UBERON:0004637: Difference between revisions
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|name=otic capsule | |name=otic capsule | ||
|namespace= | |namespace= | ||
|def="The | |def="The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500] | ||
|xref=AAO:0010143 | |xref=AAO:0010143;;SCTID:361515007;;VHOG:0000854 | ||
|is_a=UBERON: | |is_a=UBERON:0000020;;UBERON:0004120;;UBERON:0004121;;UBERON:0004765;;UBERON:0010314 | ||
|synonym="otic capsule" EXACT [ZFA:0001500];;" | |synonym="auditory capsule" RELATED [VHOG:0000854];;"otic capsule" EXACT [ZFA:0001500];;"periotic" RELATED [];;"periotic capsule" RELATED [VHOG:0000854] | ||
|comment= | |comment=Taxon notes: developmental relationships need to be checked | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0010351 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of=UBERON:0001694;;UBERON:0001703;;UBERON:0001846 | |part_of=UBERON:0001694;;UBERON:0001703;;UBERON:0001846 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Latest revision as of 13:36, 27 June 2012
| Name: | otic capsule | ||
|---|---|---|---|
| Definition: | "The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500 | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory capsule" RELATED [VHOG:0000854] "otic capsule" EXACT [ZFA:0001500] "periotic" RELATED [] "periotic capsule" RELATED [VHOG:0000854] | ||
| Comments: | Taxon notes: developmental relationships need to be checked |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| develops_from: | UBERON:0010351(otic capsule cartilage condensation) |
| part_of: | UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear) |
Children
| part of: | UBERON:0010113 (future membranous labyrinth) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_ef0848008da7a18a37873e78b0320066 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ef0848008da7a18a37873e78b0320066 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_ef0848008da7a18a37873e78b0320066 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_ef0848008da7a18a37873e78b0320066 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_ef0848008da7a18a37873e78b0320066 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_ef0848008da7a18a37873e78b0320066 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_ef0848008da7a18a37873e78b0320066 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_ef0848008da7a18a37873e78b0320066 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ef0848008da7a18a37873e78b0320066 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_ef0848008da7a18a37873e78b0320066 | p@chr8:13414266..13414279, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066 | p3@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_ef0848008da7a18a37873e78b0320066 | p1@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_ef0848008da7a18a37873e78b0320066 | p1@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_ef0848008da7a18a37873e78b0320066 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_ef0848008da7a18a37873e78b0320066 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_ef0848008da7a18a37873e78b0320066 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_ef0848008da7a18a37873e78b0320066 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_ef0848008da7a18a37873e78b0320066 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_ef0848008da7a18a37873e78b0320066 | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_ef0848008da7a18a37873e78b0320066 | p2@Espnl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_ef0848008da7a18a37873e78b0320066 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_ef0848008da7a18a37873e78b0320066 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_ef0848008da7a18a37873e78b0320066 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_ef0848008da7a18a37873e78b0320066 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_ef0848008da7a18a37873e78b0320066 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_ef0848008da7a18a37873e78b0320066 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ef0848008da7a18a37873e78b0320066 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_ef0848008da7a18a37873e78b0320066 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_ef0848008da7a18a37873e78b0320066 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_ef0848008da7a18a37873e78b0320066 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_ef0848008da7a18a37873e78b0320066 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_ef0848008da7a18a37873e78b0320066 | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_ef0848008da7a18a37873e78b0320066 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_ef0848008da7a18a37873e78b0320066 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_ef0848008da7a18a37873e78b0320066 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066 | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:13508046..13508055, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_ef0848008da7a18a37873e78b0320066 | p1@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_ef0848008da7a18a37873e78b0320066 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066 | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_ef0848008da7a18a37873e78b0320066 | p1@Otog |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_ef0848008da7a18a37873e78b0320066 | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_ef0848008da7a18a37873e78b0320066 | p4@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066 | p2@Strc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_ef0848008da7a18a37873e78b0320066 | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_ef0848008da7a18a37873e78b0320066 | p9@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_ef0848008da7a18a37873e78b0320066 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_ef0848008da7a18a37873e78b0320066 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_ef0848008da7a18a37873e78b0320066 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_ef0848008da7a18a37873e78b0320066 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_ef0848008da7a18a37873e78b0320066 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_ef0848008da7a18a37873e78b0320066 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_ef0848008da7a18a37873e78b0320066 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_ef0848008da7a18a37873e78b0320066 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_ef0848008da7a18a37873e78b0320066 | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_ef0848008da7a18a37873e78b0320066 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_ef0848008da7a18a37873e78b0320066 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_ef0848008da7a18a37873e78b0320066 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_ef0848008da7a18a37873e78b0320066 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_ef0848008da7a18a37873e78b0320066 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_ef0848008da7a18a37873e78b0320066 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_ef0848008da7a18a37873e78b0320066 | p6@Jag1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_ef0848008da7a18a37873e78b0320066 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_ef0848008da7a18a37873e78b0320066 | p2@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_ef0848008da7a18a37873e78b0320066 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_ef0848008da7a18a37873e78b0320066 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_ef0848008da7a18a37873e78b0320066 | p@chr6:113251570..113251578, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
