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{{CL
{{CL
|id=CL:0000066
|alt_id=
|name=epithelial cell
|namespace=efo
|def="A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436]
|xref=BTO:0000414;;FBbt:00000124;;FMA:66768;;WBbt:0003672
|is_a=CL:0000063;;CL:0000548;;EFO:0000324
|synonym="epitheliocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000066
|is_a=CL:0000548
|is_obsolete=
|located_in=
|located_in=
|name=epithelial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="epitheliocyte" EXACT []
|union_of=
|xref=BTO:0000414;;FBbt:00000124;;FMA:66768;;WBbt:0003672
}}
}}

Latest revision as of 16:29, 12 September 2014

Name:epithelial cell
Namespace:FANTOM
Definition:"A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436]
Xrefs:
links:

BTO:0000414
FBbt:00000124
FMA:66768

WBbt:0003672
Synonyms: "epitheliocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000548(animal cell)



Children


is a:CL:0000068 (duct epithelial cell),CL:0000075 (columnar/cuboidal epithelial cell),CL:0000076 (squamous epithelial cell),CL:0000079 (stratified epithelial cell),CL:0000082 (epithelial cell of lung),CL:0000083 (epithelial cell of pancreas),CL:0000098 (sensory epithelial cell),CL:0000150 (glandular epithelial cell),CL:0000182 (hepatocyte),CL:0000244 (transitional epithelial cell),CL:0000666 (fenestrated cell),CL:0002076 (endo-epithelial cell),CL:0002077 (ecto-epithelial cell),CL:0002078 (meso-epithelial cell),CL:0002222 (vertebrate lens cell),CL:0002327 (mammary gland epithelial cell),CL:0002518 (kidney epithelial cell),CL:0002535 (epithelial cell of cervix),CL:0002536 (amniotic epithelial cell),CL:0002565 (iris pigment epithelial cell),CL:0002577 (placental epithelial cell),CL:0002586 (retinal pigment epithelial cell),CL:0005012 (multi-ciliated epithelial cell),CL:1000415 (epithelial cell of gall bladder)
derives from:FF:0101120 (epithelial cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000066 (epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.35e-72FFCP PHASE1:Hg19::chr19:38794797..38794810,+#_4e6ded3e4b8c013f62042ce6d2ce9cd9p2@C19orf33
9.35e-72FFCP PHASE2:Hg19::chr19:38794797..38794810,+#_4e6ded3e4b8c013f62042ce6d2ce9cd9p2@C19orf33
4.87e-66FFCP PHASE2:Hg19::chr8:144815966..144815986,-#_f83836debae0e7b7ebf007f003390786p2@FAM83H
4.87e-66FFCP PHASE1:Hg19::chr8:144815966..144815986,-#_f83836debae0e7b7ebf007f003390786p2@FAM83H
4.44e-63FFCP PHASE2:Hg19::chr18:47376197..47376227,-#_dc4b45f9b4ec57d7eb4fab164cf0b487p2@MYO5B
4.44e-63FFCP PHASE1:Hg19::chr18:47376197..47376227,-#_dc4b45f9b4ec57d7eb4fab164cf0b487p2@MYO5B
1.05e-60FFCP PHASE2:Hg19::chr16:1728305..1728324,+#_74b15a328f47dc368f25c08e2f1c3c49p2@HN1L
1.05e-60FFCP PHASE1:Hg19::chr16:1728305..1728324,+#_74b15a328f47dc368f25c08e2f1c3c49p2@HN1L
3.33e-60FFCP PHASE1:Hg19::chr1:16482527..16482546,-#_e7ce4805f8483365662978052fc79562p2@EPHA2
3.33e-60FFCP PHASE2:Hg19::chr1:16482527..16482546,-#_e7ce4805f8483365662978052fc79562p2@EPHA2
4.95e-60FFCP PHASE2:Hg19::chr5:68710906..68710983,+#_4e73b16520adb091f3f9b5082146e1dap1@MARVELD2
4.95e-60FFCP PHASE1:Hg19::chr5:68710906..68710983,+#_4e73b16520adb091f3f9b5082146e1dap1@MARVELD2
2.28e-59FFCP PHASE2:Hg19::chr19:751122..751139,+#_00f5700f51d5ceb473819ba12963104ap1@C19orf21
2.28e-59FFCP PHASE1:Hg19::chr19:751122..751139,+#_00f5700f51d5ceb473819ba12963104ap1@C19orf21
2.41e-59FFCP PHASE1:Hg19::chr1:955448..955508,+#_f7e49d9a54ef1ee7c8f3a36df7ac1f38p1@AGRN
2.41e-59FFCP PHASE2:Hg19::chr1:955448..955508,+#_f7e49d9a54ef1ee7c8f3a36df7ac1f38p1@AGRN
4.14e-59FFCP PHASE2:Hg19::chr2:54784868..54784919,+#_4110e6a44f834cee3fa1eebd3a573e6cp@chr2:54784868..54784919, +
4.14e-59FFCP PHASE1:Hg19::chr2:54784868..54784919,+#_4110e6a44f834cee3fa1eebd3a573e6cp@chr2:54784868..54784919, +
5.64e-59FFCP PHASE1:Hg19::chr16:1728272..1728296,+#_a5b6da62e334961a74c477a19e2caf41p1@HN1L
5.64e-59FFCP PHASE2:Hg19::chr16:1728272..1728296,+#_a5b6da62e334961a74c477a19e2caf41p1@HN1L
8.84e-59FFCP PHASE2:Hg19::chr1:6479968..6479986,-#_a6404775c6d50314120b1a0a5763fbbbp1@HES2
8.84e-59FFCP PHASE1:Hg19::chr1:6479968..6479986,-#_a6404775c6d50314120b1a0a5763fbbbp1@HES2
1.35e-58FFCP PHASE1:Hg19::chr8:144815914..144815961,-#_73048bb8d734464ea87b06a8e9634759p1@FAM83H
1.35e-58FFCP PHASE2:Hg19::chr8:144815914..144815961,-#_73048bb8d734464ea87b06a8e9634759p1@FAM83H
7.96e-58FFCP PHASE2:Hg19::chr19:38794829..38794901,+#_06b08002f08f08022dd1a8b6e431a813p1@C19orf33
7.96e-58FFCP PHASE1:Hg19::chr19:38794829..38794901,+#_06b08002f08f08022dd1a8b6e431a813p1@C19orf33
1.93e-57FFCP PHASE2:Hg19::chr12:53342893..53342911,+#_9d5ed3da7726713689c80eaedd8755c3p1@KRT18
1.93e-57FFCP PHASE1:Hg19::chr12:53342893..53342911,+#_9d5ed3da7726713689c80eaedd8755c3p1@KRT18
2.5e-57FFCP PHASE1:Hg19::chr19:751104..751121,+#_fed9af0b99d62ccef444e3e477d3d4e5p2@C19orf21
2.5e-57FFCP PHASE2:Hg19::chr19:751104..751121,+#_fed9af0b99d62ccef444e3e477d3d4e5p2@C19orf21
7.82e-57FFCP PHASE2:Hg19::chr1:33207381..33207471,+#_5ebb019dbab99ea949bee3bbee1a5ec6p2@KIAA1522
7.82e-57FFCP PHASE1:Hg19::chr1:33207381..33207471,+#_5ebb019dbab99ea949bee3bbee1a5ec6p2@KIAA1522
2.03e-56FFCP PHASE2:Hg19::chr12:52585791..52585806,-#_5d8af02eb9168b9229b01a55ccfe8bfap1@KRT80
2.03e-56FFCP PHASE1:Hg19::chr12:52585791..52585806,-#_5d8af02eb9168b9229b01a55ccfe8bfap1@KRT80
3.8e-56FFCP PHASE1:Hg19::chr16:68679173..68679184,+#_571d22303402803a8bfe213bddbdd143p2@CDH3
3.8e-56FFCP PHASE2:Hg19::chr16:68679173..68679184,+#_571d22303402803a8bfe213bddbdd143p2@CDH3
6.8e-56FFCP PHASE2:Hg19::chr1:27189631..27189648,+#_15e3f6478c0a0ba6bbf09b166c648cfcp1@SFN
6.8e-56FFCP PHASE1:Hg19::chr1:27189631..27189648,+#_15e3f6478c0a0ba6bbf09b166c648cfcp1@SFN
4.25e-55FFCP PHASE2:Hg19::chr1:16482554..16482576,-#_f19e11100e6b67c090b23d5fe794835ep1@EPHA2
4.25e-55FFCP PHASE1:Hg19::chr1:16482554..16482576,-#_f19e11100e6b67c090b23d5fe794835ep1@EPHA2
8.93e-55FFCP PHASE2:Hg19::chr20:361391..361410,+#_172728af2ffe8c28d7538ebdfe75f627p2@TRIB3
8.93e-55FFCP PHASE1:Hg19::chr20:361391..361410,+#_172728af2ffe8c28d7538ebdfe75f627p2@TRIB3
1.64e-54FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_abcc8ae8933ba1d17edb068a2b1e6fabp2@SEPT9
1.64e-54FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_abcc8ae8933ba1d17edb068a2b1e6fabp2@SEPT9
1.98e-54FFCP PHASE1:Hg19::chr1:160990954..160990973,-#_d22b9db85cc1532e7e147e735726a8cap3@F11R
1.98e-54FFCP PHASE2:Hg19::chr1:160990954..160990973,-#_d22b9db85cc1532e7e147e735726a8cap3@F11R
4.24e-54FFCP PHASE2:Hg19::chr1:35246775..35246797,+#_0c616103451b23e4c413429ac475fca8p2@GJB3
4.24e-54FFCP PHASE1:Hg19::chr1:35246775..35246797,+#_0c616103451b23e4c413429ac475fca8p2@GJB3
6.39e-54FFCP PHASE2:Hg19::chr17:4843943..4843963,+#_4fa268db98f5d95cd346020b4f24f14dp3@RNF167
6.39e-54FFCP PHASE1:Hg19::chr17:4843943..4843963,+#_4fa268db98f5d95cd346020b4f24f14dp3@RNF167
6.87e-53FFCP PHASE2:Hg19::chr22:46933332..46933398,-#_acf4a0d8829870c459678f576af67392p2@CELSR1
6.87e-53FFCP PHASE1:Hg19::chr22:46933332..46933398,-#_acf4a0d8829870c459678f576af67392p2@CELSR1
1.17e-52FFCP PHASE1:Hg19::chr8:128306960..128306989,-#_2e95e2340481ef1667d0d6609a637973p@chr8:128306960..128306989, -
1.17e-52FFCP PHASE2:Hg19::chr8:128306960..128306989,-#_2e95e2340481ef1667d0d6609a637973p@chr8:128306960..128306989, -
1.44e-52FFCP PHASE2:Hg19::chr6:10415484..10415508,-#_35c3a3d69e404541ba946347202ca20cp3@TFAP2A
1.44e-52FFCP PHASE1:Hg19::chr6:10415484..10415508,-#_35c3a3d69e404541ba946347202ca20cp3@TFAP2A
1.83e-52FFCP PHASE1:Hg19::chr6:30851840..30851902,+#_43b6c92e80b2926decba16128bfb76ffp4@DDR1
1.83e-52FFCP PHASE2:Hg19::chr6:30851840..30851902,+#_43b6c92e80b2926decba16128bfb76ffp4@DDR1
1.91e-52FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_4fd23d3cd57f536dcaa7935143b5e55dp2@CHMP4C
1.91e-52FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_4fd23d3cd57f536dcaa7935143b5e55dp2@CHMP4C
2.25e-52FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_feb260772e480adecc88c62581caa3a0p1@ESRP2
2.25e-52FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_feb260772e480adecc88c62581caa3a0p1@ESRP2
2.38e-52FFCP PHASE2:Hg19::chr12:80084737..80084763,-#_c8823ca06fb3afb6a78f7ff1c83c5280p3@PAWR
2.38e-52FFCP PHASE1:Hg19::chr12:80084737..80084763,-#_c8823ca06fb3afb6a78f7ff1c83c5280p3@PAWR
2.82e-52FFCP PHASE2:Hg19::chr8:144815895..144815912,-#_5a8bb3f8ba5d599d34f9cf46a64adfc5p4@FAM83H
2.82e-52FFCP PHASE1:Hg19::chr8:144815895..144815912,-#_5a8bb3f8ba5d599d34f9cf46a64adfc5p4@FAM83H
7.56e-52FFCP PHASE2:Hg19::chr1:35246802..35246823,+#_e72a66c2d677709ab550f4364c5bbd56p1@GJB3
7.56e-52FFCP PHASE1:Hg19::chr1:35246802..35246823,+#_e72a66c2d677709ab550f4364c5bbd56p1@GJB3
1.08e-51FFCP PHASE2:Mm9::chr2:167904248..167904260,+#_8de8dcfb47d691695b68213348e7fa79p@chr2:167904248..167904260, +
1.08e-51FFCP PHASE1:Mm9::chr2:167904248..167904260,+#_8de8dcfb47d691695b68213348e7fa79p@chr2:167904248..167904260, +
1.74e-51FFCP PHASE1:Hg19::chr1:24127235..24127253,-#_817e2cf411579a70db262b48bbf5ccf9p1@GALE
1.74e-51FFCP PHASE2:Hg19::chr1:24127235..24127253,-#_817e2cf411579a70db262b48bbf5ccf9p1@GALE
1.86e-51FFCP PHASE1:Hg19::chr22:46933490..46933535,-#_dbf285db2aab3509ca0d0121fb02a303p1@CELSR1
1.86e-51FFCP PHASE2:Hg19::chr22:46933490..46933535,-#_dbf285db2aab3509ca0d0121fb02a303p1@CELSR1
3.79e-51FFCP PHASE2:Hg19::chr12:80084768..80084821,-#_f66a966d45e1d6af3d4590650b9ecfd4p2@PAWR
3.79e-51FFCP PHASE1:Hg19::chr12:80084768..80084821,-#_f66a966d45e1d6af3d4590650b9ecfd4p2@PAWR
4.19e-51FFCP PHASE1:Hg19::chr20:361506..361517,+#_0b2a8b1767d510df5e783a2e111849a9p4@TRIB3
4.19e-51FFCP PHASE2:Hg19::chr20:361506..361517,+#_0b2a8b1767d510df5e783a2e111849a9p4@TRIB3
5.4e-51FFCP PHASE1:Hg19::chr20:361478..361491,+#_33e97809d9d37928168333b59edae118p5@TRIB3
5.4e-51FFCP PHASE2:Hg19::chr20:361478..361491,+#_33e97809d9d37928168333b59edae118p5@TRIB3
1.19e-50FFCP PHASE2:Hg19::chr19:36001122..36001196,-#_71a0a005cca29b5f8be320369e9f15f5p6@DMKN
1.19e-50FFCP PHASE1:Hg19::chr19:36001122..36001196,-#_71a0a005cca29b5f8be320369e9f15f5p6@DMKN
1.51e-50FFCP PHASE1:Hg19::chr2:27975692..27975750,+#_839437b0b3fb1e1c6f8f3362256ca26ap@chr2:27975692..27975750, +
1.51e-50FFCP PHASE2:Hg19::chr2:27975692..27975750,+#_839437b0b3fb1e1c6f8f3362256ca26ap@chr2:27975692..27975750, +
1.65e-50FFCP PHASE1:Hg19::chr11:394196..394258,+#_133f9c5e398af2f1aca7b3970779cf88p1@PKP3
1.65e-50FFCP PHASE2:Hg19::chr11:394196..394258,+#_133f9c5e398af2f1aca7b3970779cf88p1@PKP3
3.48e-50FFCP PHASE2:Hg19::chr20:60942361..60942376,-#_04d452389a9c0b823e811ee1032e8b88p1@LAMA5
3.48e-50FFCP PHASE1:Hg19::chr20:60942361..60942376,-#_04d452389a9c0b823e811ee1032e8b88p1@LAMA5
6.26e-50FFCP PHASE2:Hg19::chr22:46373034..46373058,-#_38b347a05b4a556862e4a685284c2b75p1@WNT7B
6.26e-50FFCP PHASE1:Hg19::chr22:46373034..46373058,-#_38b347a05b4a556862e4a685284c2b75p1@WNT7B
6.63e-50FFCP PHASE1:Hg19::chr17:7284402..7284414,+#_746f33edee2f8da7c136242ceab2b471p1@TNK1
6.63e-50FFCP PHASE2:Hg19::chr17:7284402..7284414,+#_746f33edee2f8da7c136242ceab2b471p1@TNK1
7.47e-50FFCP PHASE1:Hg19::chr14:23451753..23451767,-#_f0c1f61c4d3122e2ece0dde3fd121526p2@AJUBA
7.47e-50FFCP PHASE2:Hg19::chr14:23451753..23451767,-#_f0c1f61c4d3122e2ece0dde3fd121526p2@AJUBA
2.33e-49FFCP PHASE1:Hg19::chr1:155100387..155100398,+#_831482b15b8501e52ef771614c7aea1cp3@EFNA1
2.33e-49FFCP PHASE2:Hg19::chr1:155100387..155100398,+#_831482b15b8501e52ef771614c7aea1cp3@EFNA1
2.38e-49FFCP PHASE2:Hg19::chr14:71275492..71275543,+#_6138d1897235c219007784e52bb71305p@chr14:71275492..71275543, +
2.38e-49FFCP PHASE1:Hg19::chr14:71275492..71275543,+#_6138d1897235c219007784e52bb71305p@chr14:71275492..71275543, +
2.92e-49FFCP PHASE2:Hg19::chr4:79472888..79472970,+#_346bbbafc54aa15c3e5e532706499401p1@ANXA3
2.92e-49FFCP PHASE1:Hg19::chr4:79472888..79472970,+#_346bbbafc54aa15c3e5e532706499401p1@ANXA3

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