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{{UBERON
{{UBERON
|id=UBERON:0004340
|alt_id=
|name=allantois
|namespace=
|def="Allantois (plural allantoides or allantoises) is a part of a developing animal conceptus (which consists of all embryonic and extra-embryonic tissues). It helps the embryo exchange gases and handle liquid waste. The allantois, along with the amnion and chorion (other embryonic membranes), identify humans as amniotes, along with reptiles, dinosaurs, birds, and other mammals. Of the vertebrates, only Ichthyopsidas lack this structure. [WP,unvetted]." [MP:0001726, Wikipedia:Allantois]
|xref=BTO:0000474;;EHDAA2:0000113;;EMAPA:16084;;EMAPA:16107;;EMAPA:28547;;http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png;;MESH:A.16.254.403.147;;ncithesaurus:Allantois;;RETIRED_EHDAA2:0000114;;SCTID:308825007;;VHOG:0000738
|is_a=UBERON:0000077;;UBERON:0005631;;UBERON:0006554
|synonym=
|comment=a diverticulum of the hindgut endoderm [ISBN10:0073040584 "Vertebrates, Kardong"]
|comment=a diverticulum of the hindgut endoderm [ISBN10:0073040584 "Vertebrates, Kardong"]
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Allantois (plural allantoides or allantoises) is a part of a developing animal conceptus (which consists of all embryonic and extra-embryonic tissues). It helps the embryo exchange gases and handle liquid waste. The allantois, along with the amnion and chorion (other embryonic membranes), identify humans as amniotes, along with reptiles, dinosaurs, birds, and other mammals. Of the vertebrates, only Ichthyopsidas lack this structure. [WP,unvetted]." [MP:0001726, Wikipedia:Allantois]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0000925;;UBERON:0001040;;UBERON:0004872
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004340
|is_a=UBERON:0000077 ;;UBERON:0005631
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=allantois
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001008
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0000474;;EHDAA2:0000113;;EMAPA:16084;;EMAPA:16107;;EMAPA:28547;;http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png;;MESH:A.16.254.403.147;;ncithesaurus:Allantois;;RETIRED_EHDAA2:0000114;;SCTID:308825007;;VHOG:0000738
}}
}}

Latest revision as of 17:45, 12 September 2014

Name:allantois
Namespace:FANTOM
Definition:"Allantois (plural allantoides or allantoises) is a part of a developing animal conceptus (which consists of all embryonic and extra-embryonic tissues). It helps the embryo exchange gases and handle liquid waste. The allantois, along with the amnion and chorion (other embryonic membranes), identify humans as amniotes, along with reptiles, dinosaurs, birds, and other mammals. Of the vertebrates, only Ichthyopsidas lack this structure. [WP,unvetted]." [MP:0001726, Wikipedia:Allantois]
Xrefs:
links:

BTO:0000474
EHDAA2:0000113
EMAPA:16084
EMAPA:16107
EMAPA:28547
[ Gray25.png Gray25.png]
MESH:A.16.254.403.147
ncithesaurus:Allantois
RETIRED_EHDAA2:0000114
SCTID:308825007

VHOG:0000738
Comments:a diverticulum of the hindgut endoderm [ISBN10:0073040584 "Vertebrates, Kardong"]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0005631(extraembryonic membrane)
develops_from:UBERON:0000925(endoderm),UBERON:0001040(yolk sac),UBERON:0004872(splanchnic layer of lateral plate mesoderm)
part_of:UBERON:0001008(renal system)



Children

develops from:UBERON:0001987 (placenta)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004340 (allantois), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.23e-89FFCP PHASE1:Hg19::chr11:1982869..1982890,+#_816894c4c5c6fd96126509a6e80d17bdp@chr11:1982869..1982890, +
4.23e-89FFCP PHASE2:Hg19::chr11:1982869..1982890,+#_816894c4c5c6fd96126509a6e80d17bdp@chr11:1982869..1982890, +
7.73e-89FFCP PHASE1:Hg19::chr5:153858046..153858049,+#_1b459b5971c098717e99a35d979e6039p@chr5:153858046..153858049, +
7.73e-89FFCP PHASE2:Hg19::chr5:153858046..153858049,+#_1b459b5971c098717e99a35d979e6039p@chr5:153858046..153858049, +
1.04e-88FFCP PHASE2:Hg19::chr5:153854787..153854796,-#_2563ba07536b5b63c6d4f5c5ddbf69c6p@chr5:153854787..153854796, -
1.04e-88FFCP PHASE1:Hg19::chr5:153854787..153854796,-#_2563ba07536b5b63c6d4f5c5ddbf69c6p@chr5:153854787..153854796, -
1.41e-88FFCP PHASE1:Hg19::chr1:209704573..209704587,+#_88cbe8b54338bc2a0b9709155d4a6fa4p@chr1:209704573..209704587, +
1.41e-88FFCP PHASE2:Hg19::chr1:209704573..209704587,+#_88cbe8b54338bc2a0b9709155d4a6fa4p@chr1:209704573..209704587, +
1.91e-88FFCP PHASE2:Hg19::chr1:209704648..209704656,+#_23f28e5a2c3825c6cf850382063313dep@chr1:209704648..209704656, +
1.91e-88FFCP PHASE1:Hg19::chr1:209704648..209704656,+#_23f28e5a2c3825c6cf850382063313dep@chr1:209704648..209704656, +
1.87e-86FFCP PHASE1:Mm9::chr13:27440741..27440750,+#_2d849d438885b6fee22ee0ccf504d888p@chr13:27440741..27440750, +
1.87e-86FFCP PHASE2:Mm9::chr13:43250181..43250190,-#_2d849d438885b6fee22ee0ccf504d888p@chr13:43250181..43250190, -
1.87e-86FFCP PHASE1:Mm9::chr7:17788884..17788890,+#_2d849d438885b6fee22ee0ccf504d888p3@Psg29
1.87e-86FFCP PHASE1:Mm9::chr3:89171538..89171544,+#_2d849d438885b6fee22ee0ccf504d888p@chr3:89171538..89171544, +
1.87e-86FFCP PHASE1:Mm9::chr2:4310640..4310648,+#_2d849d438885b6fee22ee0ccf504d888p59@Frmd4a
1.87e-86FFCP PHASE1:Mm9::chr6:121053540..121053548,-#_2d849d438885b6fee22ee0ccf504d888p@chr6:121053540..121053548, -
1.87e-86FFCP PHASE2:Mm9::chr4:140663013..140663022,+#_2d849d438885b6fee22ee0ccf504d888p@chr4:140663013..140663022, +
1.87e-86FFCP PHASE2:Mm9::chr17:8927606..8927607,-#_2d849d438885b6fee22ee0ccf504d888p@chr17:8927606..8927607, -
1.87e-86FFCP PHASE2:Mm9::chr6:97907005..97907011,+#_2d849d438885b6fee22ee0ccf504d888p@chr6:97907005..97907011, +
1.87e-86FFCP PHASE2:Mm9::chr14:55273056..55273059,-#_2d849d438885b6fee22ee0ccf504d888p@chr14:55273056..55273059, -
1.87e-86FFCP PHASE2:Mm9::chr6:121053540..121053548,-#_2d849d438885b6fee22ee0ccf504d888p@chr6:121053540..121053548, -
1.87e-86FFCP PHASE1:Mm9::chr13:61041595..61041607,-#_2d849d438885b6fee22ee0ccf504d888p@chr13:61041595..61041607, -
1.87e-86FFCP PHASE2:Mm9::chr7:17788884..17788890,+#_2d849d438885b6fee22ee0ccf504d888p3@Psg29
1.87e-86FFCP PHASE2:Mm9::chr7:137716644..137716651,-#_2d849d438885b6fee22ee0ccf504d888p5@Nsmce4a
1.87e-86FFCP PHASE1:Mm9::chr17:8927606..8927607,-#_2d849d438885b6fee22ee0ccf504d888p@chr17:8927606..8927607, -
1.87e-86FFCP PHASE2:Mm9::chr13:27734346..27734351,-#_2d849d438885b6fee22ee0ccf504d888p2@Prl7a1
1.87e-86FFCP PHASE2:Mm9::chr13:61041595..61041607,-#_2d849d438885b6fee22ee0ccf504d888p@chr13:61041595..61041607, -
1.87e-86FFCP PHASE2:Mm9::chr13:27335655..27335658,+#_2d849d438885b6fee22ee0ccf504d888p@chr13:27335655..27335658, +
1.87e-86FFCP PHASE1:Mm9::chr7:137716644..137716651,-#_2d849d438885b6fee22ee0ccf504d888p5@Nsmce4a
1.87e-86FFCP PHASE1:Mm9::chr13:27337717..27337754,-#_2d849d438885b6fee22ee0ccf504d888p@chr13:27337717..27337754, -
1.87e-86FFCP PHASE1:Mm9::chr4:140663013..140663022,+#_2d849d438885b6fee22ee0ccf504d888p@chr4:140663013..140663022, +
1.87e-86FFCP PHASE1:Mm9::chr13:43250181..43250190,-#_2d849d438885b6fee22ee0ccf504d888p@chr13:43250181..43250190, -
1.87e-86FFCP PHASE2:Mm9::chr13:27337717..27337754,-#_2d849d438885b6fee22ee0ccf504d888p@chr13:27337717..27337754, -
1.87e-86FFCP PHASE2:Mm9::chr13:27440741..27440750,+#_2d849d438885b6fee22ee0ccf504d888p@chr13:27440741..27440750, +
1.87e-86FFCP PHASE2:Mm9::chr3:89171538..89171544,+#_2d849d438885b6fee22ee0ccf504d888p@chr3:89171538..89171544, +
1.87e-86FFCP PHASE2:Mm9::chr2:4310640..4310648,+#_2d849d438885b6fee22ee0ccf504d888p59@Frmd4a
1.87e-86FFCP PHASE1:Mm9::chr14:69915427..69915460,-#_2d849d438885b6fee22ee0ccf504d888p@chr14:69915427..69915460, -
1.87e-86FFCP PHASE2:Mm9::chr16:92613101..92613124,+#_2d849d438885b6fee22ee0ccf504d888p2@ENSMUST00000148919
1.87e-86FFCP PHASE1:Mm9::chr13:27734346..27734351,-#_2d849d438885b6fee22ee0ccf504d888p2@Prl7a1
1.87e-86FFCP PHASE1:Mm9::chr14:55273056..55273059,-#_2d849d438885b6fee22ee0ccf504d888p@chr14:55273056..55273059, -
1.87e-86FFCP PHASE1:Mm9::chr6:97907005..97907011,+#_2d849d438885b6fee22ee0ccf504d888p@chr6:97907005..97907011, +
1.87e-86FFCP PHASE2:Mm9::chr17:35991777..35991786,+#_2d849d438885b6fee22ee0ccf504d888p@chr17:35991777..35991786, +
1.87e-86FFCP PHASE1:Mm9::chr13:27335655..27335658,+#_2d849d438885b6fee22ee0ccf504d888p@chr13:27335655..27335658, +
1.87e-86FFCP PHASE1:Mm9::chr16:92613101..92613124,+#_2d849d438885b6fee22ee0ccf504d888p2@ENSMUST00000148919
1.87e-86FFCP PHASE1:Mm9::chr17:35991777..35991786,+#_2d849d438885b6fee22ee0ccf504d888p@chr17:35991777..35991786, +
1.87e-86FFCP PHASE2:Mm9::chr14:69915427..69915460,-#_2d849d438885b6fee22ee0ccf504d888p@chr14:69915427..69915460, -
1.21e-74FFCP PHASE1:Hg19::chr20:36794938..36794945,-#_5c0038b884d65212397a2cce4c050397p45@TGM2
1.21e-74FFCP PHASE2:Hg19::chr20:36794938..36794945,-#_5c0038b884d65212397a2cce4c050397p45@TGM2
2.01e-74FFCP PHASE1:Hg19::chr14:24729174..24729183,-#_a57342ad896b42957c670b644bcc6df9p17@TGM1
2.01e-74FFCP PHASE2:Hg19::chr8:22034506..22034518,+#_a57342ad896b42957c670b644bcc6df9p@chr8:22034506..22034518, +
2.01e-74FFCP PHASE2:Hg19::chr14:24729174..24729183,-#_a57342ad896b42957c670b644bcc6df9p17@TGM1
2.01e-74FFCP PHASE1:Hg19::chr8:22034506..22034518,+#_a57342ad896b42957c670b644bcc6df9p@chr8:22034506..22034518, +
3.32e-74FFCP PHASE2:Hg19::chr3:134044856..134044890,+#_c5d0f3b7d366e4f0c3305eae7ca35ac8p@chr3:134044856..134044890, +
3.32e-74FFCP PHASE2:Hg19::chr5:89143573..89143607,-#_c5d0f3b7d366e4f0c3305eae7ca35ac8p@chr5:89143573..89143607, -
3.32e-74FFCP PHASE1:Hg19::chr3:134044856..134044890,+#_c5d0f3b7d366e4f0c3305eae7ca35ac8p@chr3:134044856..134044890, +
3.32e-74FFCP PHASE1:Hg19::chr5:89143573..89143607,-#_c5d0f3b7d366e4f0c3305eae7ca35ac8p@chr5:89143573..89143607, -
4.26e-74FFCP PHASE2:Hg19::chr3:55384353..55384357,+#_d1b3e67df711bfe3db23c3260ab33237p@chr3:55384353..55384357, +
4.26e-74FFCP PHASE1:Hg19::chr3:55384353..55384357,+#_d1b3e67df711bfe3db23c3260ab33237p@chr3:55384353..55384357, +
5.48e-74FFCP PHASE1:Hg19::chr1:209704612..209704625,+#_c5d0131fb1493ef388d4dfc8d7fcfa3fp@chr1:209704612..209704625, +
5.48e-74FFCP PHASE2:Hg19::chr1:209704612..209704625,+#_c5d0131fb1493ef388d4dfc8d7fcfa3fp@chr1:209704612..209704625, +
7.04e-74FFCP PHASE1:Hg19::chr17:37824598..37824605,+#_8f1842016515a0ce01a005f8a0a82a65p15@PNMT
7.04e-74FFCP PHASE2:Hg19::chr17:37824598..37824605,+#_8f1842016515a0ce01a005f8a0a82a65p15@PNMT
4.67e-66FFCP PHASE2:Hg19::chr12:51785088..51785093,-#_a5b8e4b987be50e7c9cded2481f10f2dp12@GALNT6
4.67e-66FFCP PHASE1:Hg19::chr12:51785088..51785093,-#_a5b8e4b987be50e7c9cded2481f10f2dp12@GALNT6
2.61e-64FFCP PHASE1:Hg19::chr14:104202639..104202646,-#_3dee8c5aa7885a0e0bbbca91d875acd0p@chr14:104202639..104202646, -
2.61e-64FFCP PHASE2:Hg19::chr14:104202639..104202646,-#_3dee8c5aa7885a0e0bbbca91d875acd0p@chr14:104202639..104202646, -
3.24e-64FFCP PHASE1:Hg19::chr5:153855055..153855066,-#_c4cea0752ec7d2448319673e44bb2116p@chr5:153855055..153855066, -
3.24e-64FFCP PHASE2:Hg19::chr9:88126069..88126080,-#_c4cea0752ec7d2448319673e44bb2116p@chr9:88126069..88126080, -
3.24e-64FFCP PHASE1:Hg19::chr9:112300690..112300705,-#_c4cea0752ec7d2448319673e44bb2116p@chr9:112300690..112300705, -
3.24e-64FFCP PHASE1:Hg19::chr9:88126069..88126080,-#_c4cea0752ec7d2448319673e44bb2116p@chr9:88126069..88126080, -
3.24e-64FFCP PHASE2:Hg19::chr5:153855055..153855066,-#_c4cea0752ec7d2448319673e44bb2116p@chr5:153855055..153855066, -
3.24e-64FFCP PHASE2:Hg19::chr9:112300690..112300705,-#_c4cea0752ec7d2448319673e44bb2116p@chr9:112300690..112300705, -
4.02e-64FFCP PHASE2:Hg19::chr20:61288222..61288232,+#_cac46286be9b28ba5397a0939a3e90b0p14@SLCO4A1
4.02e-64FFCP PHASE1:Hg19::chr17:37824217..37824226,+#_cac46286be9b28ba5397a0939a3e90b0p12@PNMT
4.02e-64FFCP PHASE2:Hg19::chr17:37824217..37824226,+#_cac46286be9b28ba5397a0939a3e90b0p12@PNMT
4.02e-64FFCP PHASE1:Hg19::chr20:61288222..61288232,+#_cac46286be9b28ba5397a0939a3e90b0p14@SLCO4A1
6.18e-64FFCP PHASE1:Hg19::chr2:25704561..25704572,-#_9c1e761600b7f22da4f262212bd92f70p20@DTNB
6.18e-64FFCP PHASE2:Hg19::chr2:25704561..25704572,-#_9c1e761600b7f22da4f262212bd92f70p20@DTNB
9.51e-64FFCP PHASE2:Hg19::chr5:170239966..170239982,+#_381432ada4b2c412d368d77e34e59d9bp@chr5:170239966..170239982, +
9.51e-64FFCP PHASE1:Hg19::chr5:170239966..170239982,+#_381432ada4b2c412d368d77e34e59d9bp@chr5:170239966..170239982, +
1.46e-63FFCP PHASE2:Hg19::chr10:131344593..131344605,+#_7962de86c6844f18a65a129f51f2421ap@chr10:131344593..131344605, +
1.46e-63FFCP PHASE1:Hg19::chr10:131344593..131344605,+#_7962de86c6844f18a65a129f51f2421ap@chr10:131344593..131344605, +
1.81e-63FFCP PHASE2:Hg19::chr5:170176045..170176055,-#_f3d242c40ac6db860b828286a1a15738p@chr5:170176045..170176055, -
1.81e-63FFCP PHASE1:Hg19::chr5:170176045..170176055,-#_f3d242c40ac6db860b828286a1a15738p@chr5:170176045..170176055, -
5.76e-61FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_ee3c8e30bddeeb846654fefa274b80dep1@ENST00000469806
5.76e-61FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_ee3c8e30bddeeb846654fefa274b80dep1@ENST00000469806
4.28e-60FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_1c9f6929fd79d3447a75dc84687609e1p@chr15:68344995..68345013, +
4.28e-60FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_1c9f6929fd79d3447a75dc84687609e1p@chr15:68344995..68345013, +
1.68e-58FFCP PHASE2:Mm9::chr13:61040767..61040776,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr13:61040767..61040776, -
1.68e-58FFCP PHASE2:Mm9::chr13:27335609..27335622,+#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr13:27335609..27335622, +
1.68e-58FFCP PHASE1:Mm9::chr5:115211954..115211984,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr5:115211954..115211984, -
1.68e-58FFCP PHASE2:Mm9::chr13:61265572..61265576,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp2@Ctsr
1.68e-58FFCP PHASE2:Mm9::chr13:27434787..27434799,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr13:27434787..27434799, -
1.68e-58FFCP PHASE1:Mm9::chrX:131570630..131570638,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp6@ENSMUST00000153610
1.68e-58FFCP PHASE2:Mm9::chr11:55223511..55223524,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr11:55223511..55223524, -
1.68e-58FFCP PHASE1:Mm9::chr13:61040767..61040776,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr13:61040767..61040776, -
1.68e-58FFCP PHASE1:Mm9::chr5:125523411..125523420,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp24@Ncor2
1.68e-58FFCP PHASE2:Mm9::chr7:17788842..17788851,+#_a51e87fa9f6a1c0921bb93ba101c6b9fp2@Psg29
1.68e-58FFCP PHASE1:Mm9::chr15:78324802..78324811,-#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr15:78324802..78324811, -
1.68e-58FFCP PHASE1:Mm9::chr13:33048652..33048685,+#_a51e87fa9f6a1c0921bb93ba101c6b9fp@chr13:33048652..33048685, +

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