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{{UBERON
{{UBERON
|id=UBERON:0003914
|alt_id=
|name=epithelial tube
|namespace=
|def="Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790]
|xref=AEO:0000114;;EHDAA2:0003114;;FBbt:00007474
|is_a=UBERON:0000025;;UBERON:0000483
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003914
|is_a=UBERON:0000025 ;;UBERON:0000483
|is_obsolete=
|located_in=
|located_in=
|name=epithelial tube
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AEO:0000114;;EHDAA2:0003114;;FBbt:00007474
}}
}}

Latest revision as of 17:42, 12 September 2014

Name:epithelial tube
Namespace:FANTOM
Definition:"Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790]
Xrefs:
links:

AEO:0000114
EHDAA2:0003114

FBbt:00007474

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000025(tube),UBERON:0000483(epithelium)



Children

is a:UBERON:0000083 (mesonephric tubule),UBERON:0001049 (neural tube),UBERON:0003915 (endothelial tube),UBERON:0004141 (heart tube),UBERON:0004912 (biliary bud),UBERON:0007499 (epithelial sac),UBERON:0007500 (epithelial tube open at both ends),UBERON:0007684 (uriniferous tubule),UBERON:0009201 (nephric duct),UBERON:0009773 (renal tubule),UBERON:0010532 (primitive nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003914 (epithelial tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.79e-70FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_1976c6b1ae3e3e0d17ce9f9d689a048ep2@SOX17
9.79e-70FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_1976c6b1ae3e3e0d17ce9f9d689a048ep2@SOX17
1.08e-52FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_aae32a98d14b6bbdcc9cdb3201ba4728p@chr12:96830430..96830450, +
1.08e-52FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_aae32a98d14b6bbdcc9cdb3201ba4728p@chr12:96830430..96830450, +
1.37e-49FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_de273e7a8c73330f663856e8d12f79c9p4@SULT1B1
1.37e-49FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_de273e7a8c73330f663856e8d12f79c9p4@SULT1B1
4.97e-48FFCP PHASE2:Mm9::chr12:29308215..29308236,-#_c0a49a7dd4e27ff06221ed27a0159c8ap4@Colec11
4.97e-48FFCP PHASE1:Mm9::chr12:29308215..29308236,-#_c0a49a7dd4e27ff06221ed27a0159c8ap4@Colec11
4.44e-46FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_21e1160ddaee103f6a0d340e5d22518ap1@ENST00000439823
4.44e-46FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_21e1160ddaee103f6a0d340e5d22518ap1@ENST00000439823
1.41e-45FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_d8dbdbc4e14a300152cd00cf8f913f94p@chr3:30334038..30334060, +
1.41e-45FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_d8dbdbc4e14a300152cd00cf8f913f94p@chr3:30334038..30334060, +
4.41e-45FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_4a30bf7067acb38c30b17e1dd8a61e76p3@SULT1B1
4.41e-45FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_4a30bf7067acb38c30b17e1dd8a61e76p3@SULT1B1
1.09e-44FFCP PHASE2:Hg19::chr22:50553000..50553012,+#_8cc1936b5cd053a01f3c3fc42b7575bfp2@MOV10L1
1.09e-44FFCP PHASE1:Hg19::chr22:50553000..50553012,+#_8cc1936b5cd053a01f3c3fc42b7575bfp2@MOV10L1
9.77e-44FFCP PHASE2:Hg19::chr2:109271481..109271493,+#_17fb7141e4c9f0090a46691d7a35aaa9p6@LIMS1
9.77e-44FFCP PHASE1:Hg19::chr2:109271481..109271493,+#_17fb7141e4c9f0090a46691d7a35aaa9p6@LIMS1
1.78e-43FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_0da19eabcf0e33e9bf2b1d6ec66ccbf8p6@HHIP
1.78e-43FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_0da19eabcf0e33e9bf2b1d6ec66ccbf8p6@HHIP
6.53e-43FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_f63927cd842b0b370b87f7a7d954ecccp@chr11:128562673..128562716, -
6.53e-43FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_f63927cd842b0b370b87f7a7d954ecccp@chr11:128562673..128562716, -
1.02e-42FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_ed446576180bc67a01489350568dd721p10@ECE1
1.02e-42FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_ed446576180bc67a01489350568dd721p10@ECE1
2.23e-42FFCP PHASE2:Hg19::chr16:3115299..3115312,+#_125f94af072e3fb89b297c826383f870p5@IL32
2.23e-42FFCP PHASE1:Hg19::chr16:3115299..3115312,+#_125f94af072e3fb89b297c826383f870p5@IL32
4.37e-42FFCP PHASE2:Mm9::chr12:29308178..29308194,-#_b4784fca80c7183d08b1bfababea28f3p2@Colec11
4.37e-42FFCP PHASE1:Mm9::chr12:29308178..29308194,-#_b4784fca80c7183d08b1bfababea28f3p2@Colec11
6.19e-42FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_b8e3b085f40894186b63f54248124a79p@chr22:21138343..21138378, +
6.19e-42FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_b8e3b085f40894186b63f54248124a79p@chr22:21138343..21138378, +
1.5e-40FFCP PHASE2:Hg19::chr8:55370487..55370503,+#_13740cf525504425d6de4b656ca2f129p1@SOX17
1.5e-40FFCP PHASE1:Hg19::chr8:55370487..55370503,+#_13740cf525504425d6de4b656ca2f129p1@SOX17
1.7e-40FFCP PHASE2:Mm9::chr12:29308147..29308161,-#_fd2dc363bbd37c87b34a72aeb89b001bp1@Colec11
1.7e-40FFCP PHASE1:Mm9::chr12:29308147..29308161,-#_fd2dc363bbd37c87b34a72aeb89b001bp1@Colec11
2.54e-40FFCP PHASE1:Mm9::chr12:29308237..29308259,-#_7db6c8337511a33583aff802309eaf5dp3@Colec11
2.54e-40FFCP PHASE2:Mm9::chr12:29308237..29308259,-#_7db6c8337511a33583aff802309eaf5dp3@Colec11
3.97e-40FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_09f6481be00b0c43c1575d002d225ef4p4@HHIP
3.97e-40FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_09f6481be00b0c43c1575d002d225ef4p4@HHIP
6.38e-40FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_996041e8679d6b6e60995a5bde82d194p5@HHIP
6.38e-40FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_996041e8679d6b6e60995a5bde82d194p5@HHIP
1.71e-39FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_e038df5ae2ef07c7126203e41aa2340fp10@HHIP
1.71e-39FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_e038df5ae2ef07c7126203e41aa2340fp10@HHIP
8.82e-39FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_d2a8134f853d99530994ee2242c9b02cp8@HHIP
8.82e-39FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_d2a8134f853d99530994ee2242c9b02cp8@HHIP
9.53e-38FFCP PHASE2:Hg19::chr9:140172310..140172321,+#_edb04c9b8e25945c3c09a2e73e0763f9p4@C9orf167
9.53e-38FFCP PHASE1:Hg19::chr9:140172310..140172321,+#_edb04c9b8e25945c3c09a2e73e0763f9p4@C9orf167
1.66e-37FFCP PHASE2:Hg19::chr20:36793649..36793659,-#_cef92bac408837c6623443883e5d72bcp2@TGM2
1.66e-37FFCP PHASE1:Hg19::chr20:36793649..36793659,-#_cef92bac408837c6623443883e5d72bcp2@TGM2
1.7e-37FFCP PHASE1:Hg19::chr5:141060389..141060439,-#_b37fd78c0b513822d2f2a83f75392dc8p3@ARAP3
1.7e-37FFCP PHASE2:Hg19::chr5:141060389..141060439,-#_b37fd78c0b513822d2f2a83f75392dc8p3@ARAP3
2.65e-37FFCP PHASE2:Hg19::chr1:21606132..21606156,-#_5a13c1f11a604de7a5d80f95658cd6d1p9@ECE1
2.65e-37FFCP PHASE1:Hg19::chr1:21606132..21606156,-#_5a13c1f11a604de7a5d80f95658cd6d1p9@ECE1
4.85e-37FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_bbc3a8122d1af3291c08872918d0689cp2@ESM1
4.85e-37FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_bbc3a8122d1af3291c08872918d0689cp2@ESM1
5.04e-37FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_b2023c8d298fee9650bf9dea8777ba55p24@WWTR1
5.04e-37FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_b2023c8d298fee9650bf9dea8777ba55p24@WWTR1
7.31e-37FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_c12a75ded1bcb85291f2c606e2eed032p2@RHOJ
7.31e-37FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_c12a75ded1bcb85291f2c606e2eed032p2@RHOJ
1.08e-36FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_2f8da64615069469ee719bcbc0f2eb05p4@S100A16
1.08e-36FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_2f8da64615069469ee719bcbc0f2eb05p4@S100A16
1.96e-36FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_1682f415210a7b39e1e51e37441a48a7p@chr11:86649508..86649546, -
1.96e-36FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_1682f415210a7b39e1e51e37441a48a7p@chr11:86649508..86649546, -
2.31e-36FFCP PHASE1:Hg19::chr6:153019023..153019043,+#_27acff20429c79e552cece31e19668a6p2@MYCT1
2.31e-36FFCP PHASE2:Hg19::chr6:153019023..153019043,+#_27acff20429c79e552cece31e19668a6p2@MYCT1
3.32e-36FFCP PHASE2:Hg19::chr7:93551017..93551029,+#_6881dfe572980326df2f9a829e3ca55ep7@GNG11
3.32e-36FFCP PHASE1:Hg19::chr7:93551017..93551029,+#_6881dfe572980326df2f9a829e3ca55ep7@GNG11
3.53e-36FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_8ea19c4b1442e8ba2c4087c9512591c7p@chr22:21138313..21138336, +
3.53e-36FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_8ea19c4b1442e8ba2c4087c9512591c7p@chr22:21138313..21138336, +
4.83e-36FFCP PHASE1:Mm9::chr14:63989446..63989459,+#_692e3ed80c0563f34329c07778ae579cp@chr14:63989446..63989459, +
4.83e-36FFCP PHASE2:Mm9::chr14:63989446..63989459,+#_692e3ed80c0563f34329c07778ae579cp@chr14:63989446..63989459, +
8.11e-36FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_fed52e7845d0725665b49a16e2f2853ep4@ESM1
8.11e-36FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_fed52e7845d0725665b49a16e2f2853ep4@ESM1
8.77e-36FFCP PHASE2:Hg19::chr20:36793663..36793735,-#_ec2503678ac3d3956b9f3ef99f67ba97p1@TGM2
8.77e-36FFCP PHASE1:Hg19::chr20:36793663..36793735,-#_ec2503678ac3d3956b9f3ef99f67ba97p1@TGM2
9.74e-36FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_58c73d33db0d6874d2beb7f6a8bf7441p4@MMP1
9.74e-36FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_58c73d33db0d6874d2beb7f6a8bf7441p4@MMP1
1.25e-35FFCP PHASE2:Hg19::chr7:100771879..100771926,-#_c89247b789c8448939b132fdab011743p@chr7:100771879..100771926, -
1.25e-35FFCP PHASE1:Hg19::chr7:100771879..100771926,-#_c89247b789c8448939b132fdab011743p@chr7:100771879..100771926, -
2.08e-35FFCP PHASE2:Mm9::chr13:30437397..30437427,+#_5278a283befb1e6f89cd76c043c03d8ep@chr13:30437397..30437427, +
2.08e-35FFCP PHASE1:Mm9::chr13:30437397..30437427,+#_5278a283befb1e6f89cd76c043c03d8ep@chr13:30437397..30437427, +
2.57e-35FFCP PHASE2:Hg19::chr7:100771725..100771774,+#_5f06cb1e0eed6d29a666c7b904ed9ca6p7@SERPINE1
2.57e-35FFCP PHASE1:Hg19::chr7:100771725..100771774,+#_5f06cb1e0eed6d29a666c7b904ed9ca6p7@SERPINE1
2.76e-35FFCP PHASE1:Hg19::chr18:47088419..47088437,+#_cfd4c8f557c23d3bf5bdf38e93be232dp1@LIPG
2.76e-35FFCP PHASE2:Hg19::chr18:47088419..47088437,+#_cfd4c8f557c23d3bf5bdf38e93be232dp1@LIPG
3.8e-35FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_f27b2241979949f42b6202130bfe0bdep@chr11:102667477..102667490, -
3.8e-35FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_f27b2241979949f42b6202130bfe0bdep@chr11:102667477..102667490, -
4.82e-35FFCP PHASE2:Mm9::chr6:87378980..87378994,+#_ee6ac9b42be5ee075534aa13481c2f2ep1@Bmp10
4.82e-35FFCP PHASE1:Mm9::chr6:87378980..87378994,+#_ee6ac9b42be5ee075534aa13481c2f2ep1@Bmp10
5.87e-35FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_024a8fdfe88a798e3f311c9ae7befc8ep7@HHIP
5.87e-35FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_024a8fdfe88a798e3f311c9ae7befc8ep7@HHIP
9.97e-35FFCP PHASE1:Hg19::chr6:112575917..112575931,-#_7e3783a1e2e5081cd8c57ae14d3cf565p4@LAMA4
9.97e-35FFCP PHASE2:Hg19::chr6:112575917..112575931,-#_7e3783a1e2e5081cd8c57ae14d3cf565p4@LAMA4
1.43e-34FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_60eb5e321f7a9746ff34a33ae8dbb55dp@chr4:7846444..7846449, -
1.43e-34FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_60eb5e321f7a9746ff34a33ae8dbb55dp@chr4:7846444..7846449, -
1.7e-34FFCP PHASE2:Hg19::chr1:21671968..21672009,-#_c5850ed7a5b34493e03cffdb26d8e6eep1@ECE1
1.7e-34FFCP PHASE1:Hg19::chr1:21671968..21672009,-#_c5850ed7a5b34493e03cffdb26d8e6eep1@ECE1
2.16e-34FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_69432ad4aa5dfd3cd854750ef8f78ac1p@chr11:128563283..128563297, -
2.16e-34FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_69432ad4aa5dfd3cd854750ef8f78ac1p@chr11:128563283..128563297, -
2.21e-34FFCP PHASE1:Hg19::chr7:100773780..100773795,+#_04224f19202e051c73f4998142814861p@chr7:100773780..100773795, +
2.21e-34FFCP PHASE2:Hg19::chr7:100773780..100773795,+#_04224f19202e051c73f4998142814861p@chr7:100773780..100773795, +

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