UBERON:0003100: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:XAO_0003005-ZFA_0000303 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Gonochoristic organism that can produce female gametes." [CARO:0000028] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=UBERON:0003101 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003100 | |||
|is_a=UBERON:0000468 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=female organism | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=vertebrate_core | ||
| | |synonym="female" RELATED [TAO:0000303];;"female human body" NARROW SENSU [FMA:67812] | ||
|union_of= | |||
|xref=AAO:0010030;;BILA:0000028;;CARO:0000028;;FBbt:00007011;;FMA:67812;;HAO:0000028;;TAO:0000303;;TGMA:0001839;;XAO:0003005;;ZFA:0000303 | |||
}} | }} | ||
Latest revision as of 17:37, 12 September 2014
| Name: | female organism | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Gonochoristic organism that can produce female gametes." [CARO:0000028] | |
| Xrefs: |
| |
| Synonyms: |
"female" RELATED [TAO:0000303] "female human body" NARROW SENSU [FMA:67812] | |
| Alt_id: | UBERON:XAO_0003005-ZFA_0000303 | |
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000468(multi-cellular organism) |
|---|---|
| disjoint_from: | UBERON:0003101(male organism) |
Children
| part of: | UBERON:0000474 (female reproductive system),UBERON:0003134 (female reproductive organ),UBERON:0014404 (female anatomical structure) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10091-102C1
- 10100-102D1 (uterus, adult, pool1)
- 10204-103F6 (vagina, adult)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
... further results Mouse (Mus musculus)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10091-102C1
- 10100-102D1 (uterus, adult, pool1)
- 10204-103F6 (vagina, adult)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003100 (female organism), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
