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{{CL
{{CL
|id=CL:0000499
|alt_id=
|name=stromal cell
|namespace=cell;;efo
|def="A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830]
|xref=BTO:0002064;;FMA:83624
|is_a=CL:0002320
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000134
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000499
|is_a=CL:0002320
|is_obsolete=
|located_in=
|located_in=
|name=stromal cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0002064;;FMA:83624
}}
}}

Latest revision as of 16:34, 12 September 2014

Name:stromal cell
Namespace:FANTOM
Definition:"A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830]
Xrefs:
links:

BTO:0002064

FMA:83624


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002320(connective tissue cell)
develops_from:CL:0000134(mesenchymal cell)



Children


is a:CL:0000135 (fibrocyte),CL:0000327 (extracellular matrix secreting cell),CL:0002255 (stromal cell of endometrium),CL:0002574 (stromal cell of pancreas),CL:0002622 (prostate stromal cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000499 (stromal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.7e-39FFCP PHASE2:Mm9::chr4:88940410..88940415,-#_545502ce61e66778c0954f628c5e6950p6@Cdkn2a
1.7e-39FFCP PHASE1:Mm9::chr4:88940410..88940415,-#_545502ce61e66778c0954f628c5e6950p6@Cdkn2a
2.12e-38FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_9ed9de45f2f0c2b482ede88462daad4ep8@ACAN
2.12e-38FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_9ed9de45f2f0c2b482ede88462daad4ep8@ACAN
2.37e-38FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_c05f326cf07cb4d7958c2717cc193725p9@ERG
2.37e-38FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_c05f326cf07cb4d7958c2717cc193725p9@ERG
4.69e-33FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_4072d1ee4bac8c9d079a4464fabeb3eep19@CHI3L1
4.69e-33FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_4072d1ee4bac8c9d079a4464fabeb3eep19@CHI3L1
5.7e-32FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_cd88056fb14eaa4072c8103b2e1a4dfep@chr15:89417758..89417770, +
5.7e-32FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_cd88056fb14eaa4072c8103b2e1a4dfep@chr15:89417758..89417770, +
6.54e-32FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_4b053d06362be978f7184be13615d920p6@ACAN
6.54e-32FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_4b053d06362be978f7184be13615d920p6@ACAN
3.21e-31FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_08e76ab867ec96fbdac9772d65676560p13@CHI3L1
3.21e-31FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_08e76ab867ec96fbdac9772d65676560p13@CHI3L1
9.11e-31FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_04a967c5b3d93c28145d528b70ffe153p20@CHI3L1
9.11e-31FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_04a967c5b3d93c28145d528b70ffe153p20@CHI3L1
5.61e-30FFCP PHASE2:Mm9::chr10:94173889..94173890,-#_08718e6774157a77e4beddcb3b985658p@chr10:94173889..94173890, -
5.61e-30FFCP PHASE2:Mm9::chrX:45409736..45409738,+#_08718e6774157a77e4beddcb3b985658p@chrX:45409736..45409738, +
5.61e-30FFCP PHASE2:Mm9::chr2:156282978..156282979,+#_08718e6774157a77e4beddcb3b985658p@chr2:156282978..156282979, +
5.61e-30FFCP PHASE1:Mm9::chr4:61715146..61715151,-#_08718e6774157a77e4beddcb3b985658p1@Mup20
5.61e-30FFCP PHASE2:Mm9::chr4:61715146..61715151,-#_08718e6774157a77e4beddcb3b985658p1@Mup20
5.61e-30FFCP PHASE1:Mm9::chrX:45409736..45409738,+#_08718e6774157a77e4beddcb3b985658p@chrX:45409736..45409738, +
5.61e-30FFCP PHASE1:Mm9::chr2:156282978..156282979,+#_08718e6774157a77e4beddcb3b985658p@chr2:156282978..156282979, +
5.61e-30FFCP PHASE2:Mm9::chr4:50498164..50498166,+#_08718e6774157a77e4beddcb3b985658p@chr4:50498164..50498166, +
5.61e-30FFCP PHASE1:Mm9::chr10:94173889..94173890,-#_08718e6774157a77e4beddcb3b985658p@chr10:94173889..94173890, -
5.61e-30FFCP PHASE1:Mm9::chr4:50498164..50498166,+#_08718e6774157a77e4beddcb3b985658p@chr4:50498164..50498166, +
5.61e-30FFCP PHASE2:Mm9::chr17:15914532..15914535,+#_08718e6774157a77e4beddcb3b985658p@chr17:15914532..15914535, +
5.61e-30FFCP PHASE1:Mm9::chr17:15914532..15914535,+#_08718e6774157a77e4beddcb3b985658p@chr17:15914532..15914535, +
9.43e-30FFCP PHASE1:Hg19::chr1:203151934..203151947,-#_5269bb3b1911d6cbaec0280f6ab329fep7@CHI3L1
9.43e-30FFCP PHASE2:Hg19::chr1:203151934..203151947,-#_5269bb3b1911d6cbaec0280f6ab329fep7@CHI3L1
1.1e-29FFCP PHASE1:Mm9::chr4:138749194..138749201,+#_ebf32592bab4319ba5aa2a5e99e52387p@chr4:138749194..138749201, +
1.1e-29FFCP PHASE2:Mm9::chr4:138749194..138749201,+#_ebf32592bab4319ba5aa2a5e99e52387p@chr4:138749194..138749201, +
1.3e-29FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_d26a8cde76f3c4384043b8e8bce49827p14@CHI3L1
1.3e-29FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_d26a8cde76f3c4384043b8e8bce49827p14@CHI3L1
1.54e-29FFCP PHASE1:Mm9::chr7:4729743..4729746,-#_661f51b3e2943f81dcab3ce38e84a307p1@Il11
1.54e-29FFCP PHASE2:Mm9::chr7:4729743..4729746,-#_661f51b3e2943f81dcab3ce38e84a307p1@Il11
5.86e-29FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_f6cf35c03ba83638417b0b9733e026e1p@chr18:22150956..22150983, +
5.86e-29FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_f6cf35c03ba83638417b0b9733e026e1p@chr18:22150956..22150983, +
1.3e-28FFCP PHASE1:Hg19::chr1:203154342..203154363,-#_dd04190aa649e9aac538c40384f24fb3p9@CHI3L1
1.3e-28FFCP PHASE2:Hg19::chr1:203154342..203154363,-#_dd04190aa649e9aac538c40384f24fb3p9@CHI3L1
2.66e-28FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_ca009baba66f2a58fe6b2fa508e6d63ap@chr1:186273262..186273282, +
2.66e-28FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_ca009baba66f2a58fe6b2fa508e6d63ap@chr1:186273262..186273282, +
8.58e-28FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_2e49a6376059dcd0ceb80efec5333488p@chr1:203152908..203152924, -
8.58e-28FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_2e49a6376059dcd0ceb80efec5333488p@chr1:203152908..203152924, -
2.33e-26FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_562861c2f019bf609b5163572359a59dp16@CHI3L1
2.33e-26FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_562861c2f019bf609b5163572359a59dp16@CHI3L1
2.76e-26FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_1103ceb063e8052d3209715465f551b5p21@CHI3L1
2.76e-26FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_1103ceb063e8052d3209715465f551b5p21@CHI3L1
3.26e-26FFCP PHASE2:Hg19::chr11:73003801..73003812,+#_d52a597a3e8137142bd5c1797894fdf2p5@P2RY6
3.26e-26FFCP PHASE1:Hg19::chr11:73003801..73003812,+#_d52a597a3e8137142bd5c1797894fdf2p5@P2RY6
4.07e-26FFCP PHASE1:Hg19::chr1:203148907..203148922,+#_0057a5f8a3b3a688494ff5c0b8f7e33ep@chr1:203148907..203148922, +
4.07e-26FFCP PHASE2:Hg19::chr1:203148907..203148922,+#_0057a5f8a3b3a688494ff5c0b8f7e33ep@chr1:203148907..203148922, +
5.69e-26FFCP PHASE1:Hg19::chr1:203148057..203148072,+#_54977d4f92e0e7b480f7f54c8db94314p@chr1:203148057..203148072, +
5.69e-26FFCP PHASE2:Hg19::chr1:203148057..203148072,+#_54977d4f92e0e7b480f7f54c8db94314p@chr1:203148057..203148072, +
1.24e-25FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_755bc1363a2926ca17f94e5fd8484e45p10@ACAN
1.24e-25FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_755bc1363a2926ca17f94e5fd8484e45p10@ACAN
1.52e-25FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_9ddcb74ccffa3035e7af32d7b7e518f1p21@SEMA3C
1.52e-25FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_9ddcb74ccffa3035e7af32d7b7e518f1p21@SEMA3C
1.68e-25FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7a814cd39dd6b78d6c89d728fe9c065ap@chr8:57353982..57353991, -
1.68e-25FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7a814cd39dd6b78d6c89d728fe9c065ap@chr8:57353982..57353991, -
2.44e-25FFCP PHASE1:Hg19::chr8:57353888..57353898,-#_8a8669a5916e9440ccd13b644a4780e7p@chr8:57353888..57353898, -
2.44e-25FFCP PHASE2:Hg19::chr8:57353888..57353898,-#_8a8669a5916e9440ccd13b644a4780e7p@chr8:57353888..57353898, -
2.5e-25FFCP PHASE1:Hg19::chr1:203152791..203152804,-#_2a03d94792b09debc3098a8a110f75e0p@chr1:203152791..203152804, -
2.5e-25FFCP PHASE2:Hg19::chr1:203152791..203152804,-#_2a03d94792b09debc3098a8a110f75e0p@chr1:203152791..203152804, -
4.17e-25FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_6e0be5bebe3afb32d28d5ebaf4ec245ep@chr8:57354275..57354292, -
4.17e-25FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_6e0be5bebe3afb32d28d5ebaf4ec245ep@chr8:57354275..57354292, -
9.92e-25FFCP PHASE1:Hg19::chr1:203148394..203148401,-#_c4e5961ecff52a5704821064f0a8754fp10@CHI3L1
9.92e-25FFCP PHASE2:Hg19::chr1:203148394..203148401,-#_c4e5961ecff52a5704821064f0a8754fp10@CHI3L1
1.4e-24FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_9e0ff36bb5fbc99cecd7b2ea738eccfdp@chr7:45953320..45953329, +
1.4e-24FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_9e0ff36bb5fbc99cecd7b2ea738eccfdp@chr7:45953320..45953329, +
2.28e-24FFCP PHASE1:Mm9::chr11:100820213..100820220,-#_f7677782454849b2a684a0c54180f9e8p@chr11:100820213..100820220, -
2.28e-24FFCP PHASE2:Mm9::chr11:100820213..100820220,-#_f7677782454849b2a684a0c54180f9e8p@chr11:100820213..100820220, -
3.35e-24FFCP PHASE1:Hg19::chr1:203148428..203148437,-#_ba610b9e5182b519869c5f9adc4bb8fep11@CHI3L1
3.35e-24FFCP PHASE2:Hg19::chr1:203148428..203148437,-#_ba610b9e5182b519869c5f9adc4bb8fep11@CHI3L1
4.18e-24FFCP PHASE1:Hg19::chr1:203150369..203150408,-#_14d83e6fff19161e4d6b139563e57a03p@chr1:203150369..203150408, -
4.18e-24FFCP PHASE2:Hg19::chr1:203150369..203150408,-#_14d83e6fff19161e4d6b139563e57a03p@chr1:203150369..203150408, -
4.67e-24FFCP PHASE2:Hg19::chr7:45953152..45953169,+#_b106b6dd309361ff9d3be2b759921f9fp@chr7:45953152..45953169, +
4.67e-24FFCP PHASE1:Hg19::chr7:45953152..45953169,+#_b106b6dd309361ff9d3be2b759921f9fp@chr7:45953152..45953169, +
4.8e-24FFCP PHASE1:Hg19::chr8:57358432..57358446,-#_17abb1e6b0e158eff0a85f244cfc0976p3@PENK
4.8e-24FFCP PHASE2:Hg19::chr8:57358432..57358446,-#_17abb1e6b0e158eff0a85f244cfc0976p3@PENK
5.11e-24FFCP PHASE2:Mm9::chr11:117093260..117093293,+#_f48f1fbc03a92cd946b5089a723af5d8p34@Sept9
5.11e-24FFCP PHASE1:Mm9::chr11:117093260..117093293,+#_f48f1fbc03a92cd946b5089a723af5d8p34@Sept9
2.81e-23FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_3af9f2e2878aef4b89cf5da728ed4cf0p@chr7:150824026..150824027, -
2.81e-23FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_3af9f2e2878aef4b89cf5da728ed4cf0p@chr7:150824026..150824027, -
2.87e-23FFCP PHASE1:Hg19::chr1:203151897..203151908,-#_a89d84ae51177230eb2068a331eeac6cp15@CHI3L1
2.87e-23FFCP PHASE2:Hg19::chr1:203151897..203151908,-#_a89d84ae51177230eb2068a331eeac6cp15@CHI3L1
3.92e-23FFCP PHASE1:Hg19::chr1:186276386..186276397,+#_a8f0e2ce39b0e7e7d29e65d84b4c96fep@chr1:186276386..186276397, +
3.92e-23FFCP PHASE2:Hg19::chr1:186276386..186276397,+#_a8f0e2ce39b0e7e7d29e65d84b4c96fep@chr1:186276386..186276397, +
4.23e-23FFCP PHASE1:Hg19::chr8:57353995..57354004,-#_ad2e43e075ebe5308653580979eef4b6p@chr8:57353995..57354004, -
4.23e-23FFCP PHASE2:Hg19::chr8:57353995..57354004,-#_ad2e43e075ebe5308653580979eef4b6p@chr8:57353995..57354004, -
4.76e-23FFCP PHASE1:Hg19::chr1:203154349..203154356,+#_88de34a398bb5780f3b68016b806144cp@chr1:203154349..203154356, +
4.76e-23FFCP PHASE2:Hg19::chr1:203154349..203154356,+#_88de34a398bb5780f3b68016b806144cp@chr1:203154349..203154356, +
6.18e-23FFCP PHASE1:Hg19::chr1:203148612..203148623,-#_bbefce303b08acf34a6638bff920a2f3p12@CHI3L1
6.18e-23FFCP PHASE2:Hg19::chr1:203148612..203148623,-#_bbefce303b08acf34a6638bff920a2f3p12@CHI3L1
1.14e-22FFCP PHASE1:Hg19::chr8:57354119..57354137,+#_f07132422d013631e9d9b33c9d81c0dbp@chr8:57354119..57354137, +
1.14e-22FFCP PHASE2:Hg19::chr8:57354119..57354137,+#_f07132422d013631e9d9b33c9d81c0dbp@chr8:57354119..57354137, +
1.59e-22FFCP PHASE1:Hg19::chr19:18895742..18895757,-#_badc5d5b8fe74398ef6fdc69a65bf6bap@chr19:18895742..18895757, -
1.59e-22FFCP PHASE2:Hg19::chr19:18895742..18895757,-#_badc5d5b8fe74398ef6fdc69a65bf6bap@chr19:18895742..18895757, -
2.58e-22FFCP PHASE1:Hg19::chr8:57354463..57354473,+#_59d9582356fe8090da3fe18b8c4fd1fdp@chr8:57354463..57354473, +
2.58e-22FFCP PHASE2:Hg19::chr8:57354463..57354473,+#_59d9582356fe8090da3fe18b8c4fd1fdp@chr8:57354463..57354473, +

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