Personal tools

CL:1000507: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:1000507
|alt_id=
|name=kidney tubule cell
|namespace=cell
|def=
|xref=KUPO:0001020
|is_a=CL:1000497
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000507
|is_a=CL:1000497
|is_obsolete=
|located_in=
|located_in=
|name=kidney tubule cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001231
|part_of=UBERON:0001231
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=KUPO:0001020
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:kidney tubule cell
Namespace:FANTOM
Xrefs:
links:
KUPO:0001020


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:1000497(kidney cell)
part_of:UBERON:0001231(nephron tubule)



Children


is a:CL:1000494 (nephron tubule epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000507 (kidney tubule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.6e-125FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_5d919f9c0c956e9af1f3595614482dfdp4@MEGF11
3.6e-125FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_5d919f9c0c956e9af1f3595614482dfdp4@MEGF11
4.27e-99FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_b0fec9e65f665abb6fbc2e739809906cp@chr1:1100457..1100470, +
4.27e-99FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_b0fec9e65f665abb6fbc2e739809906cp@chr1:1100457..1100470, +
6.34e-89FFCP PHASE2:Hg19::chr2:693380..693398,+#_ae0e71e7228ae7bd8c61940420541cb3p@chr2:693380..693398, +
6.34e-89FFCP PHASE1:Hg19::chr2:693380..693398,+#_ae0e71e7228ae7bd8c61940420541cb3p@chr2:693380..693398, +
6.95e-79FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_9f60afaaf4aa9555f29e3dfab971eba6p1@ENST00000418041, p1@ENST00000443104
6.95e-79FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_9f60afaaf4aa9555f29e3dfab971eba6p1@ENST00000418041, p1@ENST00000443104
1.14e-78FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_757e54cb66526a522c650fda8a9dd376p7@HOXA10
1.14e-78FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_757e54cb66526a522c650fda8a9dd376p7@HOXA10
2.82e-76FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_89ca192ce92140796298d7ac452e72e2p@chr7:7606139..7606151, -
2.82e-76FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_89ca192ce92140796298d7ac452e72e2p@chr7:7606139..7606151, -
2.46e-75FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_6c1dc9065d0eb9a852c26903f4f57fc1p3@PAX2
2.46e-75FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_6c1dc9065d0eb9a852c26903f4f57fc1p3@PAX2
2.88e-75FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_449e375e91425d63fcd53749ff6a5c53p@chr18:3456189..3456200, +
2.88e-75FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_449e375e91425d63fcd53749ff6a5c53p@chr18:3456189..3456200, +
1.48e-74FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_060772d3d24e16d6a471b83de96285b6p2@B3GALT5
1.48e-74FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_060772d3d24e16d6a471b83de96285b6p2@B3GALT5
2.7e-74FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_ae3e0b5b6a35cc332f4ad235227b3402p@chr7:140227349..140227360, -
2.7e-74FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_ae3e0b5b6a35cc332f4ad235227b3402p@chr7:140227349..140227360, -
5.32e-74FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_835b5e46207e5dfb50e87b9a62b81f98p4@PAX2
5.32e-74FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_835b5e46207e5dfb50e87b9a62b81f98p4@PAX2
5.85e-74FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d83f93a8cdac6ef48ba6ca8ed8bee7e5p4@AIF1L
5.85e-74FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d83f93a8cdac6ef48ba6ca8ed8bee7e5p4@AIF1L
1.31e-72FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_dc21497229244c12bda84aed3c3f02a1p6@LRRN4
1.31e-72FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_dc21497229244c12bda84aed3c3f02a1p6@LRRN4
1.88e-70FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_6b149fce1852efac12cdcb487d012410p2@AB527789
1.88e-70FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_6b149fce1852efac12cdcb487d012410p2@AB527789
1.06e-64FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_d166b869ad6ad889fe184a47be35f980p2@CLDN6
1.06e-64FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_d166b869ad6ad889fe184a47be35f980p2@CLDN6
2.76e-64FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_49d69fcabc749fc02e2660895d4156e3p@chr7:98453821..98453843, -
2.76e-64FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_49d69fcabc749fc02e2660895d4156e3p@chr7:98453821..98453843, -
1.24e-63FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_08c248a2c2f45b92629b7572ad51b4b7p@chr16:86604624..86604648, +
1.24e-63FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_08c248a2c2f45b92629b7572ad51b4b7p@chr16:86604624..86604648, +
4.48e-60FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_a71755e8f4679cda86110dd41dc70c8cp3@AIF1L
4.48e-60FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_a71755e8f4679cda86110dd41dc70c8cp3@AIF1L
1.1e-59FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_0a3e84dc3655d12a965a1f140ef7c31fp2@PLA2G2F
1.1e-59FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_0a3e84dc3655d12a965a1f140ef7c31fp2@PLA2G2F
2.05e-59FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_242255cdfc896344b9930c51679eeab7p6@GALNT14
2.05e-59FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_242255cdfc896344b9930c51679eeab7p6@GALNT14
8.36e-59FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_aa2ae09833e83fe6e8d35338fb26dcecp4@AB527789
8.36e-59FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_aa2ae09833e83fe6e8d35338fb26dcecp4@AB527789
7.62e-57FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_b75016060dbd2828d002130a448566cep16@HOXA10
7.62e-57FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_b75016060dbd2828d002130a448566cep16@HOXA10
1.32e-55FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_066529dbd28ce713c714ef2b7fc8b1a9p@chr21:46826248..46826282, -
1.32e-55FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_066529dbd28ce713c714ef2b7fc8b1a9p@chr21:46826248..46826282, -
6.62e-55FFCP PHASE1:Hg19::chr2:693362..693373,+#_d9e865ed101b28ff55530a9be3d6835ep@chr2:693362..693373, +
6.62e-55FFCP PHASE2:Hg19::chr2:693362..693373,+#_d9e865ed101b28ff55530a9be3d6835ep@chr2:693362..693373, +
1.99e-53FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_1bf2c71a48f9e4aa8440cf2127da790bp3@HNF1B
1.99e-53FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_1bf2c71a48f9e4aa8440cf2127da790bp3@HNF1B
7.76e-53FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_2cda2cb0f8c442f89272b23b5e9a0377p2@PAX2
7.76e-53FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_2cda2cb0f8c442f89272b23b5e9a0377p2@PAX2
2.69e-52FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_ee49b048bb228663e2219d74f4490810p16@TJP2
2.69e-52FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_ee49b048bb228663e2219d74f4490810p16@TJP2
1.51e-50FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_74fad57fd10f5962865eb0d7fa3f020cp2@C14orf105
1.51e-50FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_74fad57fd10f5962865eb0d7fa3f020cp2@C14orf105
2.93e-50FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_bb1694b85ac71257248847793df264f0p1@CLDN16
2.93e-50FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_bb1694b85ac71257248847793df264f0p1@CLDN16
4.36e-50FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_349fcd165037ac7262d2bfe06ccb88f9p@chr5:74244100..74244117, +
4.36e-50FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_349fcd165037ac7262d2bfe06ccb88f9p@chr5:74244100..74244117, +
4.9e-49FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_bea46b9d325cd02a4579d44a36a9152dp@chr7:140227303..140227330, -
4.9e-49FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_bea46b9d325cd02a4579d44a36a9152dp@chr7:140227303..140227330, -
3.7e-48FFCP PHASE2:Hg19::chr7:7606153..7606181,-#_2dc691f1cf6af47173627265eb4ec949p@chr7:7606153..7606181, -
3.7e-48FFCP PHASE1:Hg19::chr7:7606153..7606181,-#_2dc691f1cf6af47173627265eb4ec949p@chr7:7606153..7606181, -
8.06e-47FFCP PHASE1:Hg19::chr17:35293932..35293947,-#_250f5a0f578d2805b286fbf297c5c74bp2@ENST00000529264
8.06e-47FFCP PHASE2:Hg19::chr17:35293932..35293947,-#_250f5a0f578d2805b286fbf297c5c74bp2@ENST00000529264
8.19e-47FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_820aaf3ef44124c874c5cf8d368e7825p4@DCDC2
8.19e-47FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_820aaf3ef44124c874c5cf8d368e7825p4@DCDC2
1.44e-46FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_79b7865a1c31196b339222eda641086fp1@HOXD4
1.44e-46FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_79b7865a1c31196b339222eda641086fp1@HOXD4
3.39e-46FFCP PHASE2:Hg19::chr7:27219849..27219867,-#_b16338c761396823760e1387c1f4ffd8p6@HOXA10
3.39e-46FFCP PHASE1:Hg19::chr7:27219849..27219867,-#_b16338c761396823760e1387c1f4ffd8p6@HOXA10
5.96e-46FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_682c0530bf43a0dae8a66fd7856022cep3@LRRN4
5.96e-46FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_682c0530bf43a0dae8a66fd7856022cep3@LRRN4
1.77e-45FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_f6fd8703624b153862fad236876c70abp@chr2:165603346..165603357, -
1.77e-45FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_f6fd8703624b153862fad236876c70abp@chr2:165603346..165603357, -
5.1e-45FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_dc8e11703c2459e021b42938a952c1a4p4@VARS2
5.1e-45FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_dc8e11703c2459e021b42938a952c1a4p4@VARS2
5.13e-45FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_9aca43c377bd907f18f5bbd9b448939dp7@AIF1L
5.13e-45FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_9aca43c377bd907f18f5bbd9b448939dp7@AIF1L
5.16e-45FFCP PHASE2:Hg19::chr20:62327738..62327751,+#_5782369138015f03ae98d021c54b970ap2@TNFRSF6B
5.16e-45FFCP PHASE1:Hg19::chr20:62327738..62327751,+#_5782369138015f03ae98d021c54b970ap2@TNFRSF6B
6.97e-45FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_b789f121c15f9e1213429f8cdff7daedp@chr9:112260040..112260045, +
6.97e-45FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_b789f121c15f9e1213429f8cdff7daedp@chr9:112260040..112260045, +
7.39e-45FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_0c2e033224c1df7f3ccd32af5c3a0cebp@chr20:6034241..6034256, -
7.39e-45FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_0c2e033224c1df7f3ccd32af5c3a0cebp@chr20:6034241..6034256, -
1.28e-44FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_e4bebd9fd768aba8caba9d3486c0c344p6@PAX2
1.28e-44FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_e4bebd9fd768aba8caba9d3486c0c344p6@PAX2
1.67e-44FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_4a4dbc29d090c65d832c736e173d65a2p@chr9:119741711..119741743, -
1.67e-44FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_4a4dbc29d090c65d832c736e173d65a2p@chr9:119741711..119741743, -
4.94e-44FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_c99e6fec9f78cbe2a71c567b0366ac47p1@ENST00000523364, p1@uc010kux.1
4.94e-44FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_c99e6fec9f78cbe2a71c567b0366ac47p1@ENST00000523364, p1@uc010kux.1
9.32e-44FFCP PHASE1:Hg19::chr11:117688216..117688234,-#_10ec82a66f366689933c6d9bc72cf799p2@DSCAML1
9.32e-44FFCP PHASE2:Hg19::chr11:117688216..117688234,-#_10ec82a66f366689933c6d9bc72cf799p2@DSCAML1
1.2e-43FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_530c85305dd797b0e10fc61932970ef3p2@PDZK1IP1
1.2e-43FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_530c85305dd797b0e10fc61932970ef3p2@PDZK1IP1
1.45e-43FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_26a1022c4b36ecc402b7b934c108cc90p7@FXYD2
1.45e-43FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_26a1022c4b36ecc402b7b934c108cc90p7@FXYD2
5.15e-43FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_1814f2578cf3184810063da8b55f4e62p1@ENST00000444849
5.15e-43FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_1814f2578cf3184810063da8b55f4e62p1@ENST00000444849

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:1000507&oldid=3275586"