small pre-B-II cell | 2.49e-13 | 2 |
immature B cell | 2.49e-13 | 2 |
precursor B cell | 3.52e-09 | 3 |
antibody secreting cell | 1.42e-07 | 1 |
plasma cell | 1.42e-07 | 1 |
plasmablast | 1.42e-07 | 1 |
B-1 B cell | 1.95e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 6.74e-09 | 3 |
gastrointestinal system mesentery | 6.74e-09 | 3 |
stomach region | 6.74e-09 | 3 |
mesentery | 6.74e-09 | 3 |
gastrointestinal system serosa | 6.74e-09 | 3 |
mesentery of stomach | 6.74e-09 | 3 |
gut mesentery | 6.74e-09 | 3 |
dorsal mesentery | 6.74e-09 | 3 |
dorsal mesogastrium | 6.74e-09 | 3 |
peritoneal cavity | 6.74e-09 | 3 |
spleen primordium | 6.74e-09 | 3 |
vermiform appendix | 2.66e-07 | 1 |
caecum | 2.66e-07 | 1 |
midgut | 2.66e-07 | 1 |
parotid gland | 3.40e-07 | 1 |
cheek | 3.40e-07 | 1 |
parotid gland primordium | 3.40e-07 | 1 |
lymph node | 4.09e-07 | 1 |
tonsil | 4.34e-07 | 1 |
mucosa-associated lymphoid tissue | 4.34e-07 | 1 |
lymphoid tissue | 4.34e-07 | 1 |
tonsillar ring | 4.34e-07 | 1 |
epididymis | 4.90e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.56e-21 | 10 |
acute leukemia | 1.10e-07 | 1 |
genetic disease | 1.72e-07 | 1 |
monogenic disease | 1.72e-07 | 1 |
xeroderma pigmentosum | 1.72e-07 | 1 |
lymphatic system cancer | 1.95e-07 | 1 |
lymphosarcoma | 1.95e-07 | 1 |
anemia | 3.62e-07 | 1 |