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{{UBERON
{{UBERON
|id=UBERON:0007845
|alt_id=
|name=regular connective tissue
|namespace=
|def="Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular collagenous tissue." [FMA:20103]
|xref=FMA:20103
|is_a=UBERON:0002384
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular collagenous tissue." [FMA:20103]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007845
|is_a=UBERON:0002384
|is_obsolete=
|located_in=
|located_in=
|name=regular connective tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:20103
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:regular connective tissue
Namespace:FANTOM
Definition:"Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular collagenous tissue." [FMA:20103]
Xrefs:
links:
FMA:20103

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002384(connective tissue)



Children

is a:UBERON:0007846 (dense regular connective tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007845 (regular connective tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.74e-88FFCP PHASE1:Hg19::chr1:203150041..203150049,-#_06c23221fc65268c7e347037f9dfa5eap@chr1:203150041..203150049, -
9.74e-88FFCP PHASE2:Hg19::chr1:203150041..203150049,-#_06c23221fc65268c7e347037f9dfa5eap@chr1:203150041..203150049, -
2.75e-74FFCP PHASE2:Hg19::chr5:79375755..79375801,+#_b97bb80563c9b3f56cec31a918f02ea0p@chr5:79375755..79375801, +
2.75e-74FFCP PHASE1:Hg19::chr5:79375755..79375801,+#_b97bb80563c9b3f56cec31a918f02ea0p@chr5:79375755..79375801, +
2.39e-66FFCP PHASE1:Hg19::chr7:43016260..43016261,+#_3f64febb10c1105bdbfaad9a7f8d0d8dp@chr7:43016260..43016261, +
2.39e-66FFCP PHASE1:Hg19::chr4:4396380..4396381,-#_3f64febb10c1105bdbfaad9a7f8d0d8dp@chr4:4396380..4396381, -
2.39e-66FFCP PHASE2:Hg19::chr7:43016260..43016261,+#_3f64febb10c1105bdbfaad9a7f8d0d8dp@chr7:43016260..43016261, +
2.39e-66FFCP PHASE2:Hg19::chr11:27541356..27541360,+#_3f64febb10c1105bdbfaad9a7f8d0d8dp@chr11:27541356..27541360, +
2.39e-66FFCP PHASE1:Hg19::chr11:27541356..27541360,+#_3f64febb10c1105bdbfaad9a7f8d0d8dp@chr11:27541356..27541360, +
2.39e-66FFCP PHASE2:Hg19::chr4:4396380..4396381,-#_3f64febb10c1105bdbfaad9a7f8d0d8dp@chr4:4396380..4396381, -
2.4e-66FFCP PHASE2:Hg19::chr1:203150031..203150040,-#_9ac68041f8cafa4a21ca1f4527f9aa41p@chr1:203150031..203150040, -
2.4e-66FFCP PHASE1:Hg19::chr1:203150031..203150040,-#_9ac68041f8cafa4a21ca1f4527f9aa41p@chr1:203150031..203150040, -
2.41e-66FFCP PHASE2:Hg19::chr8:120608233..120608244,-#_18a3cdf0e51d1f11cd2a5761e7863669p@chr8:120608233..120608244, -
2.41e-66FFCP PHASE1:Hg19::chr8:120608233..120608244,-#_18a3cdf0e51d1f11cd2a5761e7863669p@chr8:120608233..120608244, -
1.22e-59FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_08ba7c842f364c6bc8be9b1923d3296cp21@SEMA3C
1.22e-59FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_08ba7c842f364c6bc8be9b1923d3296cp21@SEMA3C
3.13e-54FFCP PHASE1:Hg19::chr8:57353995..57354004,-#_bd629c5d4d64afcd3546a7c89eb4a466p@chr8:57353995..57354004, -
3.13e-54FFCP PHASE2:Hg19::chr8:57353995..57354004,-#_bd629c5d4d64afcd3546a7c89eb4a466p@chr8:57353995..57354004, -
9.77e-45FFCP PHASE2:Hg19::chr6:159660765..159660776,+#_4fce0838bb19101d249995ca33613f31p@chr6:159660765..159660776, +
9.77e-45FFCP PHASE1:Hg19::chr6:159660765..159660776,+#_4fce0838bb19101d249995ca33613f31p@chr6:159660765..159660776, +
6.64e-41FFCP PHASE1:Hg19::chr1:56962127..56962135,-#_f52f370b97b5be8f27e96e5a0fcd6558p@chr1:56962127..56962135, -
6.64e-41FFCP PHASE2:Hg19::chr1:56962127..56962135,-#_f52f370b97b5be8f27e96e5a0fcd6558p@chr1:56962127..56962135, -
2.93e-40FFCP PHASE1:Hg19::chr4:26492048..26492059,-#_d494408d50145450d281dad064d8745dp3@CCKAR
2.93e-40FFCP PHASE2:Hg19::chr4:26492048..26492059,-#_d494408d50145450d281dad064d8745dp3@CCKAR
9.77e-40FFCP PHASE2:Hg19::chr8:57354119..57354137,+#_eb98bd899c42a59d59759de7faeac621p@chr8:57354119..57354137, +
9.77e-40FFCP PHASE1:Hg19::chr8:57354119..57354137,+#_eb98bd899c42a59d59759de7faeac621p@chr8:57354119..57354137, +
1.46e-39FFCP PHASE1:Hg19::chr19:18895742..18895757,-#_9787ea606b991d9962a08f28d85b211ap@chr19:18895742..18895757, -
1.46e-39FFCP PHASE2:Hg19::chr19:18895742..18895757,-#_9787ea606b991d9962a08f28d85b211ap@chr19:18895742..18895757, -
6.91e-39FFCP PHASE1:Hg19::chr7:15725581..15725587,-#_7abe3a84c04228e74f3eec47110b232fp13@MEOX2
6.91e-39FFCP PHASE2:Hg19::chr7:15725581..15725587,-#_7abe3a84c04228e74f3eec47110b232fp13@MEOX2
8.37e-39FFCP PHASE2:Hg19::chr1:203149809..203149816,-#_6f4d2f96c64073b9f66c8092f0f04831p@chr1:203149809..203149816, -
8.37e-39FFCP PHASE1:Hg19::chr1:203149809..203149816,-#_6f4d2f96c64073b9f66c8092f0f04831p@chr1:203149809..203149816, -
1.01e-38FFCP PHASE1:Hg19::chr1:203152872..203152879,-#_34a48d7a33bc2ec4483d342b557d50edp@chr1:203152872..203152879, -
1.01e-38FFCP PHASE2:Hg19::chr1:203152872..203152879,-#_34a48d7a33bc2ec4483d342b557d50edp@chr1:203152872..203152879, -
3.19e-38FFCP PHASE2:Hg19::chr18:61495529..61495546,+#_7d92553e7e4df353899361b0f4d6852ep@chr18:61495529..61495546, +
3.19e-38FFCP PHASE1:Hg19::chr18:61495529..61495546,+#_7d92553e7e4df353899361b0f4d6852ep@chr18:61495529..61495546, +
8.41e-38FFCP PHASE2:Hg19::chr8:110346720..110346722,-#_d5e177680eebdf476a39061fd7ae3cfep5@NUDCD1
8.41e-38FFCP PHASE1:Hg19::chr8:110346720..110346722,-#_d5e177680eebdf476a39061fd7ae3cfep5@NUDCD1
2.95e-37FFCP PHASE2:Hg19::chr10:28033776..28033788,+#_a0cd0e6b31d1fc16170d319cfd3f8d1ep1@ENST00000419777
2.95e-37FFCP PHASE1:Hg19::chr10:28033776..28033788,+#_a0cd0e6b31d1fc16170d319cfd3f8d1ep1@ENST00000419777
1.39e-34FFCP PHASE2:Hg19::chr1:203148394..203148401,-#_931900e1ad770c8f51dd4f3a9c76d11fp10@CHI3L1
1.39e-34FFCP PHASE1:Hg19::chr1:203148394..203148401,-#_931900e1ad770c8f51dd4f3a9c76d11fp10@CHI3L1
2.19e-34FFCP PHASE2:Hg19::chr7:87906696..87906704,-#_ce25245fbe8bf7b2f8139780c7c12322p@chr7:87906696..87906704, -
2.19e-34FFCP PHASE1:Hg19::chr12:91502776..91502785,-#_ce25245fbe8bf7b2f8139780c7c12322p15@LUM
2.19e-34FFCP PHASE1:Hg19::chr7:87906696..87906704,-#_ce25245fbe8bf7b2f8139780c7c12322p@chr7:87906696..87906704, -
2.19e-34FFCP PHASE2:Hg19::chr12:91502776..91502785,-#_ce25245fbe8bf7b2f8139780c7c12322p15@LUM
4.27e-34FFCP PHASE2:Hg19::chr1:203153416..203153419,-#_1c91cbf3e0c18e02e4993924652c8e15p@chr1:203153416..203153419, -
4.27e-34FFCP PHASE1:Hg19::chr1:203153416..203153419,-#_1c91cbf3e0c18e02e4993924652c8e15p@chr1:203153416..203153419, -
5.96e-34FFCP PHASE1:Hg19::chr10:127350469..127350475,-#_1d4dc9e5aa6f328f94f9766e520286ffp@chr10:127350469..127350475, -
5.96e-34FFCP PHASE2:Hg19::chr1:110471879..110471901,+#_1d4dc9e5aa6f328f94f9766e520286ffp@chr1:110471879..110471901, +
5.96e-34FFCP PHASE1:Hg19::chr1:110471879..110471901,+#_1d4dc9e5aa6f328f94f9766e520286ffp@chr1:110471879..110471901, +
5.96e-34FFCP PHASE2:Hg19::chr10:127350469..127350475,-#_1d4dc9e5aa6f328f94f9766e520286ffp@chr10:127350469..127350475, -
8.46e-34FFCP PHASE2:Hg19::chr1:56320708..56320728,-#_9d5ef75a3fc40b316887c71be183d9d6p@chr1:56320708..56320728, -
8.46e-34FFCP PHASE1:Hg19::chr1:56320708..56320728,-#_9d5ef75a3fc40b316887c71be183d9d6p@chr1:56320708..56320728, -
9.1e-34FFCP PHASE1:Hg19::chr8:57354463..57354473,+#_58060b87a1fea85235dc9780635676a7p@chr8:57354463..57354473, +
9.1e-34FFCP PHASE2:Hg19::chr8:57354463..57354473,+#_58060b87a1fea85235dc9780635676a7p@chr8:57354463..57354473, +
2.31e-33FFCP PHASE2:Hg19::chr18:43418712..43418734,+#_22020a027586eacd91328fb366d0af4ep7@SIGLEC15
2.31e-33FFCP PHASE1:Hg19::chr18:43418712..43418734,+#_22020a027586eacd91328fb366d0af4ep7@SIGLEC15
7.76e-32FFCP PHASE1:Hg19::chr19:18899448..18899459,-#_4fe5dd283202ba62917f9ff884af3a78p@chr19:18899448..18899459, -
7.76e-32FFCP PHASE2:Hg19::chr19:18899448..18899459,-#_4fe5dd283202ba62917f9ff884af3a78p@chr19:18899448..18899459, -
1.32e-31FFCP PHASE2:Hg19::chr3:100494130..100494141,-#_0b118fb4f872fadc6dd678c27944ca63p@chr3:100494130..100494141, -
1.32e-31FFCP PHASE1:Hg19::chr3:100494130..100494141,-#_0b118fb4f872fadc6dd678c27944ca63p@chr3:100494130..100494141, -
9.03e-31FFCP PHASE2:Hg19::chr19:18900031..18900054,+#_174ee83358bf0ff6fb96f169a01b00c9p@chr19:18900031..18900054, +
9.03e-31FFCP PHASE1:Hg19::chr19:18900031..18900054,+#_174ee83358bf0ff6fb96f169a01b00c9p@chr19:18900031..18900054, +
1.09e-30FFCP PHASE2:Hg19::chr1:161969956..161969963,-#_611af8cca94d81c65f4e60352314202dp@chr1:161969956..161969963, -
1.09e-30FFCP PHASE1:Hg19::chr1:161969956..161969963,-#_611af8cca94d81c65f4e60352314202dp@chr1:161969956..161969963, -
2.48e-30FFCP PHASE1:Hg19::chr19:18896512..18896527,-#_e7995015c6cd22cf58fa76001ad14040p@chr19:18896512..18896527, -
2.48e-30FFCP PHASE2:Hg19::chr19:18896512..18896527,-#_e7995015c6cd22cf58fa76001ad14040p@chr19:18896512..18896527, -
2.67e-30FFCP PHASE1:Hg19::chr5:79351765..79351792,+#_88a975bef8e0cbd06bae5843e1c7918dp@chr5:79351765..79351792, +
2.67e-30FFCP PHASE2:Hg19::chr5:79351765..79351792,+#_88a975bef8e0cbd06bae5843e1c7918dp@chr5:79351765..79351792, +
5.0e-30FFCP PHASE2:Hg19::chr20:48140767..48140776,-#_5c6f49b8a92d395449083339d1121d77p@chr20:48140767..48140776, -
5.0e-30FFCP PHASE1:Hg19::chr20:48140767..48140776,-#_5c6f49b8a92d395449083339d1121d77p@chr20:48140767..48140776, -
2.91e-29FFCP PHASE2:Hg19::chr19:18895812..18895830,-#_8fd4fb12b91514504cefefc7abcb53b0p@chr19:18895812..18895830, -
2.91e-29FFCP PHASE1:Hg19::chr19:18895812..18895830,-#_8fd4fb12b91514504cefefc7abcb53b0p@chr19:18895812..18895830, -
5.18e-29FFCP PHASE2:Hg19::chr15:81243109..81243120,+#_c308b86495a9208c18d93d59a61f54b4p@chr15:81243109..81243120, +
5.18e-29FFCP PHASE1:Hg19::chr15:81243109..81243120,+#_c308b86495a9208c18d93d59a61f54b4p@chr15:81243109..81243120, +
1.11e-28FFCP PHASE1:Hg19::chr19:18896642..18896656,-#_fcad8ddabc133819ba1776dee47d4c80p@chr19:18896642..18896656, -
1.11e-28FFCP PHASE2:Hg19::chr19:18896642..18896656,-#_fcad8ddabc133819ba1776dee47d4c80p@chr19:18896642..18896656, -
1.42e-28FFCP PHASE2:Hg19::chr1:56977818..56977827,-#_2d69cb6e2672316efc36353bf85b8a54p@chr1:56977818..56977827, -
1.42e-28FFCP PHASE1:Hg19::chr1:56977818..56977827,-#_2d69cb6e2672316efc36353bf85b8a54p@chr1:56977818..56977827, -
2.06e-28FFCP PHASE2:Hg19::chr17:38613300..38613311,-#_fe1eed6352f47b826d4e39d70cd3812fp@chr17:38613300..38613311, -
2.06e-28FFCP PHASE1:Hg19::chr17:38613300..38613311,-#_fe1eed6352f47b826d4e39d70cd3812fp@chr17:38613300..38613311, -
3.59e-28FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_94ce55ce4de9b56b4d1d196cc1ddceb9p13@CHI3L1
3.59e-28FFCP PHASE2:Hg19::chr3:69154031..69154043,+#_94ce55ce4de9b56b4d1d196cc1ddceb9p@chr3:69154031..69154043, +
3.59e-28FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_94ce55ce4de9b56b4d1d196cc1ddceb9p13@CHI3L1
3.59e-28FFCP PHASE1:Hg19::chr3:69154031..69154043,+#_94ce55ce4de9b56b4d1d196cc1ddceb9p@chr3:69154031..69154043, +
6.24e-28FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_54c73441c6da2bd241eced7a1a6ed0f7p@chr8:57354275..57354292, -
6.24e-28FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_54c73441c6da2bd241eced7a1a6ed0f7p@chr8:57354275..57354292, -
9.35e-28FFCP PHASE1:Hg19::chr4:26491909..26491918,-#_55ff8d7c8c5b7ebb9e74aad484d1e962p2@CCKAR
9.35e-28FFCP PHASE2:Hg19::chr4:26491909..26491918,-#_55ff8d7c8c5b7ebb9e74aad484d1e962p2@CCKAR
1.19e-27FFCP PHASE2:Hg19::chr3:86992689..86992700,-#_05b007a245db610c20539219f4c6afd3p@chr3:86992689..86992700, -
1.19e-27FFCP PHASE1:Hg19::chr3:86992689..86992700,-#_05b007a245db610c20539219f4c6afd3p@chr3:86992689..86992700, -
1.39e-27FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_43c73e70b29b1a82a8f66764227ef09cp2@ENST00000436845
1.39e-27FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_43c73e70b29b1a82a8f66764227ef09cp2@ENST00000436845
2.46e-27FFCP PHASE2:Hg19::chr19:18895892..18895911,-#_0e7b341c404f60834d23a7bd74959a01p@chr19:18895892..18895911, -
2.46e-27FFCP PHASE1:Hg19::chr19:18895892..18895911,-#_0e7b341c404f60834d23a7bd74959a01p@chr19:18895892..18895911, -
3.11e-27FFCP PHASE2:Hg19::chr3:29966392..29966406,+#_cfee021d193db391f0e847f28cb07accp22@RBMS3
3.11e-27FFCP PHASE1:Hg19::chr3:29966392..29966406,+#_cfee021d193db391f0e847f28cb07accp22@RBMS3
3.89e-27FFCP PHASE2:Hg19::chr1:203151934..203151947,-#_55e6541fe2df11299607f97b5e43d8c8p7@CHI3L1
3.89e-27FFCP PHASE1:Hg19::chr1:203151934..203151947,-#_55e6541fe2df11299607f97b5e43d8c8p7@CHI3L1

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