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{{Loading|loadingimage=sprites.gif}}<html><script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script language="javascript" type="text/javascript" src="/5/sstar/rb_js/flot/jquery.flot.js"></script><script language="javascript" type="text/javascript" src="/5/sstar/rb_js/flot/jquery.flot.axislabels.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/custom/convert.js"></script></html>
<table>
<table>
<tr><th scope="row" align="right" valign="top"> [[Property:Symbol|Symbol]]:</th><td>[[Symbol::{{{Symbol}}}]]</td></tr>
<tr><th scope="row" align="right" valign="top">[[Property:Symbol|Symbol]]:</th><td>{{#if:{{{Symbol}}}|[[Symbol::{{{Symbol}}}]]|NA}}</td></tr>
<tr><th scope="row" align="right" valign="top"> [[Property:Description|Description]]:</th><td>[[description::{{{description}}}]]</td></tr>
<tr><th scope="row" align="right" valign="top">[[Property:Description|Description]]:</th><td>{{#if:{{{description}}}|[[description::{{{description}}}]]|NA}}</td></tr>
<tr><th scope="row" align="right" valign="top">[[Property:Synonyms|Synonyms]]:</th><td>{{#show:{{FULLPAGENAME}}|?Synonyms}}</td></tr>
<tr><th scope="row" align="right" valign="top">[[Property:Synonyms|Synonyms]]:</th><td>{{#switch:{{{Synonyms}}}|- = NA| |#default = {{#show:{{FULLPAGENAME}}|?Synonyms}} }}</td></tr>
<tr><th scope="row" align="right" valign="top">[[Property:tax_id|Tax ID]]:</th><td>[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[[tax_id::{{{tax_id}}}]]&mode=Info {{{tax_id}}}]</td></tr>
<tr><th scope="row" align="right" valign="top">Species:</th><td>{{#set:tax_id={{{tax_id}}}}}{{#switch:{{{tax_id}}}|9606=Human (Homo sapiens)|10090=Mouse (Mus musculus)|NA}}</td></tr>
<tr><th scope="row" align="right" valign="top">External refs:</th><td>[http://www.ncbi.nlm.nih.gov/gene/{{{GeneID}}} EntrezGene:{{{GeneID}}}] {{#show:{{FULLPAGENAME}}|?dbXrefs}}</td></tr>
<!--
<tr><th scope="row" align="right" valign="top">Associated motifs:</th><td>
<tr><th scope="row" align="right" valign="top">[[Property:tax_id|Tax ID]]:</th><td>{{#if:{{{tax_id}}}|[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[[tax_id::{{{tax_id}}}]]&mode=Info {{{tax_id}}}]|NA}}</td></tr>
{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::{{{GeneID}}}]]
--><tr><th scope="row" align="right" valign="top">Xrefs:</th><td>{{#if:{{{GeneID}}}|{{GeneExternalRefs|{{{tax_id}}}|{{{chromosome}}}|{{{GeneID}}}|{{{Symbol}}}|{{{Synonyms}}}|{{{dbXrefs}}}}}|NA}}</td></tr>
|?name=
<tr><th scope="row" align="right" valign="top">Associated motifs:</th><td>{{#ifeq:{{#expr:{{#ask:[[Category:Motif]][[Name::~{{{Symbol}}}]]|?#|format=count}}+{{#ask:[[Category:NonRedundantMotifCluster]][[EntrezGene::~{{{GeneID}}}]]|?#|format=count}} }} | 0 | NA | {{#if:{{#ask:[[Category:Motif]][[Name::~{{{Symbol}}}]]}}| {{#ask:[[Category:Motif]][[Name::~{{{Symbol}}}]]|template=Jasparlogo_genepage|link=none}}|}}
|format=template
<span>{{#arraymap:{{{GeneID}}}|,|$|
|template=SwissregulonResult_withSeqLogo
{{NonRedundantMotifRender|$}}
|sep=<br>
}}</span>}} 
}}
</td></tr>
<tr><th scope="row" align="right" valign="top"> TSS regions:</th><td>
{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]
|?#
|?Short description
|format=ul
|headers=hide
|propsep=
|recordsep=
|link=subject
|titles=hide
|hidegaps=none
|sep=,  
|manysep=;
|headersep=
|offset=
}}  
</td></tr>
</td></tr>
<tr><th scope="row" align="right" valign="top">Transcripton Factor?: </th><td>{{#switch:{{{tf?}}}|yes=[[tf?::Yes]]|[[tf?::No]]}}</td></tr>
</table>
</table>


{{#switch:{{{Symbol}}}
{{Fontsize|3|TSS regions }}
|``{{{Symbol}}}``=
----
|=
{{#ask:[[FFCP PHASE2:+]][[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|?Short_description|format=table|class=ffcp_list stripe cell-border order-column compact|headers=hide|limit=20000|searchlabel=　... further results}}
|Click image to go to Genome browser
<br>
<html>
<script language="javascript" type="text/javascript">
$(document).ready(function() {
// TSS regions list
$('.ffcp_list').DataTable({
        dom: 'Blfrtip',
        lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]],
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
        columns: [{title:"TSS peak ID"},{title:"Short_description"}]
});
 
// hide-show animation for ucsc genome browser view
$("#ucsc_snap_view").hover(function(){
    $(this).stop(true, false).animate({ height: "900px"});
}, function() {
    $(this).stop(true, false).animate({ height: "30px" });
});
});
</script>
</html><br>
{{Fontsize|3|View on UCSC genome browser }}
----
<div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa;  overflow:auto;">
Mouse over to see Genome browser image, Click image to go to Genome browser
{{#ucsc_gb_link:{{#replace:{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]][[FFCP PHASE1:+]]|link=none|headers=hide|limit=1|searchlabel=}}|FFCP PHASE1:|}}}}
</div><br>
{{Fontsize|3|TSS expression}}
----
<html>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
<style type="text/css" title="currentStyle">
@import "/5/sstar/rb_js/html5button/datatables.css";
</style>
 
</html>
 
<html>
<html>
<div style="width:850px; overflow:auto; resize:both;">
<style type="text/css"> 
<a href="https://fantom5-collaboration.gsc.riken.jp/ucsc/cgi-bin/hgTracks?org=human&db=hg19&singleSearch=knownCanonical&position={{{Symbol}}}">
.rotate90 {
<img src="https://fantom5-collaboration.gsc.riken.jp/ucsc/cgi-bin/hgRenderTracks?org=human&db=hg19&singleSearch=knownCanonical&position={{{Symbol}}}">
  -webkit-transform: rotate(-90deg);
</a>
  -moz-transform: rotate(-90deg);
</div>
-webkit-transform-origin: 6px 18px;
-moz-transform-origin: 6px 18px;
width:1px;
}
.highlight { background-color: yellow }
</style>
<script type="text/javascript">
$(document).ready(function() {
    var orderArr;
    if($('#gene_exptable')[0].rows[1].cells.length>1){
        orderArr = [[1,'desc']];
    } else {
        orderArr = [[0,'asc']];
    }
    var oTable =  $('#gene_exptable').DataTable({
                dom: 'Bfrti',
scrollY: "300px",
scrollCollapse: true,
order: orderArr,
                paging: false,
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
columnDefs: [{ orderSequence: [ "asc", "desc" ], type: "html", targets: [ 0 ] }, { orderSequence: [ "desc", "asc" ], targets: [ "_all" ] } ]
});
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
 
var data = [];
var plotdata = [];
var slist = [];
// chart checkbox
for (var i2=1; i2<$('#gene_exptable thead th').length; i2++){
key2 = i2-1;
        $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 +
                              '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">'
                                + $('#gene_exptable thead th:nth-child('+(i2+1)+')').text() + '</label><br/>');
}
$(oTable.settings().column(i2).title).text()
function collectdata(){
data = [];
// for (i2=1, len2=oTable.settings().columns.length; i2<len2; i2++){
for (i2=1, len2=$('#gene_exptable thead th').length; i2<len2; i2++){
 
var plots = [];
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
    plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]);
}
data.push({"label": $('#gene_exptable thead th:nth-child('+(i2+1)+')').text(), "data": plots});
}
slist = [];
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
    slist.push($("#gene_exptable tr")[i1].cells[0].innerHTML);
}
}
 
 
function drawchart(){
 
plotdata = [];
 
$("#gene_exptable_chart_chkbox").find("input:checked").each(function () {
var key = $(this).attr("name");
plotdata.push(data[$(this).attr("name")]);
});
 
var plot1 = $.plot($("#gene_exptable_chart"), plotdata, {
                yaxis: { axisLabel: 'TPM' },
lines: { show: false },
points: { show: true },
                grid: { hoverable: true, clickable: true },
xaxis: { tickDecimals: 0, show: false },
                legend: { show: false }
});
 
//test
var data_series = plot1.getData();
 
$("#gene_exptable_chart_chkbox label").css("background-color", "white");
$.each(data_series , function(){
$("#gene_exptable_chart_chkbox label:contains(" + this.label + ")").css("background-color", this.color);
});
 
 
 
}
 
collectdata();
if($('#gene_exptable')[0].rows[1].cells.length>1){
    drawchart();
}
 
// re-draw chart event
$(window).resize(function() { drawchart(); });
$("th").click(function() {collectdata(); drawchart(); } );
$("#gene_exptable_paginate").click(function() {collectdata(); drawchart(); } );
$('#gene_exptable').bind('filter', function() {
setTimeout(function(){
collectdata(); drawchart();}, 1000);
} );
$('#gene_exptable_length').change(function() {collectdata(); drawchart(); } );
$("#gene_exptable_chart_chkbox").find("input").click(function() { drawchart(); });
 
// tooltip function start
    function showTooltip(x, y, contents) {
        $('<div id="tooltip">' + contents + '</div>').css( {
            position: 'absolute',
            display: 'none',
            top: y + 5,
            left: x + 5,
            border: '1px solid #aaa',
            padding: '2px',
            'background-color': '#fff',
            opacity: 0.80
        }).appendTo("body").fadeIn(200);
    }
 
    var previousPoint = null;
    $("#gene_exptable_chart").bind("plothover", function (event, pos, item) {
        $("#x").text(pos.x.toFixed(2));
        $("#y").text(pos.y.toFixed(2));
            if (item) {
                if (previousPoint!=item.dataIndex) {
                    previousPoint = item.dataIndex;
                   
                    $("#tooltip").remove();
                    x = item.datapoint[0].toFixed(0),
                    y = item.datapoint[1].toFixed(2);
 
                    showTooltip(item.pageX, item.pageY,
                              "Sample: "+slist[item.dataIndex]+"<br>TSS: "+ item.series.label +"  TPM: "+y);
                }
            }
            else {
                $("#tooltip").remove();
                previousPoint = null;           
            }
    });
// tooltip function end
 
// clicking point function
    $("#gene_exptable_chart").bind("plotclick", function (event, pos, item) {
if (item){
var vdata = Math.round($('#gene_exptable').height())/item.series.data.length*item.dataIndex;
$('#gene_exptable_wrapper .dataTables_scrollBody').animate({ scrollTop: vdata-150 }, 'slow');
$("#gene_exptable_wrapper .dataTables_scrollBody tbody td").removeClass('highlight');
$('#gene_exptable_wrapper .dataTables_scrollBody tbody tr:eq(' + item.dataIndex+ ') td').addClass('highlight');
}
    });
// clicking point function end
 
 
} );
</script>
<span id="export_tool"></span><br><br>
</html>
</html>
}}


<includeonly>{{#gene_exptable:{{#switch:{{{tax_id}}}|9606=Hg19|10090=Mm9}}
|{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p1@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p2@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p2@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p3@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p3@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p4@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p4@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p5@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p5@{{{Symbol}}},|searchlabel=}}
}}</includeonly>
<br><br>
<div id="gene_exptable_chart" style="float:left;width:600px;height:300px;"></div>
<html><br><br></html>
<div id="gene_exptable_chart_chkbox" style="float:left;"></div>
<div style="clear:both;"></div>
*Click each plot point to find sample in table
<html><style type="text/css"> 
table.details td { width:35%; background-color: #EAEBFF;}
table.details th { width:15%; background-color: #5A5FB5; color: white;}
</style></html>


== TSS expression ==
{{Fontsize|3|ENCODE TF ChIP-seq peak enrichment analysis }}{{#info:Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki>  0.05)  after Benjamini-Hochberg correction were retained.  <br>
<!-- expression table for human, from here -->
<br><br>link to source dataset.<br>[//fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters data]
{{#ifexpr: {{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]][[Species::Human (Homo sapiens)]]|format=count}} > 0 |
}}
<table class="wikitable mw-collapsible">
----
<tr><th scope="col">Expression table (TPM)</th></tr>
{{#ifexpr: {{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|format=count}} > 0 |
<tr><td>
(#promoters = Number of promoters in the coexpression cluster that have ChIP signal of the TF)
<div style="height:300px; overflow:auto; resize:both;">
<html>
<table class="wikitable sortable">
<script type="text/javascript">
<tr>
$(document).ready(function() {
<th scope="col" width="40">sample</th>
    var oTable2 =  $('#tf_chipseq_enrich').DataTable({
<th scope="col">
        dom: 'Blfrtip',
{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]][[Species::Human (Homo sapiens)]]|?id|?short_description|limit=100|format=template|template=Entrezgene_cpphase1_exptable_header_hg19|sep=</th><th scope="col">}}
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
</th>
scrollY: "300px",
</tr>
scrollCollapse: true,
{{#exptable_hg19:
        pageLength: 10,
{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]][[Species::Human (Homo sapiens)]]
lengthMenu: [[10, 50, -1], [10, 50, "All"]],
|?Phase1 expression
order: [[4,'asc']],
|limit=100
columnDefs: [{type: "numeric", targets: [2,3,4],
|format=list
        render: function ( data, type, row, meta ) {
|headers=hide
                  var num =data;             
|sep=;;
                  return exp_converter(num,2,"e") ;
|template=Ask1stprop
} }]
});
});
</script>
</html>{{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|?Tf_chipseq_enrich_values|intro=<div style="width:100%; float:left;"><table id="tf_chipseq_enrich" class="stripe cell-border order-column compact"><html><thead></html><tr><th>Coexpression cluster</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table></div>|link=none|format=template|template=Tf_chipseq_enrichlist_in_entregene|limit=5000|searchlabel=}}
|No analysis results for this cluster
}}
}}
<html><br><br></html>
{{Fontsize|3|Details}}{{#info:<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>[ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz  human] <br>
[ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Mus_musculus.gene_info.gz  mouse]
}}
}}
</table></div>
----
</td></tr>
<table class="details">
</table>
<tr><th scope="row" align="right">GeneID:</th><td>{{#if:{{{GeneID}}}|[[GeneID::{{{GeneID}}}]]|NA}}</td></tr>
}}
<tr><th scope="row" align="right">LocusTag:</th><td>{{#if:{{{LocusTag}}}|[[LocusTag::{{{LocusTag}}}]]|NA}}</td></tr>
<!-- expression table for mouse, from here -->
<tr><th scope="row" align="right">chromosome:</th><td>{{#if:{{{chromosome}}}|[[chromosome::{{{chromosome}}}]]|NA}}</td></tr>
{{#ifexpr: {{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]][[Species::Mouse (Mus musculus)]]|format=count}} > 0 |
<tr><th scope="row" align="right">map location:</th><td>{{#show:{{FULLPAGENAME}}|?map_location}}</td></tr>
<table class="wikitable mw-collapsible">
<tr><th scope="row" align="right">type of gene:</th><td>{{#if:{{{type_of_gene}}}|[[type_of_gene::{{{type_of_gene}}}]]|NA}}</td></tr>
<tr><th scope="col">Expression table (TPM)</th></tr>
<tr><th scope="row" align="right">Symbol from <br>nomenclature authority:</th><td>{{#if:{{{Symbol_from_nomenclature_authority}}}|[[Symbol_from_nomenclature_authority::{{{Symbol_from_nomenclature_authority}}}]]|NA}}</td></tr>
<tr><td>
<tr><th scope="row" align="right">Full name from <br> nomenclature authority:</th><td>{{#if:{{{Full_name_from_nomenclature_authority}}}|[[Full_name_from_nomenclature_authority::{{{Full_name_from_nomenclature_authority}}}]]|NA}}</td></tr>
<div style="height:300px; overflow:auto;">
<tr><th scope="row" align="right">Nomenclature status:</th><td>{{#if:{{{Nomenclature_status}}}|[[Nomenclature_status::{{{Nomenclature_status}}}]]|NA}}</td></tr>
<table class="wikitable sortable">
<tr><th scope="row" align="right">Other designations:</th><td>{{#if:{{{Other_designations}}}|{{#show:{{FULLPAGENAME}}|?Other_designations}}|NA}}</td></tr>
<tr>
<tr><th scope="row" align="right">Modification date:</th><td>{{#if:{{{Modification_date}}}|{{#time: d.m.Y |{{{Modification_date}}}}}|NA}}</td></tr>
<th scope="col">sample</th>
<th scope="col">
{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]][[Species::Mouse (Mus musculus)]]|?id|?short_description|limit=100|format=template|template=Entrezgene_cpphase1_exptable_header_mm9|sep=</th><th scope="col">}}
</th>
</tr>
{{#exptable_mm9:
{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]][[Species::Mouse (Mus musculus)]]
|?Phase1 expression
|limit=100
|format=list
|headers=hide
|sep=;;
|template=Ask1stprop
}}
}}
</table></div>
</td></tr>
</table>
}}
<!-- expression graph , from here -->
{{#if:{{#pos:{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|format=list}}|Hg19}}|
<table class="wikitable mw-collapsible">
<tr><th scope="col">Expression chart</th></tr>
<tr><td>
{{Flot_entrezgene_hg19|{{{GeneID}}}}}
</td></tr>
</table>
</table>
}}
{{#if:{{#pos:{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|format=list}}|Mm9}}|
<table class="wikitable mw-collapsible">
<tr><th scope="col">Expression chart</th></tr>
<tr><td>
{{Flot_entrezgene_mm9|{{{GeneID}}}}}
</td></tr>
</table>
}}


== Details ==
<table>
<tr><th scope="row" align="right">GeneID:</th><td>[[GeneID::{{{GeneID}}}]]</td></tr>
<tr><th scope="row" align="right">LocusTag:</th><td>[[LocusTag::{{{LocusTag}}}]]</td></tr>
<tr><th scope="row" align="right">chromosome:</th><td>[[chromosome::{{{chromosome}}}]]</td></tr>
<tr><th scope="row" align="right">map location:</th><td>{{#show:{{FULLPAGENAME}}|?map_location}}</td></tr>
<tr><th scope="row" align="right">type of gene:</th><td>[[type_of_gene::{{{type_of_gene}}}]]</td></tr>
<tr><th scope="row" align="right">Symbol from <br>nomenclature authority:</th><td>[[Symbol_from_nomenclature_authority::{{{Symbol_from_nomenclature_authority}}}]]</td></tr>
<tr><th scope="row" align="right">Full name from <br> nomenclature authority:</th><td>[[Full_name_from_nomenclature_authority::{{{Full_name_from_nomenclature_authority}}}]]</td></tr>
<tr><th scope="row" align="right">Nomenclature status:</th><td>[[Nomenclature_status::{{{Nomenclature_status}}}]]</td></tr>
<tr><th scope="row" align="right">Other designations:</th><td>{{#show:{{FULLPAGENAME}}|?Other_designations}}</td></tr>
<tr><th scope="row" align="right">Modification date:</th><td>[[Modification_date::{{{Modification_date}}}]]</td></tr>
<tr><th scope="row" align="right">transcription factor:</th><td>[[transcription_factor::{{{transcription_factor}}}]]</td></tr>
</table>




Line 139: Line 287:
{{#arraymap:{{{map_location}}}|;;|$|{{#set:map_location=$}}}}
{{#arraymap:{{{map_location}}}|;;|$|{{#set:map_location=$}}}}
{{#arraymap:{{{Other_designations}}}|;;|$|{{#set:Other_designations=$}}}}
{{#arraymap:{{{Other_designations}}}|;;|$|{{#set:Other_designations=$}}}}


[[Category:EntrezGene]]
[[Category:EntrezGene]]
<html>
 
<script language="javascript" type="text/javascript" src="/resource_browser/rb_js/flot/jquery.flot.js"></script>
{{#set:GeneID={{{GeneID}}}}}
<script language="javascript" type="text/javascript" src="/resource_browser/rb_js/flot/jquery.flot.axislabels.js"></script>
{{#set:LocusTag ={{{LocusTag}}}}}
</html>
{{#set:chromosome={{{chromosome}}}}}
{{#set:type_of_gene={{{type_of_gene}}}}}
{{#set:map_location={{{map_location}}}}}
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Latest revision as of 11:48, 22 September 2021

Symbol:{{{Symbol}}}
Description:{{{description}}}
Synonyms:
Species:NA
Xrefs:
EntrezGene:{{{GeneID}}}
{{{dbXrefs}}}:[NA ]
Associated motifs:NA
Transcripton Factor?: No

TSS regions



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TSS expression









  • Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data

No analysis results for this cluster

Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse

GeneID:{{{GeneID}}}
LocusTag:{{{LocusTag}}}
chromosome:{{{chromosome}}}
map location:
type of gene:{{{type_of_gene}}}
Symbol from
nomenclature authority:		{{{Symbol_from_nomenclature_authority}}}
Full name from
nomenclature authority:		{{{Full_name_from_nomenclature_authority}}}
Nomenclature status:{{{Nomenclature_status}}}
Other designations:
Modification date:Error: Invalid time.







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