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{{UBERON
{{UBERON
|id=UBERON:0002513
|alt_id=UBERON:MA_0002836-ZFA_0001591
|name=endochondral bone
|namespace=
|def="Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_ossification]
|xref=AAO:0010776;;AEO:0000083;;BTO:0002157;;EHDAA2:0003083;;http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg;;TAO:0001591;;VSAO:0000145;;XAO:0004018;;ZFA:0001591
|is_a=UBERON:0001474;;UBERON:0010363
|synonym="cartilaginous bone" RELATED [BTO:0002157]
|comment=note that some structures, e.g. in ZFA are both intramembrane and endochondral. Editor notes: placement in this class to be inferred
|comment=note that some structures, e.g. in ZFA are both intramembrane and endochondral. Editor notes: placement in this class to be inferred
|alt_id=UBERON:MA_0002836-ZFA_0001591
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_ossification]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005863;;UBERON:0007844
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002513
|is_a=UBERON:0001474 ;;UBERON:0010363
|is_obsolete=
|located_in=
|located_in=
|name=endochondral bone
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Replacement bone that forms within cartilage.[AAO]" xsd:string;;UBPROP:0000001 "Replacement bone that forms within cartilage.[TAO]" xsd:string;;UBPROP:0000001 "Replacement bone that forms within cartilage.[VSAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Replacement bone that forms within cartilage.[AAO]" xsd:string;;UBPROP:0000001 "Replacement bone that forms within cartilage.[TAO]" xsd:string;;UBPROP:0000001 "Replacement bone that forms within cartilage.[VSAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="cartilaginous bone" RELATED [BTO:0002157]
|union_of=
|xref=AAO:0010776;;AEO:0000083;;BTO:0002157;;EHDAA2:0003083;;http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg;;TAO:0001591;;VSAO:0000145;;XAO:0004018;;ZFA:0001591
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:endochondral bone
Namespace:FANTOM
Definition:"Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_ossification]
Xrefs:
links:

AAO:0010776
AEO:0000083
BTO:0002157
EHDAA2:0003083
[1]
TAO:0001591
VSAO:0000145
XAO:0004018

ZFA:0001591
Synonyms: "cartilaginous bone" RELATED [BTO:0002157]
Comments:note that some structures, e.g. in ZFA are both intramembrane and endochondral. Editor notes: placement in this class to be inferred
Alt_id: UBERON:MA_0002836-ZFA_0001591
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element),UBERON:0010363(endochondral element)
develops_from:UBERON:0005863(cartilaginous condensation),UBERON:0007844(cartilage element)



Children

is a:UBERON:0002412 (vertebra),UBERON:0002428 (limb bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002513 (endochondral bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_f93f91d7345d16a0da86757b0b6334cbp26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_f93f91d7345d16a0da86757b0b6334cbp26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_b4c6c3df0f56f623580e1e4ed57cce47p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_b4c6c3df0f56f623580e1e4ed57cce47p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_b4c6c3df0f56f623580e1e4ed57cce47p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_b4c6c3df0f56f623580e1e4ed57cce47p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_b4c6c3df0f56f623580e1e4ed57cce47p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_b4c6c3df0f56f623580e1e4ed57cce47p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_701d66c1356aba504662ab9605468be3p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_701d66c1356aba504662ab9605468be3p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_df79a1622c5191ee8dd2a0a3c7e1b47bp@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_df79a1622c5191ee8dd2a0a3c7e1b47bp@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_b368309d9908e2c4a906b175a9877bb1p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_b368309d9908e2c4a906b175a9877bb1p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_b368309d9908e2c4a906b175a9877bb1p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_b368309d9908e2c4a906b175a9877bb1p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_b368309d9908e2c4a906b175a9877bb1p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_b368309d9908e2c4a906b175a9877bb1p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_b368309d9908e2c4a906b175a9877bb1p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_b368309d9908e2c4a906b175a9877bb1p@chr16:24096441..24096449, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_75d54654d4c168920b4ac06cf0eb45ecp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_75d54654d4c168920b4ac06cf0eb45ecp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_afa034c70fa4d5a9766aadac056d787ep@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_afa034c70fa4d5a9766aadac056d787ep@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_4d99952ae5a61ac15ad07c36110adcabp3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_4d99952ae5a61ac15ad07c36110adcabp3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_ef13dfde4b634d40f298aa24cd6374fep@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_ef13dfde4b634d40f298aa24cd6374fep@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_ce18ac7acee80a005a19942aa97cb1e1p5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_ce18ac7acee80a005a19942aa97cb1e1p5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_c149f6f267e431648b38cb28270d8415p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_c149f6f267e431648b38cb28270d8415p2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_586fc35e35b09be25ebd5b43328fc367p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_586fc35e35b09be25ebd5b43328fc367p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_279c72482721b2a5e8d27a2bcab3ad97p2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_279c72482721b2a5e8d27a2bcab3ad97p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_279c72482721b2a5e8d27a2bcab3ad97p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_279c72482721b2a5e8d27a2bcab3ad97p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_13945683a5a2460c181757bb0878a2e2p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_13945683a5a2460c181757bb0878a2e2p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_13945683a5a2460c181757bb0878a2e2p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_13945683a5a2460c181757bb0878a2e2p4@Lipc
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_b0277c028c0229c4a882f2d3c2c67364p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_b0277c028c0229c4a882f2d3c2c67364p6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_8c6c33231a405a3f8dc210958d5588f6p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_8c6c33231a405a3f8dc210958d5588f6p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_8c6c33231a405a3f8dc210958d5588f6p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_8c6c33231a405a3f8dc210958d5588f6p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_1e082a1fd9465fa1ee769a1272f12074p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_1e082a1fd9465fa1ee769a1272f12074p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_b31dd029bfc75362df2624528d5d0aeep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_b31dd029bfc75362df2624528d5d0aeep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_b31dd029bfc75362df2624528d5d0aeep@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_b31dd029bfc75362df2624528d5d0aeep@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_f8d4c278fc3eb6b784222d4ef7079d5bp@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_f8d4c278fc3eb6b784222d4ef7079d5bp@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_f047413b3e81d144b8b738936bf41e77p2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_f047413b3e81d144b8b738936bf41e77p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_8e0ebfb3f7789fac255d6bcc748edafcp2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_8e0ebfb3f7789fac255d6bcc748edafcp2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_123d1ddda89f8c28788ede7d3d29eef0p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_123d1ddda89f8c28788ede7d3d29eef0p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_16eb028f96faa219760505baa946ca45p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_16eb028f96faa219760505baa946ca45p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_16eb028f96faa219760505baa946ca45p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_16eb028f96faa219760505baa946ca45p@chr11:67056544..67056589, -
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_92a2588774fe437475f1a7ba4ad22a85p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_92a2588774fe437475f1a7ba4ad22a85p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_92a2588774fe437475f1a7ba4ad22a85p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_92a2588774fe437475f1a7ba4ad22a85p@chrY:2858251..2858257, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_49bf9859c76fbacd91754191dd298cc0p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_49bf9859c76fbacd91754191dd298cc0p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_7375fc6e720e0530282ef79be22d41f9p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_7375fc6e720e0530282ef79be22d41f9p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_fa981f2b7bb96f75c8bcf9a6d648844dp@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_fa981f2b7bb96f75c8bcf9a6d648844dp@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_cec68a25b8dcc36e329a627524cf1554p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_cec68a25b8dcc36e329a627524cf1554p1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_fecc71f073e59576bbee3e293f8d65dep6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_fecc71f073e59576bbee3e293f8d65dep6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_488fb8000e9c9b309fd79c51d57279e3p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_488fb8000e9c9b309fd79c51d57279e3p7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_8902fb09bb60da3548c30029cf104d36p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_8902fb09bb60da3548c30029cf104d36p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_8902fb09bb60da3548c30029cf104d36p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_8902fb09bb60da3548c30029cf104d36p@chr7:133592162..133592188, -
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_15e5553ecb13020abfb0b9f31eca853fp4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_15e5553ecb13020abfb0b9f31eca853fp4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_abee73d3e4faedb1478c04d281cc82e1p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_abee73d3e4faedb1478c04d281cc82e1p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_c3bcb94c9808b6afd62d93bfc3a1ceb2p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_c3bcb94c9808b6afd62d93bfc3a1ceb2p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_c3bcb94c9808b6afd62d93bfc3a1ceb2p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_c3bcb94c9808b6afd62d93bfc3a1ceb2p2@Tm4sf19
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_eb8d55927803e3d07ff74df67a5991acp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_eb8d55927803e3d07ff74df67a5991acp5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_eb8d55927803e3d07ff74df67a5991acp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_eb8d55927803e3d07ff74df67a5991acp@chr15:97806574..97806585, -
1.36e-25FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_d45e42dbe01aa116aef2e4bb4c05443bp2@Siglec15
1.36e-25FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_d45e42dbe01aa116aef2e4bb4c05443bp@chr2:180890942..180890956, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Replacement bone that forms within cartilage.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Replacement bone that forms within cartilage.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Replacement bone that forms within cartilage.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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