UBERON:0000483: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000483 | |||
|is_a=UBERON:0000119 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=epithelium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[AAO]" xsd:string;;UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[CARO]" xsd:string;;UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[TAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="epithelial tissue" EXACT [];;"portion of epithelium" EXACT [FMA:9639] | |||
|union_of=UBERON:0000486;;UBERON:0000490 | |||
|xref=AAO:0000144;;AAO:0010055;;AEO:0000066;;BILA:0000066;;BTO:0000416;;CARO:0000066;;EHDAA2:0003066;;FBbt:00007005;;FMA:9639;;GAID:402;;HAO:0000066;;http://upload.wikimedia.org/wikipedia/commons/c/c3/Tkanka_nablonkowa.png;;MESH:A.10.272;;ncithesaurus:Epithelium;;SCTID:31610004;;TAO:0001486;;VHOG:0000387;;XAO:0003045;;ZFA:0001486 | |||
}} | }} |
Latest revision as of 17:10, 12 September 2014
Name: | epithelium | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium] | ||
Xrefs: |
| ||
Synonyms: |
"epithelial tissue" EXACT [] "portion of epithelium" EXACT [FMA:9639] | ||
Alt_id: | UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000119(cell layer) |
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union_of: | UBERON:0000486(multilaminar epithelium),UBERON:0000490(unilaminar epithelium) |
Children
is a: | UBERON:0000486 (multilaminar epithelium),UBERON:0000488 (atypical epithelium),UBERON:0000490 (unilaminar epithelium),UBERON:0003350 (epithelium of mucosa),UBERON:0003914 (epithelial tube),UBERON:0003929 (gut epithelium),UBERON:0004807 (respiratory system epithelium),UBERON:0004808 (gastrointestinal system epithelium),UBERON:0004819 (kidney epithelium),UBERON:0005157 (epithelial fold),UBERON:0005891 (coelomic epithelium),UBERON:0005911 (endo-epithelium),UBERON:0006799 (glandular epithelium),UBERON:0006914 (squamous epithelium),UBERON:0007503 (epithelial vesicle),UBERON:0007625 (pigment epithelium of eye),UBERON:0010077 (cuboidal epithelium),UBERON:0010371 (ecto-epithelium),FF:0011477 (Ileum epithelium 1h after RANKL),FF:0011479 (Ileum epithelium 3h after RANKL),UBERON:0012274 (columnar epithelium),UBERON:0012275 (meso-epithelium),UBERON:0015807 (ear epithelium),FF:10263-104D2 (Follicle Associated Epithelium, pool3) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000483 (epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
7.96e-40 | FFCP PHASE1:Hg19::chr16:56672571..56672587,+#_76e91f605c6deacc627f56d119a01b07 | p2@MT1A |
7.96e-40 | FFCP PHASE2:Hg19::chr16:56672571..56672587,+#_76e91f605c6deacc627f56d119a01b07 | p2@MT1A |
2.77e-39 | FFCP PHASE2:Hg19::chr22:30792980..30793047,+#_a6a095b18bb2b23cd27e73f97eab2dfc | p1@SEC14L2 |
2.77e-39 | FFCP PHASE1:Hg19::chr22:30792980..30793047,+#_a6a095b18bb2b23cd27e73f97eab2dfc | p1@SEC14L2 |
1.0e-38 | FFCP PHASE2:Hg19::chr2:26205550..26205624,-#_19e4626008ea7a2373af930f90ecf6c1 | p1@KIF3C |
1.0e-38 | FFCP PHASE1:Hg19::chr2:26205550..26205624,-#_19e4626008ea7a2373af930f90ecf6c1 | p1@KIF3C |
1.1e-38 | FFCP PHASE2:Hg19::chr5:148521047..148521076,+#_63033551edd4342fe7cd94a723ad076b | p1@ABLIM3 |
1.1e-38 | FFCP PHASE1:Hg19::chr5:148521047..148521076,+#_63033551edd4342fe7cd94a723ad076b | p1@ABLIM3 |
1.83e-37 | FFCP PHASE2:Hg19::chr3:52001448..52001478,-#_a5a059a0c2543caa3b89193ea95c3f2d | p2@PCBP4 |
1.83e-37 | FFCP PHASE1:Hg19::chr3:52001448..52001478,-#_a5a059a0c2543caa3b89193ea95c3f2d | p2@PCBP4 |
2.51e-37 | FFCP PHASE1:Hg19::chr18:47088419..47088437,+#_2d5f15e02930ed0cc6ef8c7db5bb58ee | p1@LIPG |
2.51e-37 | FFCP PHASE2:Hg19::chr18:47088419..47088437,+#_2d5f15e02930ed0cc6ef8c7db5bb58ee | p1@LIPG |
3.78e-37 | FFCP PHASE1:Hg19::chr3:52001426..52001447,-#_94a2e5fd072d7622d4c009764d46b8a9 | p3@PCBP4 |
3.78e-37 | FFCP PHASE2:Hg19::chr3:52001426..52001447,-#_94a2e5fd072d7622d4c009764d46b8a9 | p3@PCBP4 |
6.15e-37 | FFCP PHASE2:Hg19::chr1:85930830..85930858,-#_a18e8881dae1e8feb13e513cb0cc96df | p1@DDAH1 |
6.15e-37 | FFCP PHASE1:Hg19::chr1:85930830..85930858,-#_a18e8881dae1e8feb13e513cb0cc96df | p1@DDAH1 |
8.11e-37 | FFCP PHASE2:Hg19::chr11:60691924..60691966,+#_452ad3e1bc5505abee268e99cf6c183d | p1@TMEM132A |
8.11e-37 | FFCP PHASE1:Hg19::chr11:60691924..60691966,+#_452ad3e1bc5505abee268e99cf6c183d | p1@TMEM132A |
8.61e-37 | FFCP PHASE1:Hg19::chr2:242498138..242498179,+#_ea8d8b58986afda688e5aaa10e13470e | p1@BOK |
8.61e-37 | FFCP PHASE2:Hg19::chr2:242498138..242498179,+#_ea8d8b58986afda688e5aaa10e13470e | p1@BOK |
9.21e-37 | FFCP PHASE2:Hg19::chrX:140271249..140271333,-#_0e789491d28ba6dbc0229842a76309a2 | p1@LDOC1 |
9.21e-37 | FFCP PHASE1:Hg19::chrX:140271249..140271333,-#_0e789491d28ba6dbc0229842a76309a2 | p1@LDOC1 |
1.96e-36 | FFCP PHASE2:Hg19::chrX:128977781..128977869,-#_8a5dd207f9ba3b0306ae8106200f0f3f | p1@ZDHHC9 |
1.96e-36 | FFCP PHASE1:Hg19::chrX:128977781..128977869,-#_8a5dd207f9ba3b0306ae8106200f0f3f | p1@ZDHHC9 |
2.56e-36 | FFCP PHASE1:Hg19::chr17:73389854..73389993,-#_c28230304b8ab6052f7b2ee7f8847d99 | p2@GRB2 |
2.56e-36 | FFCP PHASE2:Hg19::chr17:73389854..73389993,-#_c28230304b8ab6052f7b2ee7f8847d99 | p2@GRB2 |
6.53e-36 | FFCP PHASE2:Hg19::chrX:140271349..140271401,-#_d657db560be5647f8a3da0ab9c1449eb | p2@LDOC1 |
6.53e-36 | FFCP PHASE1:Hg19::chrX:140271349..140271401,-#_d657db560be5647f8a3da0ab9c1449eb | p2@LDOC1 |
9.8e-36 | FFCP PHASE2:Hg19::chr2:26205340..26205381,-#_09ff3bb93ded5b4b7887f1cd4a662110 | p2@KIF3C |
9.8e-36 | FFCP PHASE1:Hg19::chr2:26205340..26205381,-#_09ff3bb93ded5b4b7887f1cd4a662110 | p2@KIF3C |
1.89e-35 | FFCP PHASE2:Hg19::chr22:41697520..41697613,+#_bd4fe46c91dca45d4b38a9254e4d1a99 | p1@ZC3H7B |
1.89e-35 | FFCP PHASE1:Hg19::chr22:41697520..41697613,+#_bd4fe46c91dca45d4b38a9254e4d1a99 | p1@ZC3H7B |
2.95e-35 | FFCP PHASE1:Hg19::chr4:17513702..17513720,-#_d771470916f378963c36fafcb23e41e7 | p1@QDPR |
2.95e-35 | FFCP PHASE2:Hg19::chr4:17513702..17513720,-#_d771470916f378963c36fafcb23e41e7 | p1@QDPR |
6.03e-35 | FFCP PHASE2:Hg19::chr15:44487453..44487476,-#_fd17b9fa1aba5d502e5dab4d1f540da3 | p1@FRMD5 |
6.03e-35 | FFCP PHASE1:Hg19::chr15:44487453..44487476,-#_fd17b9fa1aba5d502e5dab4d1f540da3 | p1@FRMD5 |
9.98e-35 | FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_67ac59756e42fedb5cfe1f4ac056f354 | p1@CACNG7 |
9.98e-35 | FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_67ac59756e42fedb5cfe1f4ac056f354 | p1@CACNG7 |
1.07e-34 | FFCP PHASE1:Hg19::chr1:20812690..20812763,-#_db6c6d820409941d1706d6e072088701 | p1@CAMK2N1 |
1.07e-34 | FFCP PHASE2:Hg19::chr1:20812690..20812763,-#_db6c6d820409941d1706d6e072088701 | p1@CAMK2N1 |
1.22e-34 | FFCP PHASE2:Hg19::chr16:58534039..58534056,+#_8afb884e523291e4b120babe7517abc0 | p1@NDRG4 |
1.22e-34 | FFCP PHASE1:Hg19::chr16:58534039..58534056,+#_8afb884e523291e4b120babe7517abc0 | p1@NDRG4 |
1.47e-34 | FFCP PHASE2:Hg19::chr10:15413224..15413308,-#_cf04c2e2625437c6b8b77684d1b94399 | p2@FAM171A1 |
1.47e-34 | FFCP PHASE1:Hg19::chr10:15413224..15413308,-#_cf04c2e2625437c6b8b77684d1b94399 | p2@FAM171A1 |
4.0e-34 | FFCP PHASE1:Hg19::chr11:125366089..125366207,-#_8d1b736e03409532322e9f5eceeb70a4 | p1@FEZ1 |
4.0e-34 | FFCP PHASE2:Hg19::chr11:125366089..125366207,-#_8d1b736e03409532322e9f5eceeb70a4 | p1@FEZ1 |
4.72e-34 | FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_8ed72567f78ca148c35bd7969ea03f48 | p1@HHIP |
4.72e-34 | FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_8ed72567f78ca148c35bd7969ea03f48 | p1@HHIP |
5.32e-34 | FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_728f436fb4b26f342b80411bd45f9eff | p@chr19:54411852..54411908, + |
5.32e-34 | FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_728f436fb4b26f342b80411bd45f9eff | p@chr19:54411852..54411908, + |
6.75e-34 | FFCP PHASE1:Hg19::chr16:765092..765169,+#_f6ba5d92624852985e3a6d679300fe7f | p1@METRN |
6.75e-34 | FFCP PHASE2:Hg19::chr16:765092..765169,+#_f6ba5d92624852985e3a6d679300fe7f | p1@METRN |
8.27e-34 | FFCP PHASE2:Hg19::chr3:52001396..52001425,-#_da29bed377641651a0f2bb16c489f818 | p4@PCBP4 |
8.27e-34 | FFCP PHASE1:Hg19::chr3:52001396..52001425,-#_da29bed377641651a0f2bb16c489f818 | p4@PCBP4 |
1.22e-33 | FFCP PHASE2:Hg19::chr3:170136642..170136663,+#_bdafbacc95038dc945c82726aaa1706f | p1@CLDN11 |
1.22e-33 | FFCP PHASE1:Hg19::chr3:170136642..170136663,+#_bdafbacc95038dc945c82726aaa1706f | p1@CLDN11 |
1.52e-33 | FFCP PHASE2:Hg19::chr22:38669002..38669024,-#_0428250f4421849cd364df92d9474cf8 | p1@TMEM184B |
1.52e-33 | FFCP PHASE1:Hg19::chr22:38669002..38669024,-#_0428250f4421849cd364df92d9474cf8 | p1@TMEM184B |
2.38e-33 | FFCP PHASE2:Hg19::chr19:48281989..48282000,+#_ba925ab9ad9c7e19b0e9ab76ae32e1ad | p3@SEPW1 |
2.38e-33 | FFCP PHASE1:Hg19::chr19:48281989..48282000,+#_ba925ab9ad9c7e19b0e9ab76ae32e1ad | p3@SEPW1 |
2.73e-33 | FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_aee2f23640996dc9a749c60ada6b3cfe | p1@FAM171A1 |
2.73e-33 | FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_aee2f23640996dc9a749c60ada6b3cfe | p1@FAM171A1 |
2.89e-33 | FFCP PHASE1:Hg19::chr16:89989741..89989759,+#_26d4267864c957fe25a6ca708299b61b | p1@TUBB3 |
2.89e-33 | FFCP PHASE2:Hg19::chr16:89989741..89989759,+#_26d4267864c957fe25a6ca708299b61b | p1@TUBB3 |
3.49e-33 | FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_8ab208e708cb29122f8d996a7fc40b95 | p1@BIN1 |
3.49e-33 | FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_8ab208e708cb29122f8d996a7fc40b95 | p1@BIN1 |
5.84e-33 | FFCP PHASE2:Hg19::chr17:40118805..40118822,+#_fab15ff5379421151e52c38588e2a052 | p1@CNP |
5.84e-33 | FFCP PHASE1:Hg19::chr17:40118805..40118822,+#_fab15ff5379421151e52c38588e2a052 | p1@CNP |
6.27e-33 | FFCP PHASE2:Hg19::chr17:19265883..19265958,-#_42595e05187953c28a206452b2523b09 | p1@B9D1 |
6.27e-33 | FFCP PHASE1:Hg19::chr17:19265883..19265958,-#_42595e05187953c28a206452b2523b09 | p1@B9D1 |
8.28e-33 | FFCP PHASE1:Hg19::chrX:134166360..134166371,+#_4737978c41c0d24707723e50e98a5768 | p2@FAM127A |
8.28e-33 | FFCP PHASE2:Hg19::chrX:134166360..134166371,+#_4737978c41c0d24707723e50e98a5768 | p2@FAM127A |
8.3e-33 | FFCP PHASE1:Hg19::chr2:27718052..27718127,-#_f6683b45a72e944624262ba922c43b48 | p1@FNDC4 |
8.3e-33 | FFCP PHASE2:Hg19::chr2:27718052..27718127,-#_f6683b45a72e944624262ba922c43b48 | p1@FNDC4 |
1.07e-32 | FFCP PHASE2:Hg19::chr3:48130707..48130789,-#_3defbd1ea708bbe4a91ff9ec97a06618 | p4@MAP4 |
1.07e-32 | FFCP PHASE1:Hg19::chr3:48130707..48130789,-#_3defbd1ea708bbe4a91ff9ec97a06618 | p4@MAP4 |
1.32e-32 | FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_6806fdc0b6d278c9600d61d9161b006e | p4@S100A16 |
1.32e-32 | FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_6806fdc0b6d278c9600d61d9161b006e | p4@S100A16 |
1.69e-32 | FFCP PHASE1:Hg19::chr20:30310656..30310685,-#_27a8311799952f24bc3ab18d387ed7de | p1@BCL2L1 |
1.69e-32 | FFCP PHASE2:Hg19::chr20:30310656..30310685,-#_27a8311799952f24bc3ab18d387ed7de | p1@BCL2L1 |
2.07e-32 | FFCP PHASE1:Hg19::chr3:48130317..48130396,-#_71cad29d132f6b7a6188cbb416084a9c | p1@MAP4 |
2.07e-32 | FFCP PHASE2:Hg19::chr3:48130317..48130396,-#_71cad29d132f6b7a6188cbb416084a9c | p1@MAP4 |
2.23e-32 | FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_5b880dacef3dc529c1ce5c79d5ee52cb | p1@NFIB |
2.23e-32 | FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_5b880dacef3dc529c1ce5c79d5ee52cb | p1@NFIB |
2.56e-32 | FFCP PHASE1:Hg19::chrX:134166376..134166394,+#_17a52e698630a7723c17e65a0aa2aaa7 | p1@FAM127A |
2.56e-32 | FFCP PHASE2:Hg19::chrX:134166376..134166394,+#_17a52e698630a7723c17e65a0aa2aaa7 | p1@FAM127A |
2.69e-32 | FFCP PHASE1:Hg19::chr20:62327996..62328013,+#_959daba4d91b71af48606ea101e467a5 | p1@TNFRSF6B |
2.69e-32 | FFCP PHASE2:Hg19::chr20:62327996..62328013,+#_959daba4d91b71af48606ea101e467a5 | p1@TNFRSF6B |
3.67e-32 | FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_9b5052a7c7bbe273e9951edac23d66c0 | p2@HHIP |
3.67e-32 | FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_9b5052a7c7bbe273e9951edac23d66c0 | p2@HHIP |
6.28e-32 | FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_99aee4e4e101a9376cc85024025d4c5a | p1@GPR4, p2@OPA3 |
6.28e-32 | FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_99aee4e4e101a9376cc85024025d4c5a | p1@GPR4, p2@OPA3 |
7.86e-32 | FFCP PHASE1:Hg19::chr1:20812315..20812327,-#_c9e5dbffcb271c7cbee684ba709b5d4f | p4@CAMK2N1 |
7.86e-32 | FFCP PHASE2:Hg19::chr1:20812315..20812327,-#_c9e5dbffcb271c7cbee684ba709b5d4f | p4@CAMK2N1 |
8.33e-32 | FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_add3f5a591a2aad0250f7305d4378354 | p2@NFIB |
8.33e-32 | FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_add3f5a591a2aad0250f7305d4378354 | p2@NFIB |
1.2e-31 | FFCP PHASE1:Hg19::chr9:132934622..132934699,+#_2c12c156110ee380853d6347da096e7e | p1@NCS1 |
1.2e-31 | FFCP PHASE2:Hg19::chr9:132934622..132934699,+#_2c12c156110ee380853d6347da096e7e | p1@NCS1 |
1.29e-31 | FFCP PHASE1:Hg19::chr1:79472365..79472443,-#_bbe6027643a0e1a3d255887ffcace202 | p1@ELTD1 |
1.29e-31 | FFCP PHASE2:Hg19::chr1:79472365..79472443,-#_bbe6027643a0e1a3d255887ffcace202 | p1@ELTD1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[CARO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.