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{{UBERON
{{UBERON
|id=UBERON:0004141
|alt_id=
|name=heart tube
|namespace=
|def="Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143, ZFA:0000360]
|xref=EFO:0003526;;EHDAA:424;;EMAPA:16208;;TAO:0000360;;XAO:0000337;;ZFA:0000360
|is_a=UBERON:0003914;;UBERON:0004120;;UBERON:0005291
|synonym="early primitive heart tube" EXACT [EMAPA:16208];;"embryonic heart tube" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143, ZFA:0000360]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005498
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004141
|is_a=UBERON:0003914 ;;UBERON:0005291 ;;UBERON:0012275
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=heart tube
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="early primitive heart tube" EXACT [EMAPA:16208];;"embryonic heart tube" RELATED []
|union_of=
|xref=EFO:0003526;;EHDAA:424;;EMAPA:16208;;TAO:0000360;;XAO:0000337;;ZFA:0000360
}}
}}

Latest revision as of 17:44, 12 September 2014

Name:heart tube
Namespace:FANTOM
Definition:"Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143, ZFA:0000360]
Xrefs:
links:

EFO:0003526
EHDAA:424
EMAPA:16208
TAO:0000360
XAO:0000337

ZFA:0000360
Synonyms: "early primitive heart tube" EXACT [EMAPA:16208]
"embryonic heart tube" RELATED []
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0005291(embryonic tissue),UBERON:0012275(meso-epithelium)
develops_from:UBERON:0005498(primitive heart tube)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0000948 (heart)
part of:UBERON:0006283 (future cardiac ventricle),UBERON:0010226 (future cardiac ventricle),UBERON:0010227 (future cardiac atrium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004141 (heart tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_dbbfb5dc1ff2364b7bef8466b67e5940p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_dbbfb5dc1ff2364b7bef8466b67e5940p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_dbbfb5dc1ff2364b7bef8466b67e5940p@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_dbbfb5dc1ff2364b7bef8466b67e5940p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_dbbfb5dc1ff2364b7bef8466b67e5940p@chr9:24549775..24549776, -
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_dbbfb5dc1ff2364b7bef8466b67e5940p@chr1:137747392..137747402, -
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_0ed58d421a7e999844aaae24104db453p@chr4:140980456..140980463, +
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_0ed58d421a7e999844aaae24104db453p@chr4:140980456..140980463, +
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_97a439514a9abe67ba2b3e26e17ca91ap@chr12:113728951..113728965, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_97a439514a9abe67ba2b3e26e17ca91ap@chr12:113728951..113728965, +
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_97a439514a9abe67ba2b3e26e17ca91ap@chr1:137737483..137737497, -
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_97a439514a9abe67ba2b3e26e17ca91ap@chr1:137737483..137737497, -
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_54213787fcc7dfd9e16b44c839e9b02dp@chr4:147375200..147375220, +
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_54213787fcc7dfd9e16b44c839e9b02dp@chr4:147375200..147375220, +
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_54213787fcc7dfd9e16b44c839e9b02dp@chr19:36187511..36187515, -
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_54213787fcc7dfd9e16b44c839e9b02dp@chr19:36187511..36187515, -
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_0730087416efc6b69ab7253f0e46f896p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_0730087416efc6b69ab7253f0e46f896p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_0730087416efc6b69ab7253f0e46f896p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_0730087416efc6b69ab7253f0e46f896p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_0730087416efc6b69ab7253f0e46f896p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_0730087416efc6b69ab7253f0e46f896p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_0730087416efc6b69ab7253f0e46f896p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_0730087416efc6b69ab7253f0e46f896p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_0730087416efc6b69ab7253f0e46f896p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_0730087416efc6b69ab7253f0e46f896p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_0730087416efc6b69ab7253f0e46f896p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_0730087416efc6b69ab7253f0e46f896p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_0730087416efc6b69ab7253f0e46f896p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_0730087416efc6b69ab7253f0e46f896p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_0730087416efc6b69ab7253f0e46f896p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_0730087416efc6b69ab7253f0e46f896p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_0730087416efc6b69ab7253f0e46f896p@chr11:65461897..65461929, -
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_4980640629e6c0053194f3fd8ee5478bp@chr1:137742152..137742184, -
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_4980640629e6c0053194f3fd8ee5478bp@chr1:137742152..137742184, -
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_a4f0d8369881e49125f1a4077cd95b86p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_a4f0d8369881e49125f1a4077cd95b86p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_a4f0d8369881e49125f1a4077cd95b86p2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_a4f0d8369881e49125f1a4077cd95b86p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_a4f0d8369881e49125f1a4077cd95b86p@chr1:137742470..137742481, +
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_a4f0d8369881e49125f1a4077cd95b86p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_a4f0d8369881e49125f1a4077cd95b86p2@Tnni3
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_a4f0d8369881e49125f1a4077cd95b86p@chr1:137742470..137742481, +
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_517e31eced63a604e0fc14c5560e37fcp@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_517e31eced63a604e0fc14c5560e37fcp5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_517e31eced63a604e0fc14c5560e37fcp11@Arhgap31
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_517e31eced63a604e0fc14c5560e37fcp5@Nebl
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_517e31eced63a604e0fc14c5560e37fcp@chr5:58108164..58108178, +
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_517e31eced63a604e0fc14c5560e37fcp1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_517e31eced63a604e0fc14c5560e37fcp1@ENSMUST00000154140
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_517e31eced63a604e0fc14c5560e37fcp@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_517e31eced63a604e0fc14c5560e37fcp@chr19:36193739..36193752, -
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_517e31eced63a604e0fc14c5560e37fcp11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_517e31eced63a604e0fc14c5560e37fcp@chr10:53062244..53062249, +
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_517e31eced63a604e0fc14c5560e37fcp@chr5:58108164..58108178, +
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_b97e80d204b9b9e898d44b7eb3d4dcc4p@chr9:24529233..24529237, -
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_b97e80d204b9b9e898d44b7eb3d4dcc4p@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_476e24a6d897a0098bb5ab1f18c741fbp6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_476e24a6d897a0098bb5ab1f18c741fbp6@Usp20

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