UBERON:0000477: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:CARO_0000041-FMA_49443-ZFA_0001478 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Anatomical group that has its parts adjacent to one another." [CARO:MAH] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000477 | |||
|is_a=UBERON:0000480 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=anatomical cluster | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=disjointness_axiom_removed;;upper_level | ||
| | |synonym= | ||
|union_of= | |||
|xref=AAO:0010009;;AEO:0000041;;BILA:0000041;;CARO:0000041;;EHDAA2:0003041;;FBbt:00007277;;FMA:49443;;HAO:0000041;;TADS:0000605;;TAO:0001478;;TGMA:0001842;;VHOG:0001737;;XAO:0003160;;ZFA:0001478 | |||
}} | }} | ||
Latest revision as of 17:09, 12 September 2014
| Name: | anatomical cluster | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical group that has its parts adjacent to one another." [CARO:MAH] | ||
| Xrefs: |
| ||
| Alt_id: | UBERON:CARO_0000041-FMA_49443-ZFA_0001478 | ||
| Subset: |
disjointness_axiom_removed upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000480(anatomical group) |
|---|
Children
| is a: | UBERON:0000170 (pair of lungs),UBERON:0000349 (limbic system),UBERON:0001353 (anal region),UBERON:0001556 (lower urinary tract),UBERON:0001737 (larynx),UBERON:0001839 (bony labyrinth),UBERON:0001844 (cochlea),UBERON:0001846 (internal ear),UBERON:0002049 (vasculature),UBERON:0002275 (reticular formation),UBERON:0002303 (juxtaglomerular apparatus),UBERON:0002465 (lymphoid system),UBERON:0002680 (regional part of metencephalon),UBERON:0003112 (olfactory region),UBERON:0003672 (dentition),UBERON:0004088 (ocular region),UBERON:0004111 (anatomical conduit),UBERON:0004288 (skeleton),UBERON:0004770 (articular system),UBERON:0004905 (articulation),UBERON:0005162 (multi cell component structure),UBERON:0005352 (spermatic cord),UBERON:0006558 (lymphatic part of lymphoid system),UBERON:0008814 (pharyngeal arch system),UBERON:0009142 (entire embryonic mesenchyme),UBERON:0009664 (gut mesentery),UBERON:0009751 (cardiac mesenchyme),UBERON:0009899 (pole of cerebral hemisphere),UBERON:0010743 (meningeal cluster),UBERON:0011143 (upper urinary tract),UBERON:0011216 (organ system subdivision),UBERON:0011595 (jaw region),UBERON:0011932 (pilosebaceous unit),UBERON:0012361 (internal anal region),UBERON:0012469 (external anal region),UBERON:0015238 (pineal complex),UBERON:0015827 (brainstem reticular formation) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000477 (anatomical cluster), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
