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{{CL
{{CL
|id=CL:0000784
|alt_id=
|name=plasmacytoid dendritic cell
|namespace=cell;;efo
|def="A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825]
|xref=BTO:0004625
|is_a=CL:0000451
|synonym="DC2" EXACT [];;"interferon-producing cell" EXACT [];;"IPC" EXACT [];;"lymphoid dendritic cell" EXACT [];;"pDC" EXACT [];;"plasmacytoid monocyte" EXACT [];;"plasmacytoid T cell" EXACT [];;"T-associated plasma cell" EXACT [];;"type 2 DC" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000037
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000784
|is_a=CL:0000451
|is_obsolete=
|located_in=
|located_in=
|name=plasmacytoid dendritic cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="DC2" EXACT [];;"interferon-producing cell" EXACT [];;"IPC" EXACT [];;"lymphoid dendritic cell" EXACT [];;"pDC" EXACT [];;"plasmacytoid monocyte" EXACT [];;"plasmacytoid T cell" EXACT [];;"T-associated plasma cell" EXACT [];;"type 2 DC" EXACT []
|union_of=
|xref=BTO:0004625
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:plasmacytoid dendritic cell
Namespace:FANTOM
Definition:"A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825]
Xrefs:
links:
BTO:0004625
Synonyms: "DC2" EXACT []
"interferon-producing cell" EXACT []
"IPC" EXACT []
"lymphoid dendritic cell" EXACT []
"pDC" EXACT []
"plasmacytoid monocyte" EXACT []
"plasmacytoid T cell" EXACT []
"T-associated plasma cell" EXACT []
"type 2 DC" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000451(dendritic cell)
develops_from:CL:0000037(hematopoietic stem cell)



Children


derives from:FF:0000045 (human plasmacytoid dendritic cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000784 (plasmacytoid dendritic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr2:99181476..99181492,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:99181476..99181492, +
2.79e-195FFCP PHASE2:Hg19::chr21:45602458..45602471,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:45602458..45602471, +
2.79e-195FFCP PHASE1:Hg19::chr19:56623811..56623815,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:56623811..56623815, -
2.79e-195FFCP PHASE1:Hg19::chrX:22056423..22056428,+#_9025b5fd6d22363ef6114b7a2102de6ep13@PHEX
2.79e-195FFCP PHASE2:Hg19::chr17:55950784..55950789,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:55950784..55950789, -
2.79e-195FFCP PHASE2:Hg19::chr19:56623811..56623815,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:56623811..56623815, -
2.79e-195FFCP PHASE2:Hg19::chrX:22056423..22056428,+#_9025b5fd6d22363ef6114b7a2102de6ep13@PHEX
2.79e-195FFCP PHASE1:Hg19::chr12:77160173..77160180,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:77160173..77160180, +
2.79e-195FFCP PHASE2:Hg19::chr12:132541629..132541634,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:132541629..132541634, -
2.79e-195FFCP PHASE1:Hg19::chr6:47445214..47445218,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:47445214..47445218, -
2.79e-195FFCP PHASE1:Hg19::chr20:42340062..42340071,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:42340062..42340071, +
2.79e-195FFCP PHASE1:Hg19::chr12:132541629..132541634,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:132541629..132541634, -
2.79e-195FFCP PHASE2:Hg19::chr17:16892517..16892527,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:16892517..16892527, -
2.79e-195FFCP PHASE1:Hg19::chr3:50365569..50365570,-#_9025b5fd6d22363ef6114b7a2102de6ep3@TUSC2
2.79e-195FFCP PHASE1:Hg19::chr2:60639343..60639352,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:60639343..60639352, -
2.79e-195FFCP PHASE2:Hg19::chr20:42340062..42340071,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:42340062..42340071, +
2.79e-195FFCP PHASE1:Hg19::chr19:5338459..5338468,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5338459..5338468, -
2.79e-195FFCP PHASE2:Hg19::chr3:50365569..50365570,-#_9025b5fd6d22363ef6114b7a2102de6ep3@TUSC2
2.79e-195FFCP PHASE2:Hg19::chr2:60639343..60639352,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:60639343..60639352, -
2.79e-195FFCP PHASE2:Hg19::chr19:5338459..5338468,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5338459..5338468, -
2.79e-195FFCP PHASE2:Hg19::chr17:27065136..27065144,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:27065136..27065144, +
2.79e-195FFCP PHASE1:Hg19::chr15:72209237..72209246,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr15:72209237..72209246, -
2.79e-195FFCP PHASE1:Hg19::chr20:23029606..23029614,-#_9025b5fd6d22363ef6114b7a2102de6ep17@THBD
2.79e-195FFCP PHASE1:Hg19::chr4:8200756..8200765,+#_9025b5fd6d22363ef6114b7a2102de6ep17@SH3TC1
2.79e-195FFCP PHASE1:Hg19::chrX:22056435..22056446,+#_9025b5fd6d22363ef6114b7a2102de6ep3@PHEX
2.79e-195FFCP PHASE1:Hg19::chr2:153415904..153415907,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:153415904..153415907, +
2.79e-195FFCP PHASE2:Hg19::chr20:23029606..23029614,-#_9025b5fd6d22363ef6114b7a2102de6ep17@THBD
2.79e-195FFCP PHASE2:Hg19::chr4:8200756..8200765,+#_9025b5fd6d22363ef6114b7a2102de6ep17@SH3TC1
2.79e-195FFCP PHASE2:Hg19::chr2:99158646..99158653,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:99158646..99158653, +
2.79e-195FFCP PHASE2:Hg19::chrX:22056435..22056446,+#_9025b5fd6d22363ef6114b7a2102de6ep3@PHEX
2.79e-195FFCP PHASE2:Hg19::chr2:153415904..153415907,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:153415904..153415907, +
2.79e-195FFCP PHASE1:Hg19::chr3:46077062..46077087,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr3:46077062..46077087, +
2.79e-195FFCP PHASE2:Hg19::chr15:75304015..75304027,+#_9025b5fd6d22363ef6114b7a2102de6ep14@SCAMP5
2.79e-195FFCP PHASE2:Hg19::chr2:220466151..220466157,+#_9025b5fd6d22363ef6114b7a2102de6ep11@STK11IP
2.79e-195FFCP PHASE1:Hg19::chr21:43723219..43723257,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:43723219..43723257, -
2.79e-195FFCP PHASE1:Hg19::chr6:35026759..35026770,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:35026759..35026770, -
2.79e-195FFCP PHASE2:Hg19::chr3:46077062..46077087,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr3:46077062..46077087, +
2.79e-195FFCP PHASE1:Hg19::chr20:23029956..23029963,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:23029956..23029963, +
2.79e-195FFCP PHASE2:Hg19::chr21:43723219..43723257,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:43723219..43723257, -
2.79e-195FFCP PHASE2:Hg19::chr11:628252..628271,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr11:628252..628271, -
2.79e-195FFCP PHASE1:Hg19::chr11:628252..628271,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr11:628252..628271, -
2.79e-195FFCP PHASE2:Hg19::chr6:35026759..35026770,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:35026759..35026770, -
2.79e-195FFCP PHASE2:Hg19::chr20:23029956..23029963,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:23029956..23029963, +
2.79e-195FFCP PHASE2:Hg19::chr17:40134422..40134444,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:40134422..40134444, -
2.79e-195FFCP PHASE1:Hg19::chr1:53834681..53834688,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:53834681..53834688, -
2.79e-195FFCP PHASE1:Hg19::chr2:99158646..99158653,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr2:99158646..99158653, +
2.79e-195FFCP PHASE1:Hg19::chr18:42136420..42136431,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr18:42136420..42136431, -
2.79e-195FFCP PHASE2:Hg19::chr1:53834681..53834688,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:53834681..53834688, -
2.79e-195FFCP PHASE1:Hg19::chr2:220466151..220466157,+#_9025b5fd6d22363ef6114b7a2102de6ep11@STK11IP
2.79e-195FFCP PHASE2:Hg19::chr18:42134920..42134924,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr18:42134920..42134924, -
2.79e-195FFCP PHASE1:Hg19::chr13:60902553..60902562,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr13:60902553..60902562, +
2.79e-195FFCP PHASE2:Hg19::chr12:7902131..7902142,-#_9025b5fd6d22363ef6114b7a2102de6ep4@CLEC4C
2.79e-195FFCP PHASE1:Hg19::chr9:94935693..94935702,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935693..94935702, -
2.79e-195FFCP PHASE2:Hg19::chr16:56903804..56903818,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:56903804..56903818, +
2.79e-195FFCP PHASE1:Hg19::chr1:66169696..66169704,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:66169696..66169704, +
2.79e-195FFCP PHASE1:Hg19::chr6:342279..342288,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:342279..342288, +
2.79e-195FFCP PHASE2:Hg19::chr9:94935693..94935702,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935693..94935702, -
2.79e-195FFCP PHASE1:Hg19::chr19:5336483..5336493,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5336483..5336493, +
2.79e-195FFCP PHASE2:Hg19::chr6:342279..342288,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr6:342279..342288, +
2.79e-195FFCP PHASE2:Hg19::chr19:5336483..5336493,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr19:5336483..5336493, +
2.79e-195FFCP PHASE2:Hg19::chr1:66169696..66169704,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:66169696..66169704, +
2.79e-195FFCP PHASE2:Hg19::chr16:2737269..2737281,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:2737269..2737281, -
2.79e-195FFCP PHASE1:Hg19::chr8:135614204..135614209,-#_9025b5fd6d22363ef6114b7a2102de6ep22@ZFAT
2.79e-195FFCP PHASE2:Hg19::chr15:75304053..75304061,+#_9025b5fd6d22363ef6114b7a2102de6ep26@SCAMP5
2.79e-195FFCP PHASE2:Hg19::chr8:135614204..135614209,-#_9025b5fd6d22363ef6114b7a2102de6ep22@ZFAT
2.79e-195FFCP PHASE1:Hg19::chr7:4784283..4784288,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr7:4784283..4784288, -
2.79e-195FFCP PHASE1:Hg19::chr17:55950784..55950789,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:55950784..55950789, -
2.79e-195FFCP PHASE1:Hg19::chr1:53834714..53834761,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:53834714..53834761, -
2.79e-195FFCP PHASE1:Hg19::chr12:111537227..111537239,+#_9025b5fd6d22363ef6114b7a2102de6ep7@CUX2
2.79e-195FFCP PHASE1:Hg19::chrX:22056350..22056355,+#_9025b5fd6d22363ef6114b7a2102de6ep11@PHEX
2.79e-195FFCP PHASE2:Hg19::chr7:4784283..4784288,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr7:4784283..4784288, -
2.79e-195FFCP PHASE1:Hg19::chr15:75304015..75304027,+#_9025b5fd6d22363ef6114b7a2102de6ep14@SCAMP5
2.79e-195FFCP PHASE2:Hg19::chr1:53834714..53834761,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr1:53834714..53834761, -
2.79e-195FFCP PHASE2:Hg19::chrX:22056350..22056355,+#_9025b5fd6d22363ef6114b7a2102de6ep11@PHEX
2.79e-195FFCP PHASE1:Hg19::chr5:1799180..1799192,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:1799180..1799192, +
2.79e-195FFCP PHASE1:Hg19::chr20:23211928..23211934,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:23211928..23211934, +
2.79e-195FFCP PHASE1:Hg19::chr9:94935773..94935787,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935773..94935787, -
2.79e-195FFCP PHASE1:Hg19::chr17:16892517..16892527,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:16892517..16892527, -
2.79e-195FFCP PHASE2:Hg19::chr16:56904102..56904111,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:56904102..56904111, +
2.79e-195FFCP PHASE2:Hg19::chr20:23211928..23211934,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr20:23211928..23211934, +
2.79e-195FFCP PHASE2:Hg19::chr9:94935773..94935787,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr9:94935773..94935787, -
2.79e-195FFCP PHASE2:Hg19::chr5:1799180..1799192,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:1799180..1799192, +
2.79e-195FFCP PHASE1:Hg19::chr17:27065136..27065144,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr17:27065136..27065144, +
2.79e-195FFCP PHASE2:Hg19::chr12:111537227..111537239,+#_9025b5fd6d22363ef6114b7a2102de6ep7@CUX2
2.79e-195FFCP PHASE1:Hg19::chr5:43519263..43519271,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:43519263..43519271, +
2.79e-195FFCP PHASE2:Hg19::chr15:72209237..72209246,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr15:72209237..72209246, -
2.79e-195FFCP PHASE1:Hg19::chr12:7902131..7902142,-#_9025b5fd6d22363ef6114b7a2102de6ep4@CLEC4C
2.79e-195FFCP PHASE1:Hg19::chr16:56903804..56903818,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:56903804..56903818, +
2.79e-195FFCP PHASE2:Hg19::chr5:43519263..43519271,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr5:43519263..43519271, +
2.79e-195FFCP PHASE2:Hg19::chr12:77160173..77160180,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:77160173..77160180, +
2.79e-195FFCP PHASE2:Hg19::chr10:103662491..103662497,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr10:103662491..103662497, +
2.79e-195FFCP PHASE2:Hg19::chr11:629346..629350,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr11:629346..629350, -
2.79e-195FFCP PHASE1:Hg19::chr11:629346..629350,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr11:629346..629350, -
2.79e-195FFCP PHASE1:Hg19::chr21:45602441..45602448,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:45602441..45602448, +
2.79e-195FFCP PHASE2:Hg19::chr21:45602441..45602448,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr21:45602441..45602448, +
2.79e-195FFCP PHASE1:Hg19::chrX:22056377..22056388,+#_9025b5fd6d22363ef6114b7a2102de6ep4@PHEX
2.79e-195FFCP PHASE1:Hg19::chr16:2737269..2737281,-#_9025b5fd6d22363ef6114b7a2102de6ep@chr16:2737269..2737281, -
2.79e-195FFCP PHASE2:Hg19::chr12:133349385..133349413,+#_9025b5fd6d22363ef6114b7a2102de6ep@chr12:133349385..133349413, +
2.79e-195FFCP PHASE1:Hg19::chr15:75304053..75304061,+#_9025b5fd6d22363ef6114b7a2102de6ep26@SCAMP5
2.79e-195FFCP PHASE2:Hg19::chrX:22056377..22056388,+#_9025b5fd6d22363ef6114b7a2102de6ep4@PHEX

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