UBERON:0002200: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_74710-ZFA_0001267 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="A vasculature that is part of a head [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002200 | |||
|is_a=UBERON:0002049 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=vasculature of head | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000033 | |part_of=UBERON:0000033 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=vertebrate_core | ||
| | |synonym="adult head vascular network" EXACT [OBOL:automatic];;"adult head vasculature" EXACT [OBOL:automatic];;"cranial vasculature" EXACT [];;"head vascular network" EXACT [OBOL:automatic];;"head vasculature" RELATED [];;"vascular network of adult head" EXACT [OBOL:automatic];;"vascular network of head" EXACT [OBOL:automatic];;"vasculature of adult head" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=EFO:0003656;;FMA:74710;;TAO:0001267;;XAO:0004152;;ZFA:0001267 | |||
}} | }} | ||
Latest revision as of 17:27, 12 September 2014
| Name: | vasculature of head | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A vasculature that is part of a head [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"adult head vascular network" EXACT [OBOL:automatic] "adult head vasculature" EXACT [OBOL:automatic] "cranial vasculature" EXACT [] "head vascular network" EXACT [OBOL:automatic] "head vasculature" RELATED [] "vascular network of adult head" EXACT [OBOL:automatic] "vascular network of head" EXACT [OBOL:automatic] "vasculature of adult head" EXACT [OBOL:automatic] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_74710-ZFA_0001267 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002049(vasculature) |
|---|---|
| part_of: | UBERON:0000033(head) |
Children
| is a: | UBERON:0002203 (vasculature of eye),UBERON:0011362 (cranial blood vasculature) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11532-120A2 (Trabecular Meshwork Cells, donor1)
- 11610-120I8
- 11612-122A1 (Trabecular Meshwork Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002200 (vasculature of head), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.51e-104 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_9dd0fc85db4edde27196b808642491bc | p@chrX:106198807..106198826, - |
| 1.51e-104 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_9dd0fc85db4edde27196b808642491bc | p@chrX:106198807..106198826, - |
| 2.17e-75 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_f7b24e805f68162f7faecb7787c88729 | p1@BC033145 |
| 2.17e-75 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_f7b24e805f68162f7faecb7787c88729 | p1@BC033145 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_e5ea37d7f4883c2600f23deeee77f337 | p@chr7:115723897..115723915, - |
| 2.58e-74 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_e5ea37d7f4883c2600f23deeee77f337 | p@chr7:115723897..115723915, - |
| 4.26e-74 | FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_b3b2bc9896b53dfee6ee9fb68d5cd58a | p@chr12:97856211..97856221, + |
| 4.26e-74 | FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_b3b2bc9896b53dfee6ee9fb68d5cd58a | p@chr12:97856211..97856221, + |
| 8.15e-60 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_097be7ecec983d777855ba38b79744db | p@chr7:115723925..115723935, - |
| 8.15e-60 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_097be7ecec983d777855ba38b79744db | p@chr7:115723925..115723935, - |
| 9.96e-60 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_49c9a7be63be17556568a298e7558d33 | p@chr2:35680607..35680613, - |
| 9.96e-60 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_49c9a7be63be17556568a298e7558d33 | p@chr2:35680607..35680613, - |
| 1.49e-59 | FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_23e893842d856f0911b79846b5c5e229 | p5@SFRP1 |
| 1.49e-59 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_23e893842d856f0911b79846b5c5e229 | p@chr13:36052762..36052767, - |
| 1.49e-59 | FFCP PHASE1:Hg19::chr8:41119800..41119811,-#_23e893842d856f0911b79846b5c5e229 | p5@SFRP1 |
| 1.49e-59 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_23e893842d856f0911b79846b5c5e229 | p@chr13:36052762..36052767, - |
| 1.82e-59 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_fff4bf6d4fa575089cd1daeddd6c384b | p@chr7:131803806..131803815, + |
| 1.82e-59 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_fff4bf6d4fa575089cd1daeddd6c384b | p@chr7:131803806..131803815, + |
| 2.72e-59 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_9f5ac1ac795e942b58b6f5ce5537dab0 | p@chr16:58896129..58896134, - |
| 2.72e-59 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_9f5ac1ac795e942b58b6f5ce5537dab0 | p@chr16:58896129..58896134, - |
| 1.03e-52 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_458a564957f84e0f467eea777bcd7af9 | p1@CLRN1 |
| 1.03e-52 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_458a564957f84e0f467eea777bcd7af9 | p1@CLRN1 |
| 2.01e-52 | FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_02d01e4b3db064d77466a20e2d273199 | p@chr8:124692287..124692298, + |
| 2.01e-52 | FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_02d01e4b3db064d77466a20e2d273199 | p@chr8:124692287..124692298, + |
| 3.84e-50 | FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_00dce12a8f3172ca3f8f2396a8b0e94a | p33@PRKCH |
| 3.84e-50 | FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_00dce12a8f3172ca3f8f2396a8b0e94a | p33@PRKCH |
| 7.51e-50 | FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_b3998f1462c4894a9a5b9dd4a3630bb7 | p2@RIPPLY1 |
| 7.51e-50 | FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_b3998f1462c4894a9a5b9dd4a3630bb7 | p2@RIPPLY1 |
| 9.31e-45 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_41d60cc173f612fbaf5c1541ec90785e | p7@PTPRU |
| 9.31e-45 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_41d60cc173f612fbaf5c1541ec90785e | p7@PTPRU |
| 9.76e-45 | FFCP PHASE2:Hg19::chr2:210798666..210798677,+#_0a29218b0b1b3c3036e0d8e0e8152a7f | p@chr2:210798666..210798677, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr2:210798666..210798677,+#_0a29218b0b1b3c3036e0d8e0e8152a7f | p@chr2:210798666..210798677, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr5:78112479..78112482,+#_0a29218b0b1b3c3036e0d8e0e8152a7f | p@chr5:78112479..78112482, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr5:78112479..78112482,+#_0a29218b0b1b3c3036e0d8e0e8152a7f | p@chr5:78112479..78112482, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_2a7c9315d1d5e6a9eafb0ac037909e89 | p@chr13:36052713..36052724, - |
| 1.52e-44 | FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_2a7c9315d1d5e6a9eafb0ac037909e89 | p@chr13:36052713..36052724, - |
| 4.21e-43 | FFCP PHASE2:Hg19::chr11:27240276..27240289,-#_d3579b46e1319d75c07b5a630f397553 | p1@ENST00000526061 |
| 4.21e-43 | FFCP PHASE1:Hg19::chr11:27240276..27240289,-#_d3579b46e1319d75c07b5a630f397553 | p1@ENST00000526061 |
| 6.48e-43 | FFCP PHASE2:Hg19::chr10:91294399..91294401,-#_192ef600f5374bc8048719e6fd5cd1e9 | p@chr10:91294399..91294401, - |
| 6.48e-43 | FFCP PHASE1:Hg19::chr10:91294399..91294401,-#_192ef600f5374bc8048719e6fd5cd1e9 | p@chr10:91294399..91294401, - |
| 9.96e-43 | FFCP PHASE2:Hg19::chr7:43417422..43417435,+#_291e1bb07f157288db20aede89cca05d | p16@HECW1 |
| 9.96e-43 | FFCP PHASE1:Hg19::chr7:43417422..43417435,+#_291e1bb07f157288db20aede89cca05d | p16@HECW1 |
| 4.07e-42 | FFCP PHASE2:Hg19::chr22:31536360..31536389,-#_76e6ab6311671b66ec2831b678b4e811 | p4@PLA2G3 |
| 4.07e-42 | FFCP PHASE1:Hg19::chr22:31536360..31536389,-#_76e6ab6311671b66ec2831b678b4e811 | p4@PLA2G3 |
| 2.21e-41 | FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_7d95d6528acba281033c640256f1b2cb | p@chr2:66670833..66670853, + |
| 2.21e-41 | FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_7d95d6528acba281033c640256f1b2cb | p@chr2:66670833..66670853, + |
| 3.35e-41 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_c0b3921f2adebcd24faf39f93c059b03 | p1@OPTC |
| 3.35e-41 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_c0b3921f2adebcd24faf39f93c059b03 | p1@OPTC |
| 4.56e-41 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_8e38b774241bc9dd3b4797546825f559 | p3@SIX6 |
| 4.56e-41 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_8e38b774241bc9dd3b4797546825f559 | p3@SIX6 |
| 1.28e-40 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_95cf11470ff28125b7a6e5db7ffcc9f1 | p8@NBEA |
| 1.28e-40 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_95cf11470ff28125b7a6e5db7ffcc9f1 | p8@NBEA |
| 1.92e-40 | FFCP PHASE2:Hg19::chr14:68569696..68569698,-#_11dfb52eff7bcbad90c99eeb9dbade49 | p@chr14:68569696..68569698, - |
| 1.92e-40 | FFCP PHASE1:Hg19::chr14:68569696..68569698,-#_11dfb52eff7bcbad90c99eeb9dbade49 | p@chr14:68569696..68569698, - |
| 2.55e-38 | FFCP PHASE2:Hg19::chr14:80892074..80892111,-#_d3811e84ac168e5f1db0900b7a52de79 | p@chr14:80892074..80892111, - |
| 2.55e-38 | FFCP PHASE1:Hg19::chr14:80892074..80892111,-#_d3811e84ac168e5f1db0900b7a52de79 | p@chr14:80892074..80892111, - |
| 4.9e-38 | FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_452f79a0375f67fcade689e538d4351c | p3@ENST00000437916 |
| 4.9e-38 | FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_452f79a0375f67fcade689e538d4351c | p3@ENST00000437916 |
| 9.19e-38 | FFCP PHASE2:Hg19::chr8:94713146..94713159,+#_f297a4ac1a77f24ae70619a97c3dc73a | p8@FAM92A1 |
| 9.19e-38 | FFCP PHASE1:Hg19::chr8:94713146..94713159,+#_f297a4ac1a77f24ae70619a97c3dc73a | p8@FAM92A1 |
| 1.07e-37 | FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_9c87322426bcd40a396758416f39abc8 | p1@ENST00000448923 |
| 1.07e-37 | FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_9c87322426bcd40a396758416f39abc8 | p1@ENST00000448923 |
| 1.18e-37 | FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_1a86819a5134ffa5b2ff3cc2eff6dc50 | p3@ENST00000505537 |
| 1.18e-37 | FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_1a86819a5134ffa5b2ff3cc2eff6dc50 | p3@ENST00000505537 |
| 5.61e-36 | FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_ebfd416796db3159660f54b6cd678d34 | p6@C8orf47 |
| 5.61e-36 | FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_ebfd416796db3159660f54b6cd678d34 | p6@C8orf47 |
| 2.8e-35 | FFCP PHASE2:Hg19::chr4:77356957..77356973,+#_617b1757d542d35b41ba2a9497a43e3b | p20@SHROOM3 |
| 2.8e-35 | FFCP PHASE1:Hg19::chr4:77356957..77356973,+#_617b1757d542d35b41ba2a9497a43e3b | p20@SHROOM3 |
| 4.14e-34 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_af1d88d2c55cf84e07a21fe996483cfe | p10@NLGN1 |
| 4.14e-34 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_af1d88d2c55cf84e07a21fe996483cfe | p10@NLGN1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:30716539..30716546,+#_370dda81bbfbfae820e7a65bb4460137 | p@chr19:30716539..30716546, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:30716539..30716546,+#_370dda81bbfbfae820e7a65bb4460137 | p@chr19:30716539..30716546, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:63196015..63196016,+#_370dda81bbfbfae820e7a65bb4460137 | p@chr2:63196015..63196016, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:63196015..63196016,+#_370dda81bbfbfae820e7a65bb4460137 | p@chr2:63196015..63196016, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:218579326..218579337,+#_f14ec1df048dbc1014c0512269ab7c71 | p@chr1:218579326..218579337, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr1:218579326..218579337,+#_f14ec1df048dbc1014c0512269ab7c71 | p@chr1:218579326..218579337, + |
| 6.72e-34 | FFCP PHASE2:Hg19::chr3:110846331..110846333,+#_411aa77b16368154ec7e7e160e255758 | p@chr3:110846331..110846333, + |
| 6.72e-34 | FFCP PHASE1:Hg19::chr3:110846331..110846333,+#_411aa77b16368154ec7e7e160e255758 | p@chr3:110846331..110846333, + |
| 7.07e-34 | FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_d1e0536379d2a4432575fadfac94a6b7 | p3@BC033145 |
| 7.07e-34 | FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_d1e0536379d2a4432575fadfac94a6b7 | p3@BC033145 |
| 7.51e-34 | FFCP PHASE2:Hg19::chr2:237677787..237677800,+#_d52e08b8e6c9dd98a724ef379d0911ac | p@chr2:237677787..237677800, + |
| 7.51e-34 | FFCP PHASE1:Hg19::chr2:237677787..237677800,+#_d52e08b8e6c9dd98a724ef379d0911ac | p@chr2:237677787..237677800, + |
| 8.35e-34 | FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_e6b5d2bdb399333d2b362c2a8fe15a78 | p1@MIR184 |
| 8.35e-34 | FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_e6b5d2bdb399333d2b362c2a8fe15a78 | p1@MIR184 |
| 9.39e-34 | FFCP PHASE2:Hg19::chr11:89224826..89224839,-#_1e113d66710a878d1b3ce71ec9847fb1 | p14@NOX4 |
| 9.39e-34 | FFCP PHASE1:Hg19::chr11:89224826..89224839,-#_1e113d66710a878d1b3ce71ec9847fb1 | p14@NOX4 |
| 9.87e-34 | FFCP PHASE2:Hg19::chr3:50191610..50191612,-#_1f0e9ac9846f811744178a8c4f720d66 | p@chr3:50191610..50191612, - |
| 9.87e-34 | FFCP PHASE1:Hg19::chr3:50191610..50191612,-#_1f0e9ac9846f811744178a8c4f720d66 | p@chr3:50191610..50191612, - |
| 1.17e-33 | FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_ef90e69f967631b0902ae73eb087f73f | p@chr1:12416343..12416350, + |
| 1.17e-33 | FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_ef90e69f967631b0902ae73eb087f73f | p@chr1:12416343..12416350, + |
| 1.17e-33 | FFCP PHASE1:Hg19::chrX:106142727..106142730,-#_ef90e69f967631b0902ae73eb087f73f | p@chrX:106142727..106142730, - |
| 1.17e-33 | FFCP PHASE2:Hg19::chr3:139258648..139258667,+#_ef90e69f967631b0902ae73eb087f73f | p1@ENST00000381790 |
| 1.17e-33 | FFCP PHASE2:Hg19::chrX:106142727..106142730,-#_ef90e69f967631b0902ae73eb087f73f | p@chrX:106142727..106142730, - |
| 1.17e-33 | FFCP PHASE1:Hg19::chr3:139258648..139258667,+#_ef90e69f967631b0902ae73eb087f73f | p1@ENST00000381790 |
| 3.98e-33 | FFCP PHASE2:Hg19::chr11:31816236..31816261,-#_a8a96ecd16fa931fcd6f1358d43c4582 | p@chr11:31816236..31816261, - |
| 3.98e-33 | FFCP PHASE1:Hg19::chr11:31816236..31816261,-#_a8a96ecd16fa931fcd6f1358d43c4582 | p@chr11:31816236..31816261, - |
| 9.74e-32 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_42634f5103a465986492b55a70209ff8 | p10@SIX3 |
| 9.74e-32 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_42634f5103a465986492b55a70209ff8 | p10@SIX3 |
| 1.14e-31 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_52d2f06bbf50ad22cfd0ea4be28c9524 | p2@SIX6 |
| 1.14e-31 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_52d2f06bbf50ad22cfd0ea4be28c9524 | p2@SIX6 |
