Personal tools

CL:0000148: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000148
|alt_id=CL:0000572
|name=melanocyte
|namespace=cell;;efo
|def="A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl]
|xref=BTO:0000847;;FMA:70545
|is_a=CL:0000147;;CL:0000710;;EFO:0000700
|synonym="melanophore" NARROW []
|comment=
|comment=
|alt_id=CL:0000572
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000541
|develops_from=CL:0000541
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000148
|is_a=CL:0000147 ;;CL:0000710
|is_obsolete=
|located_in=
|located_in=
|name=melanocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="melanophore" NARROW []
|union_of=
|xref=BTO:0000847;;FMA:70545
}}
}}

Latest revision as of 16:30, 12 September 2014

Name:melanocyte
Namespace:FANTOM
Definition:"A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl]
Xrefs:
links:

BTO:0000847

FMA:70545
Synonyms: "melanophore" NARROW []
Alt_id: CL:0000572


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000147(pigment cell),CL:0000710(neurecto-epithelial cell)
develops_from:CL:0000541(melanoblast)



Children


is a:CL:0002566 (dark melanocyte),CL:0002567 (light melanocyte)
derives from:FF:0000334 (melanocytic induction sample),FF:0000730 (human melanocyte (MC) sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000148 (melanocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.89e-139FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_97e66c5549b85c7278cd400896fe47e4p6@GPR143
3.89e-139FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_97e66c5549b85c7278cd400896fe47e4p6@GPR143
5.38e-137FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_b5ee633eb81f31b7dae3af069b9c1a09p1@ENST00000380106
5.38e-137FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12709332..12709345, +
5.38e-137FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12708060..12708071, -
5.38e-137FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12702367..12702377, +
5.38e-137FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr16:89986251..89986268, +
5.38e-137FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_b5ee633eb81f31b7dae3af069b9c1a09p1@AK129493
5.38e-137FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12708978..12708990, +
5.38e-137FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_b5ee633eb81f31b7dae3af069b9c1a09p24@TYRP1
5.38e-137FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_b5ee633eb81f31b7dae3af069b9c1a09p33@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_b5ee633eb81f31b7dae3af069b9c1a09p1@ENST00000380106
5.38e-137FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12709332..12709345, +
5.38e-137FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_b5ee633eb81f31b7dae3af069b9c1a09p11@IL6R
5.38e-137FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12708060..12708071, -
5.38e-137FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12702367..12702377, +
5.38e-137FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_b5ee633eb81f31b7dae3af069b9c1a09p7@MFSD12
5.38e-137FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_b5ee633eb81f31b7dae3af069b9c1a09p1@AK129493
5.38e-137FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr9:12708978..12708990, +
5.38e-137FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_b5ee633eb81f31b7dae3af069b9c1a09p@chr16:89986251..89986268, +
5.38e-137FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_b5ee633eb81f31b7dae3af069b9c1a09p11@IL6R
5.38e-137FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_b5ee633eb81f31b7dae3af069b9c1a09p33@TYRP1
5.38e-137FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_b5ee633eb81f31b7dae3af069b9c1a09p24@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_b5ee633eb81f31b7dae3af069b9c1a09p7@MFSD12
3.56e-120FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713p8@MFSD12
3.56e-120FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713p2@AK129493
3.56e-120FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713p8@MFSD12
3.56e-120FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_9268d0d7b6ac6d5dc43db8d4a9d3d713p2@AK129493
4.24e-120FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_8d1c05573039ab914061bcac9a3c951cp12@uc003lyl.3
4.24e-120FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_8d1c05573039ab914061bcac9a3c951cp19@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_8d1c05573039ab914061bcac9a3c951cp@chr9:12704349..12704362, +
4.24e-120FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_8d1c05573039ab914061bcac9a3c951cp22@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_8d1c05573039ab914061bcac9a3c951cp27@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_8d1c05573039ab914061bcac9a3c951cp19@TYRP1
4.24e-120FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_8d1c05573039ab914061bcac9a3c951cp12@uc003lyl.3
4.24e-120FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_8d1c05573039ab914061bcac9a3c951cp22@TYRP1
4.24e-120FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_8d1c05573039ab914061bcac9a3c951cp@chr9:12704349..12704362, +
4.24e-120FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_8d1c05573039ab914061bcac9a3c951cp27@TYRP1
5.06e-120FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_7fce9dafc771a0648a834dc520847463p@chr9:12704539..12704547, +
5.06e-120FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_7fce9dafc771a0648a834dc520847463p@chr9:12704539..12704547, +
5.06e-120FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_7fce9dafc771a0648a834dc520847463p2@OCA2
5.06e-120FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_7fce9dafc771a0648a834dc520847463p2@OCA2
6.04e-120FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_f8a04e9a3043341733288908852978f2p36@TYRP1
6.04e-120FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_f8a04e9a3043341733288908852978f2p36@TYRP1
7.21e-120FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_c32355bc9edc43477ca6baae5c4054aep@chr12:56351078..56351092, -
7.21e-120FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_c32355bc9edc43477ca6baae5c4054aep@chr12:56351078..56351092, -
1.29e-117FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_976af084a4f136a3f79b3f4dad601dd7p39@LIMS2
1.29e-117FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_976af084a4f136a3f79b3f4dad601dd7p3@AK129493
1.29e-117FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_976af084a4f136a3f79b3f4dad601dd7p@chr17:77925869..77925876, -
1.29e-117FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_976af084a4f136a3f79b3f4dad601dd7p@chr1:212594718..212594723, +
1.29e-117FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_976af084a4f136a3f79b3f4dad601dd7p@chr9:12704666..12704671, +
1.29e-117FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_976af084a4f136a3f79b3f4dad601dd7p9@MFSD12
1.29e-117FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_976af084a4f136a3f79b3f4dad601dd7p41@MED15
1.29e-117FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_976af084a4f136a3f79b3f4dad601dd7p34@TYRP1
1.29e-117FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_976af084a4f136a3f79b3f4dad601dd7p2@ENST00000380106
1.29e-117FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_976af084a4f136a3f79b3f4dad601dd7p@chr9:12709019..12709029, +
1.29e-117FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_976af084a4f136a3f79b3f4dad601dd7p@chr17:77923816..77923828, -
1.29e-117FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_976af084a4f136a3f79b3f4dad601dd7p@chr9:12709200..12709209, +
1.29e-117FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_976af084a4f136a3f79b3f4dad601dd7p@chr3:69951861..69951868, +
1.29e-117FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_976af084a4f136a3f79b3f4dad601dd7p@chr15:28360793..28360804, -
1.29e-117FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_976af084a4f136a3f79b3f4dad601dd7p4@AK129493
1.29e-117FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_976af084a4f136a3f79b3f4dad601dd7p9@MFSD12
1.29e-117FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_976af084a4f136a3f79b3f4dad601dd7p@chr11:48066945..48066951, +
1.29e-117FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_976af084a4f136a3f79b3f4dad601dd7p16@CAPN3
1.29e-117FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_976af084a4f136a3f79b3f4dad601dd7p13@SLC22A18
1.29e-117FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_976af084a4f136a3f79b3f4dad601dd7p39@LIMS2
1.29e-117FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_976af084a4f136a3f79b3f4dad601dd7p@chr15:28360857..28360860, -
1.29e-117FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_976af084a4f136a3f79b3f4dad601dd7p@chr15:28360793..28360804, -
1.29e-117FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_976af084a4f136a3f79b3f4dad601dd7p3@AK129493
1.29e-117FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_976af084a4f136a3f79b3f4dad601dd7p@chr9:12709019..12709029, +
1.29e-117FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_976af084a4f136a3f79b3f4dad601dd7p@chr17:77925869..77925876, -
1.29e-117FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_976af084a4f136a3f79b3f4dad601dd7p@chr1:212594718..212594723, +
1.29e-117FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_976af084a4f136a3f79b3f4dad601dd7p@chr9:12704666..12704671, +
1.29e-117FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_976af084a4f136a3f79b3f4dad601dd7p41@MED15
1.29e-117FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_976af084a4f136a3f79b3f4dad601dd7p34@TYRP1
1.29e-117FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_976af084a4f136a3f79b3f4dad601dd7p16@CAPN3
1.29e-117FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_976af084a4f136a3f79b3f4dad601dd7p2@ENST00000380106
1.29e-117FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_976af084a4f136a3f79b3f4dad601dd7p@chr15:28360857..28360860, -
1.29e-117FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_976af084a4f136a3f79b3f4dad601dd7p@chr17:77923816..77923828, -
1.29e-117FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_976af084a4f136a3f79b3f4dad601dd7p@chr9:12709200..12709209, +
1.29e-117FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_976af084a4f136a3f79b3f4dad601dd7p@chr3:69951861..69951868, +
1.29e-117FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_976af084a4f136a3f79b3f4dad601dd7p4@AK129493
1.29e-117FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_976af084a4f136a3f79b3f4dad601dd7p@chr11:48066945..48066951, +
1.29e-117FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_976af084a4f136a3f79b3f4dad601dd7p13@SLC22A18
4.33e-107FFCP PHASE1:Hg19::chr9:5892516..5892527,+#_6a1706aa24fbfcf42520a3a64527266bp3@MLANA
4.33e-107FFCP PHASE1:Hg19::chr22:20878024..20878053,+#_6a1706aa24fbfcf42520a3a64527266bp16@MED15
4.33e-107FFCP PHASE1:Hg19::chr17:77924675..77924686,-#_6a1706aa24fbfcf42520a3a64527266bp3@TBC1D16
4.33e-107FFCP PHASE2:Hg19::chr9:12702314..12702344,+#_6a1706aa24fbfcf42520a3a64527266bp@chr9:12702314..12702344, +
4.33e-107FFCP PHASE1:Hg19::chr9:12702379..12702409,+#_6a1706aa24fbfcf42520a3a64527266bp@chr9:12702379..12702409, +
4.33e-107FFCP PHASE2:Hg19::chr9:12698593..12698608,+#_6a1706aa24fbfcf42520a3a64527266bp20@TYRP1
4.33e-107FFCP PHASE2:Hg19::chr9:12694022..12694033,+#_6a1706aa24fbfcf42520a3a64527266bp15@TYRP1
4.33e-107FFCP PHASE2:Hg19::chr9:5892516..5892527,+#_6a1706aa24fbfcf42520a3a64527266bp3@MLANA
4.33e-107FFCP PHASE2:Hg19::chr22:20878024..20878053,+#_6a1706aa24fbfcf42520a3a64527266bp16@MED15
4.33e-107FFCP PHASE2:Hg19::chr17:77924675..77924686,-#_6a1706aa24fbfcf42520a3a64527266bp3@TBC1D16
4.33e-107FFCP PHASE2:Hg19::chr9:12702379..12702409,+#_6a1706aa24fbfcf42520a3a64527266bp@chr9:12702379..12702409, +
4.33e-107FFCP PHASE1:Hg19::chr9:12694022..12694033,+#_6a1706aa24fbfcf42520a3a64527266bp15@TYRP1
4.33e-107FFCP PHASE1:Hg19::chr9:12702314..12702344,+#_6a1706aa24fbfcf42520a3a64527266bp@chr9:12702314..12702344, +
4.33e-107FFCP PHASE1:Hg19::chr9:12698593..12698608,+#_6a1706aa24fbfcf42520a3a64527266bp20@TYRP1
5.07e-107FFCP PHASE2:Hg19::chr9:12693305..12693317,+#_7daa90105e24ba7dea14f999d97c5402p10@TYRP1
5.07e-107FFCP PHASE2:Hg19::chr9:12695659..12695660,+#_7daa90105e24ba7dea14f999d97c5402p31@TYRP1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000148&oldid=3275208"