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{{UBERON
{{UBERON
|id=UBERON:0001874
|alt_id=UBERON:FMA_61834-MA_0000895
|name=putamen
|anatomical_img_id=FMA:61834
|namespace=
|def="Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen]
|xref=BM:Tel-Pu;;EV:0100187;;FMA:61834;;GAID:671;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png;;MA:0000895;;MESH:A.08.186.211.730.885.105.487.550.784;;ncithesaurus:Putamen;;NIF_GrossAnatomy:birnlex_809;;SCTID:281512002;;VHOG:0001456
|is_a=UBERON:0002308;;UBERON:0009663
|synonym="nucleus putamen" EXACT []
|comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
|comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
|alt_id=UBERON:FMA_61834-MA_0000895
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001874
|is_a=UBERON:0009663
|is_obsolete=
|located_in=
|located_in=
|name=putamen
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001869;;UBERON:0002435;;UBERON:0005383
|part_of=UBERON:0001869;;UBERON:0002435;;UBERON:0005383
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="nucleus putamen" EXACT []
|union_of=
|xref=BM:Tel-Pu;;EV:0100187;;FMA:61834;;GAID:671;;http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png;;MA:0000895;;MESH:A.08.186.211.730.885.105.487.550.784;;ncithesaurus:Putamen;;NIF_GrossAnatomy:birnlex_809;;SCTID:281512002;;VHOG:0001456
}}
}}

Latest revision as of 17:21, 12 September 2014

Name:putamen
Namespace:FANTOM
Definition:"Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen]
Xrefs:
links:

BM:Tel-Pu
EV:0100187
FMA:61834
GAID:671
[1]
[ 200px-BrainCaudatePutamen.svg.png 200px-BrainCaudatePutamen.svg.png]
MA:0000895
MESH:A.08.186.211.730.885.105.487.550.784
ncithesaurus:Putamen
NIF_GrossAnatomy:birnlex_809
SCTID:281512002

VHOG:0001456
Synonyms: "nucleus putamen" EXACT []
Comments:CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
Alt_id: UBERON:FMA_61834-MA_0000895
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009663(telencephalic nucleus)
part_of:UBERON:0001869(cerebral hemisphere),UBERON:0002435(striatum),UBERON:0005383(caudate-putamen)



Children

is a:FF:10365-105F5 (putamen, newborn, donor10223),FF:10372-105G3 (putamen, adult, donor10258)
derives from:FF:0010087 (human putamen - adult donor sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001874 (putamen), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr7:29218060..29218067,-#_5016b4e8f653773108855684fc348c5dp@chr7:29218060..29218067, -
5.42e-195FFCP PHASE2:Hg19::chr7:29218060..29218067,-#_5016b4e8f653773108855684fc348c5dp@chr7:29218060..29218067, -
5.42e-195FFCP PHASE2:Hg19::chr15:28197051..28197058,-#_5016b4e8f653773108855684fc348c5dp@chr15:28197051..28197058, -
5.42e-195FFCP PHASE1:Hg19::chr15:28197051..28197058,-#_5016b4e8f653773108855684fc348c5dp@chr15:28197051..28197058, -
9.37e-99FFCP PHASE1:Hg19::chr11:18765490..18765499,-#_31e51a0e6a932dc2139a361d410ec5aep16@PTPN5
9.37e-99FFCP PHASE1:Hg19::chr10:26097547..26097552,+#_31e51a0e6a932dc2139a361d410ec5aep@chr10:26097547..26097552, +
9.37e-99FFCP PHASE1:Hg19::chr6:145132482..145132485,+#_31e51a0e6a932dc2139a361d410ec5aep@chr6:145132482..145132485, +
9.37e-99FFCP PHASE1:Hg19::chr15:26273479..26273488,+#_31e51a0e6a932dc2139a361d410ec5aep@chr15:26273479..26273488, +
9.37e-99FFCP PHASE2:Hg19::chr6:145132482..145132485,+#_31e51a0e6a932dc2139a361d410ec5aep@chr6:145132482..145132485, +
9.37e-99FFCP PHASE1:Hg19::chr19:49016307..49016316,-#_31e51a0e6a932dc2139a361d410ec5aep@chr19:49016307..49016316, -
9.37e-99FFCP PHASE1:Hg19::chr4:185115370..185115380,-#_31e51a0e6a932dc2139a361d410ec5aep@chr4:185115370..185115380, -
9.37e-99FFCP PHASE1:Hg19::chr9:85575924..85575932,+#_31e51a0e6a932dc2139a361d410ec5aep@chr9:85575924..85575932, +
9.37e-99FFCP PHASE2:Hg19::chr19:49016307..49016316,-#_31e51a0e6a932dc2139a361d410ec5aep@chr19:49016307..49016316, -
9.37e-99FFCP PHASE2:Hg19::chr4:185115370..185115380,-#_31e51a0e6a932dc2139a361d410ec5aep@chr4:185115370..185115380, -
9.37e-99FFCP PHASE2:Hg19::chr9:85575924..85575932,+#_31e51a0e6a932dc2139a361d410ec5aep@chr9:85575924..85575932, +
9.37e-99FFCP PHASE2:Hg19::chr10:26097547..26097552,+#_31e51a0e6a932dc2139a361d410ec5aep@chr10:26097547..26097552, +
9.37e-99FFCP PHASE1:Hg19::chrX:82763874..82763884,+#_31e51a0e6a932dc2139a361d410ec5aep@chrX:82763874..82763884, +
9.37e-99FFCP PHASE2:Hg19::chr11:18765490..18765499,-#_31e51a0e6a932dc2139a361d410ec5aep16@PTPN5
9.37e-99FFCP PHASE2:Hg19::chrX:82763874..82763884,+#_31e51a0e6a932dc2139a361d410ec5aep@chrX:82763874..82763884, +
9.37e-99FFCP PHASE2:Hg19::chr4:156417309..156417316,+#_31e51a0e6a932dc2139a361d410ec5aep@chr4:156417309..156417316, +
9.37e-99FFCP PHASE2:Hg19::chr21:27651095..27651104,+#_31e51a0e6a932dc2139a361d410ec5aep@chr21:27651095..27651104, +
9.37e-99FFCP PHASE1:Hg19::chr4:156417309..156417316,+#_31e51a0e6a932dc2139a361d410ec5aep@chr4:156417309..156417316, +
9.37e-99FFCP PHASE1:Hg19::chr21:27651095..27651104,+#_31e51a0e6a932dc2139a361d410ec5aep@chr21:27651095..27651104, +
9.37e-99FFCP PHASE2:Hg19::chr15:26273479..26273488,+#_31e51a0e6a932dc2139a361d410ec5aep@chr15:26273479..26273488, +
2.55e-98FFCP PHASE2:Hg19::chr17:17642493..17642503,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr17:17642493..17642503, +
2.55e-98FFCP PHASE1:Hg19::chr3:11019677..11019690,-#_bdef015ef52ff2d979fa5736ad81d3a6p@chr3:11019677..11019690, -
2.55e-98FFCP PHASE2:Hg19::chr3:11019677..11019690,-#_bdef015ef52ff2d979fa5736ad81d3a6p@chr3:11019677..11019690, -
2.55e-98FFCP PHASE1:Hg19::chrX:110463772..110463784,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chrX:110463772..110463784, +
2.55e-98FFCP PHASE2:Hg19::chrX:110463772..110463784,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chrX:110463772..110463784, +
2.55e-98FFCP PHASE2:Hg19::chr17:17642516..17642523,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr17:17642516..17642523, +
2.55e-98FFCP PHASE1:Hg19::chr17:17642493..17642503,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr17:17642493..17642503, +
2.55e-98FFCP PHASE1:Hg19::chr5:132607538..132607543,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr5:132607538..132607543, +
2.55e-98FFCP PHASE2:Hg19::chr5:132607538..132607543,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr5:132607538..132607543, +
2.55e-98FFCP PHASE1:Hg19::chr4:47408745..47408748,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr4:47408745..47408748, +
2.55e-98FFCP PHASE2:Hg19::chr4:47408745..47408748,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr4:47408745..47408748, +
2.55e-98FFCP PHASE2:Hg19::chr16:5945370..5945377,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr16:5945370..5945377, +
2.55e-98FFCP PHASE1:Hg19::chr1:244945778..244945781,-#_bdef015ef52ff2d979fa5736ad81d3a6p@chr1:244945778..244945781, -
2.55e-98FFCP PHASE1:Hg19::chr17:17642516..17642523,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr17:17642516..17642523, +
2.55e-98FFCP PHASE2:Hg19::chr1:244945778..244945781,-#_bdef015ef52ff2d979fa5736ad81d3a6p@chr1:244945778..244945781, -
2.55e-98FFCP PHASE1:Hg19::chr7:14943137..14943144,-#_bdef015ef52ff2d979fa5736ad81d3a6p25@DGKB
2.55e-98FFCP PHASE1:Hg19::chr2:132589601..132589606,-#_bdef015ef52ff2d979fa5736ad81d3a6p2@ENST00000437330
2.55e-98FFCP PHASE2:Hg19::chr2:132589601..132589606,-#_bdef015ef52ff2d979fa5736ad81d3a6p2@ENST00000437330
2.55e-98FFCP PHASE2:Hg19::chr7:14943137..14943144,-#_bdef015ef52ff2d979fa5736ad81d3a6p25@DGKB
2.55e-98FFCP PHASE1:Hg19::chr16:5945370..5945377,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr16:5945370..5945377, +
2.55e-98FFCP PHASE1:Hg19::chr5:163792789..163792792,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr5:163792789..163792792, +
2.55e-98FFCP PHASE2:Hg19::chr5:163792789..163792792,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr5:163792789..163792792, +
2.55e-98FFCP PHASE1:Hg19::chr4:185115354..185115359,-#_bdef015ef52ff2d979fa5736ad81d3a6p@chr4:185115354..185115359, -
2.55e-98FFCP PHASE2:Hg19::chr14:64884595..64884607,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr14:64884595..64884607, +
2.55e-98FFCP PHASE1:Hg19::chr14:64884595..64884607,+#_bdef015ef52ff2d979fa5736ad81d3a6p@chr14:64884595..64884607, +
2.55e-98FFCP PHASE2:Hg19::chr4:185115354..185115359,-#_bdef015ef52ff2d979fa5736ad81d3a6p@chr4:185115354..185115359, -
1.23e-66FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_308bf6ab5017221bbf4817c3df8f35edp2@DGKH
1.23e-66FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_308bf6ab5017221bbf4817c3df8f35edp2@DGKH
1.23e-66FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_308bf6ab5017221bbf4817c3df8f35edp@chr11:47617035..47617045, -
1.23e-66FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_308bf6ab5017221bbf4817c3df8f35edp27@GNAL
1.23e-66FFCP PHASE2:Hg19::chr2:2746794..2746795,-#_308bf6ab5017221bbf4817c3df8f35edp@chr2:2746794..2746795, -
1.23e-66FFCP PHASE2:Hg19::chr15:92236013..92236021,+#_308bf6ab5017221bbf4817c3df8f35edp@chr15:92236013..92236021, +
1.23e-66FFCP PHASE1:Hg19::chr15:92236013..92236021,+#_308bf6ab5017221bbf4817c3df8f35edp@chr15:92236013..92236021, +
1.23e-66FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_308bf6ab5017221bbf4817c3df8f35edp@chrX:102663083..102663098, +
1.23e-66FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_308bf6ab5017221bbf4817c3df8f35edp@chrX:102663083..102663098, +
1.23e-66FFCP PHASE1:Hg19::chr2:2746794..2746795,-#_308bf6ab5017221bbf4817c3df8f35edp@chr2:2746794..2746795, -
1.23e-66FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_308bf6ab5017221bbf4817c3df8f35edp@chr4:71945904..71945922, +
1.23e-66FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_308bf6ab5017221bbf4817c3df8f35edp@chr4:71945904..71945922, +
1.23e-66FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_308bf6ab5017221bbf4817c3df8f35edp@chr11:47617035..47617045, -
1.23e-66FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_308bf6ab5017221bbf4817c3df8f35edp@chr3:63542313..63542321, +
1.23e-66FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_308bf6ab5017221bbf4817c3df8f35edp@chr3:63542313..63542321, +
1.23e-66FFCP PHASE1:Hg19::chr5:132149081..132149086,+#_308bf6ab5017221bbf4817c3df8f35edp8@SOWAHA
1.23e-66FFCP PHASE2:Hg19::chr5:132149081..132149086,+#_308bf6ab5017221bbf4817c3df8f35edp8@SOWAHA
1.23e-66FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_308bf6ab5017221bbf4817c3df8f35edp27@GNAL
2.39e-66FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_0df18690229dbf909ed24e4568f3af68p11@SCN8A
2.39e-66FFCP PHASE2:Hg19::chr11:63213436..63213461,-#_0df18690229dbf909ed24e4568f3af68p@chr11:63213436..63213461, -
2.39e-66FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_0df18690229dbf909ed24e4568f3af68p11@SCN8A
2.39e-66FFCP PHASE1:Hg19::chr10:66185829..66185832,+#_0df18690229dbf909ed24e4568f3af68p@chr10:66185829..66185832, +
2.39e-66FFCP PHASE1:Hg19::chr11:30038451..30038462,-#_0df18690229dbf909ed24e4568f3af68p3@KCNA4
2.39e-66FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_0df18690229dbf909ed24e4568f3af68p@chr8:115354253..115354290, +
2.39e-66FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_0df18690229dbf909ed24e4568f3af68p@chr8:115354253..115354290, +
2.39e-66FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_0df18690229dbf909ed24e4568f3af68p@chr15:37777334..37777345, -
2.39e-66FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_0df18690229dbf909ed24e4568f3af68p@chr15:37777334..37777345, -
2.39e-66FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_0df18690229dbf909ed24e4568f3af68p@chr18:47967443..47967452, -
2.39e-66FFCP PHASE1:Hg19::chrX:38429964..38429975,+#_0df18690229dbf909ed24e4568f3af68p11@TSPAN7
2.39e-66FFCP PHASE2:Hg19::chr4:158224716..158224732,+#_0df18690229dbf909ed24e4568f3af68p1@CU688562
2.39e-66FFCP PHASE2:Hg19::chrX:38429964..38429975,+#_0df18690229dbf909ed24e4568f3af68p11@TSPAN7
2.39e-66FFCP PHASE1:Hg19::chr4:158224716..158224732,+#_0df18690229dbf909ed24e4568f3af68p1@CU688562
2.39e-66FFCP PHASE1:Hg19::chr5:138298043..138298048,+#_0df18690229dbf909ed24e4568f3af68p@chr5:138298043..138298048, +
2.39e-66FFCP PHASE2:Hg19::chr11:30037513..30037524,-#_0df18690229dbf909ed24e4568f3af68p@chr11:30037513..30037524, -
2.39e-66FFCP PHASE2:Hg19::chr5:138298043..138298048,+#_0df18690229dbf909ed24e4568f3af68p@chr5:138298043..138298048, +
2.39e-66FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_0df18690229dbf909ed24e4568f3af68p@chr18:47967443..47967452, -
2.39e-66FFCP PHASE1:Hg19::chr11:63213436..63213461,-#_0df18690229dbf909ed24e4568f3af68p@chr11:63213436..63213461, -
2.39e-66FFCP PHASE2:Hg19::chr10:66185829..66185832,+#_0df18690229dbf909ed24e4568f3af68p@chr10:66185829..66185832, +
2.39e-66FFCP PHASE2:Hg19::chr11:30038451..30038462,-#_0df18690229dbf909ed24e4568f3af68p3@KCNA4
2.39e-66FFCP PHASE1:Hg19::chr19:18228941..18228948,+#_0df18690229dbf909ed24e4568f3af68p@chr19:18228941..18228948, +
2.39e-66FFCP PHASE1:Hg19::chr22:27767706..27767718,+#_0df18690229dbf909ed24e4568f3af68p@chr22:27767706..27767718, +
2.39e-66FFCP PHASE1:Hg19::chr8:91248240..91248267,+#_0df18690229dbf909ed24e4568f3af68p@chr8:91248240..91248267, +
2.39e-66FFCP PHASE2:Hg19::chr19:18228941..18228948,+#_0df18690229dbf909ed24e4568f3af68p@chr19:18228941..18228948, +
2.39e-66FFCP PHASE2:Hg19::chr22:27767706..27767718,+#_0df18690229dbf909ed24e4568f3af68p@chr22:27767706..27767718, +
2.39e-66FFCP PHASE2:Hg19::chr8:91248240..91248267,+#_0df18690229dbf909ed24e4568f3af68p@chr8:91248240..91248267, +
2.39e-66FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_0df18690229dbf909ed24e4568f3af68p22@PRLR
2.39e-66FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_0df18690229dbf909ed24e4568f3af68p22@PRLR
2.39e-66FFCP PHASE1:Hg19::chr11:30037513..30037524,-#_0df18690229dbf909ed24e4568f3af68p@chr11:30037513..30037524, -
4.66e-66FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_2192e803320cd993e4f9a326ccada474p@chr18:54898506..54898515, +
4.66e-66FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_2192e803320cd993e4f9a326ccada474p@chr17:7271778..7271784, +

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