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{{UBERON
{{UBERON
|id=UBERON:0010740
|alt_id=
|name=bone of appendage girdle complex
|namespace=
|def="A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [UBERON:cjm, UBERONREF:0000003]
|xref=MA:0000688
|is_a=UBERON:0001474
|synonym="bone of extended limb/fin region" RELATED [UBERON:cjm, UBERONREF:0000003];;"limb bone" RELATED [MA:0000688, UBERONREF:0000003]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [UBERON:cjm, UBERONREF:0000003]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010740
|is_a=UBERON:0001474
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=bone of appendage girdle complex
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0010707;;UBERON:0002091;;UBERON:0010707
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bone of extended limb/fin region" RELATED [UBERON:cjm, UBERONREF:0000003];;"limb bone" RELATED [MA:0000688, UBERONREF:0000003]
|union_of=
|xref=MA:0000688
}}
}}

Latest revision as of 18:09, 12 September 2014

Name:bone of appendage girdle complex
Namespace:FANTOM
Definition:"A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:
MA:0000688
Synonyms: "bone of extended limb/fin region" RELATED [UBERON:cjm, UBERONREF:0000003]
"limb bone" RELATED [MA:0000688, UBERONREF:0000003]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element)
part_of:UBERON:0010707(appendage girdle complex),UBERON:0002091(appendicular skeleton),UBERON:0010707(appendage girdle complex)



Children

is a:UBERON:0004375 (bone of free limb or fin),UBERON:0010742 (bone of pelvic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010740 (bone of appendage girdle complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_118a4dfeef9ccaaa1e0e605bfbdb669fp26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_118a4dfeef9ccaaa1e0e605bfbdb669fp26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_6557989b84ab3988810e71156d7c1bcfp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_6557989b84ab3988810e71156d7c1bcfp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_6557989b84ab3988810e71156d7c1bcfp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_6557989b84ab3988810e71156d7c1bcfp@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_6557989b84ab3988810e71156d7c1bcfp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_6557989b84ab3988810e71156d7c1bcfp@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_0fa8366c9d37d4228f7d43cdcd483346p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_0fa8366c9d37d4228f7d43cdcd483346p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_bdb6f25981e136820e97180f47cd8cecp@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_bdb6f25981e136820e97180f47cd8cecp@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_8c893c305439f156640928f6ef2f7ff4p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_8c893c305439f156640928f6ef2f7ff4p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_8c893c305439f156640928f6ef2f7ff4p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_8c893c305439f156640928f6ef2f7ff4p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_8c893c305439f156640928f6ef2f7ff4p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_8c893c305439f156640928f6ef2f7ff4p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_8c893c305439f156640928f6ef2f7ff4p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_8c893c305439f156640928f6ef2f7ff4p@chr16:24096441..24096449, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_a800dc891d37cce3d706ecb915001858p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_a800dc891d37cce3d706ecb915001858p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_3293cd5fe42ade831c74df891373a93cp@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_3293cd5fe42ade831c74df891373a93cp@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_b578ba7c58b9f0320c7e7db27641bd8cp3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_b578ba7c58b9f0320c7e7db27641bd8cp3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_4271b45bfdf99502011e74bc00c1e620p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_4271b45bfdf99502011e74bc00c1e620p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_d6378c51c3286214fa9147852794220cp5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_d6378c51c3286214fa9147852794220cp5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_17602a8b3e5727f334d704f7b08f8a7ep2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_17602a8b3e5727f334d704f7b08f8a7ep2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_a629d89887d5fffb036161a664372ca0p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_a629d89887d5fffb036161a664372ca0p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_79e6a7228ef4ff63eb1b12b58275038fp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_79e6a7228ef4ff63eb1b12b58275038fp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_79e6a7228ef4ff63eb1b12b58275038fp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_79e6a7228ef4ff63eb1b12b58275038fp2@Oscar
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_01164108e8d93f5534acd639a768a499p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_01164108e8d93f5534acd639a768a499p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_01164108e8d93f5534acd639a768a499p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_01164108e8d93f5534acd639a768a499p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_169fe8f67d33919b4c4f1dc84378b142p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_169fe8f67d33919b4c4f1dc84378b142p6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_558cb68cf900039aa0d96532ebde9a26p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_558cb68cf900039aa0d96532ebde9a26p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_558cb68cf900039aa0d96532ebde9a26p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_558cb68cf900039aa0d96532ebde9a26p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_a807fda2bd0be38f35e73339c83c8688p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_a807fda2bd0be38f35e73339c83c8688p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_7c392940e9ba21afd145c3051d7ba8e1p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_7c392940e9ba21afd145c3051d7ba8e1p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_7c392940e9ba21afd145c3051d7ba8e1p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_7c392940e9ba21afd145c3051d7ba8e1p@chr12:70396969..70396979, +
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_0edcdae520f7f8c748d4893a5dc2a105p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_0edcdae520f7f8c748d4893a5dc2a105p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_a773f825b6f578475ad9bedb1cc54049p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_a773f825b6f578475ad9bedb1cc54049p2@Myoz3
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_04a6d32be4c90f7904ca50d89509293ap2@Myh4
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_04a6d32be4c90f7904ca50d89509293ap2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_7f5f478f39a286cd20d0abdc1ba59150p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_7f5f478f39a286cd20d0abdc1ba59150p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_48c34d838d521a0379fce2b06853af4fp1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_48c34d838d521a0379fce2b06853af4fp@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_48c34d838d521a0379fce2b06853af4fp@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_48c34d838d521a0379fce2b06853af4fp1@Msmp
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_3e7ec4c2f678f89aa9b5a821bb19f419p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_3e7ec4c2f678f89aa9b5a821bb19f419p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_3e7ec4c2f678f89aa9b5a821bb19f419p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_3e7ec4c2f678f89aa9b5a821bb19f419p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_e86a9542a542e3f1146d341399a1d925p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_e86a9542a542e3f1146d341399a1d925p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_1c956ac064483de39deb42694ba9accbp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_1c956ac064483de39deb42694ba9accbp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_5a97fe5141ed1d5e741104a10efbafc7p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_5a97fe5141ed1d5e741104a10efbafc7p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_98a6c1fbeb9599bde5577104a9613df3p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_98a6c1fbeb9599bde5577104a9613df3p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_cd4db17d5b0e9d10cd05f3a9e0533f83p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_cd4db17d5b0e9d10cd05f3a9e0533f83p6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_cc09a6361493b6f8d281eb90675b8705p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_cc09a6361493b6f8d281eb90675b8705p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_3e6fcbdedaa492f40b408024235897f5p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_3e6fcbdedaa492f40b408024235897f5p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_3e6fcbdedaa492f40b408024235897f5p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_3e6fcbdedaa492f40b408024235897f5p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_1cb277bf50549ce416c8ebc4867420c3p4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_1cb277bf50549ce416c8ebc4867420c3p4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_b65e47e05b57836aa13e20024ce4b536p1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_b65e47e05b57836aa13e20024ce4b536p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_b0d550dec5811a99cdff277ecf951937p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_b0d550dec5811a99cdff277ecf951937p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_b0d550dec5811a99cdff277ecf951937p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_b0d550dec5811a99cdff277ecf951937p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_c744b0f03ce1c97d9c07f7fbf261d599p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_c744b0f03ce1c97d9c07f7fbf261d599p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_c744b0f03ce1c97d9c07f7fbf261d599p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_c744b0f03ce1c97d9c07f7fbf261d599p@chr15:97806574..97806585, -
1.36e-25FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_b812f7d0a5e14c35d88259aab0b3d4e7p2@Siglec15
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_b812f7d0a5e14c35d88259aab0b3d4e7p@chr2:180890942..180890956, -

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