Personal tools

CL:0002427: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002427
|alt_id=
|name=resting double-positive thymocyte
|namespace=cell;;efo
|def="A double-positive, alpha-beta thymocyte that is small and not proliferating." [GOC:tfm, http://www.immgen.org/index_content.html]
|xref=
|is_a=CL:0000809
|synonym="T.DP.sm.Th" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-10-21T01:59:06Z
|def="A double-positive, alpha-beta thymocyte that is small and not proliferating." [GOC:tfm, http://www.immgen.org/index_content.html]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002427
|is_a=CL:0000809
|is_obsolete=
|located_in=
|located_in=
|name=resting double-positive thymocyte
|namespace=FANTOM
|obo_creation_date=2010-10-21T01:59:06Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="T.DP.sm.Th" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:42, 12 September 2014

Name:resting double-positive thymocyte
Namespace:FANTOM
Definition:"A double-positive, alpha-beta thymocyte that is small and not proliferating." [GOC:tfm, http://www.immgen.org/index_content.html]
Synonyms: "T.DP.sm.Th" EXACT []
Created by:tmeehan
Creation date:2010-10-21T01:59:06Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000809(double-positive, alpha-beta thymocyte)



Children


develops from:CL:0002428 (double-positive blast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002427 (resting double-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_3761bc648abcd5418d8e0c97d64b8e56p4@APOBEC4
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_3761bc648abcd5418d8e0c97d64b8e56p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_3761bc648abcd5418d8e0c97d64b8e56p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_3761bc648abcd5418d8e0c97d64b8e56p4@APOBEC4
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_1ccc7b94e50b6839bd33fba1b52803b6p@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_1ccc7b94e50b6839bd33fba1b52803b6p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_1ccc7b94e50b6839bd33fba1b52803b6p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_1ccc7b94e50b6839bd33fba1b52803b6p@chrX:54476786..54476810, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_c09c4ee3af2bbb15040b9322154b10abp@chr16:52032670..52032685, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_c09c4ee3af2bbb15040b9322154b10abp@chr16:52032670..52032685, +
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_e580b80be99d1f6353059948361c3d3cp@chr16:93777453..93777464, +
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_e580b80be99d1f6353059948361c3d3cp1@ENSMUST00000103701
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_e580b80be99d1f6353059948361c3d3cp@chr16:93777453..93777464, +
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_e580b80be99d1f6353059948361c3d3cp1@ENSMUST00000103701
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_5f436835a36556b7510f959699d1dbc5p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_5f436835a36556b7510f959699d1dbc5p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_5f436835a36556b7510f959699d1dbc5p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_5f436835a36556b7510f959699d1dbc5p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_5f436835a36556b7510f959699d1dbc5p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_5f436835a36556b7510f959699d1dbc5p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_5f436835a36556b7510f959699d1dbc5p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_5f436835a36556b7510f959699d1dbc5p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_5f436835a36556b7510f959699d1dbc5p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_5f436835a36556b7510f959699d1dbc5p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_5f436835a36556b7510f959699d1dbc5p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_5f436835a36556b7510f959699d1dbc5p@chr14:122362270..122362291, -
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_34802313f6e13e67b58702eda8dc3630p17@ANXA1
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_34802313f6e13e67b58702eda8dc3630p17@ANXA1
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_0e80765c9c327683f542c67d637184ddp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_0e80765c9c327683f542c67d637184ddp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_0e80765c9c327683f542c67d637184ddp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_0e80765c9c327683f542c67d637184ddp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_0e80765c9c327683f542c67d637184ddp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_0e80765c9c327683f542c67d637184ddp@chr20:37493438..37493456, -
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_13040022a8c52922aabc42280b0f6938p@chr14:53242248..53242261, +
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_13040022a8c52922aabc42280b0f6938p@chr14:53242248..53242261, +
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_d6c2b2b57a4070b6105314e2ce3ee18fp4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_d6c2b2b57a4070b6105314e2ce3ee18fp4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_d19f75ba0a0e6ffd507199d86618c99ap@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_d19f75ba0a0e6ffd507199d86618c99ap10@Grap2
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_d19f75ba0a0e6ffd507199d86618c99ap@chr1:140069290..140069308, +
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_d19f75ba0a0e6ffd507199d86618c99ap@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_d19f75ba0a0e6ffd507199d86618c99ap10@Grap2
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_d19f75ba0a0e6ffd507199d86618c99ap@chr5:123465978..123465989, -
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_8ad3f104556264d6d539d10abe767b34p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_8ad3f104556264d6d539d10abe767b34p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_8ad3f104556264d6d539d10abe767b34p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_8ad3f104556264d6d539d10abe767b34p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_8ad3f104556264d6d539d10abe767b34p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_8ad3f104556264d6d539d10abe767b34p@chr6:41504409..41504422, -
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_19d7f75d4a8b4c683544e26d87b60bf7p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_19d7f75d4a8b4c683544e26d87b60bf7p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_9fa4a8a332000435d3756837ca909adap@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_9fa4a8a332000435d3756837ca909adap@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_9fa4a8a332000435d3756837ca909adap@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_9fa4a8a332000435d3756837ca909adap@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_9fa4a8a332000435d3756837ca909adap@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_9fa4a8a332000435d3756837ca909adap@chr5:123465955..123465966, -
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_26bb687bb8da4e70435bf6d82e395dc5p@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_26bb687bb8da4e70435bf6d82e395dc5p@chr2:11097490..11097500, +
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_edfd9ca042b82f997fcdfc5ae2038f4ap@chr12:70398221..70398232, -
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_08fa190745e51044b150e3ebf0097851p1@ENSMUST00000103582
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_08fa190745e51044b150e3ebf0097851p1@ENSMUST00000103582
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_bc5e7e031b038969635f04227d906923p@chr2:73290853..73290866, +
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_bc5e7e031b038969635f04227d906923p@chr2:73290853..73290866, +
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_3ea8b2da89d1fb1ebdc16654dc628b05p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_3ea8b2da89d1fb1ebdc16654dc628b05p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_3ea8b2da89d1fb1ebdc16654dc628b05p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_3ea8b2da89d1fb1ebdc16654dc628b05p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_3ea8b2da89d1fb1ebdc16654dc628b05p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_3ea8b2da89d1fb1ebdc16654dc628b05p@chr1:138476217..138476228, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_0592e3aacb6d24fc1aae363b4ce817d8p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_0592e3aacb6d24fc1aae363b4ce817d8p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_0592e3aacb6d24fc1aae363b4ce817d8p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_0592e3aacb6d24fc1aae363b4ce817d8p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_0592e3aacb6d24fc1aae363b4ce817d8p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_0592e3aacb6d24fc1aae363b4ce817d8p@chr11:87558695..87558707, +
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_66f6442192147872d494086ca9b6aa24p@chr4:32339235..32339263, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_66f6442192147872d494086ca9b6aa24p@chr4:32339235..32339263, +
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_382ebe6077612073c983cdd563f6dd1dp5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_382ebe6077612073c983cdd563f6dd1dp3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_382ebe6077612073c983cdd563f6dd1dp3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_382ebe6077612073c983cdd563f6dd1dp5@Cd6
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_bc8a58c5a843673eae9446f1c3607bc1p1@ENSMUST00000103733
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_bc8a58c5a843673eae9446f1c3607bc1p1@ENSMUST00000103733
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_f762f988622b16b3fafcf488db329e68p3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_f762f988622b16b3fafcf488db329e68p3@Tnfrsf25
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_f762f988622b16b3fafcf488db329e68p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_f762f988622b16b3fafcf488db329e68p@chr4:32339511..32339518, +
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_4064685ff6a299ce98c2cde43223b622p@chr6:48656532..48656548, +
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_4064685ff6a299ce98c2cde43223b622p@chr6:48656532..48656548, +
3.91e-58FFCP PHASE1:Mm9::chr14:54795883..54795894,+#_f939b83a22a372b44df37efebe7da7dfp@chr14:54795883..54795894, +
3.91e-58FFCP PHASE1:Mm9::chr7:31208431..31208442,+#_f939b83a22a372b44df37efebe7da7dfp6@Nfkbid

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002427&oldid=3275469"