UBERON:0000464: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000464 | |||
|is_a=UBERON:0000466 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=anatomical space | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=upper_level | ||
| | |synonym= | ||
|union_of= | |||
|xref=AAO:0010110;;AEO:0000005;;BILA:0000005;;CARO:0000005;;EHDAA2:0003005;;FBbt:00007017;;FMA:5897;;HAO:0000005;;TAO:0001668;;TGMA:0001825;;XAO:0003190;;ZFA:0001643 | |||
}} | }} | ||
Latest revision as of 17:09, 12 September 2014
| Name: | anatomical space | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH] | ||
| Xrefs: |
| ||
| Alt_id: | UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643 | ||
| Subset: | upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000466(immaterial anatomical entity) |
|---|
Children
| is a: | UBERON:0002224 (thoracic cavity),UBERON:0002553 (anatomical cavity),UBERON:0003199 (egg chamber),UBERON:0010064 (open anatomical space) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10058-101H4 (trachea, fetal, donor1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10058-101H4 (trachea, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000464 (anatomical space), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
