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{{UBERON
{{UBERON
|id=UBERON:0000002
|alt_id=
|name=uterine cervix
|namespace=
|def="Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
|xref=BTO:0001421;;EFO:0000979;;EMAPA:29927;;EV:0100114;;FMA:17740;;GAID:376;;MA:0000392;;MAT:0000292;;MESH:A.05.360.319.679.256;;ncithesaurus:Cervix;;OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA;;SCTID:245494008;;VHOG:0001359
|is_a=UBERON:0001560;;UBERON:0005156
|synonym="canalis cervicis uteri" EXACT [FMA:17740, FMA:TA];;"cervical canal" EXACT [];;"cervical canal of uterus" EXACT [];;"cervix" EXACT [];;"cervix of uterus" EXACT [];;"cervix uteri" EXACT [EMAPA:29927];;"neck of uterus" EXACT [];;"uterine cervix" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000002
|is_a=UBERON:0001560 ;;UBERON:0005156 ;;UBERON:0014404
|is_obsolete=
|located_in=
|located_in=
|name=uterine cervix
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000995
|part_of=UBERON:0000995
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="canalis cervicis uteri" EXACT [FMA:17740, FMA:TA];;"cervical canal" EXACT [];;"cervical canal of uterus" EXACT [];;"cervix" EXACT [];;"cervix of uterus" EXACT [];;"cervix uteri" EXACT [EMAPA:29927];;"neck of uterus" EXACT [];;"uterine cervix" EXACT []
|union_of=
|xref=BTO:0001421;;EFO:0000979;;EMAPA:29927;;EV:0100114;;FMA:17740;;GAID:376;;MA:0000392;;MAT:0000292;;MESH:A.05.360.319.679.256;;ncithesaurus:Cervix;;OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA;;SCTID:245494008;;VHOG:0001359
}}
}}

Latest revision as of 17:03, 12 September 2014

Name:uterine cervix
Namespace:FANTOM
Definition:"Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
Xrefs:
links:

BTO:0001421
EFO:0000979
EMAPA:29927
EV:0100114
FMA:17740
GAID:376
MA:0000392
MAT:0000292
MESH:A.05.360.319.679.256
ncithesaurus:Cervix
OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA
SCTID:245494008

VHOG:0001359
Synonyms: "canalis cervicis uteri" EXACT [FMA:17740, FMA:TA]
"cervical canal" EXACT []
"cervical canal of uterus" EXACT []
"cervix" EXACT []
"cervix of uterus" EXACT []
"cervix uteri" EXACT [EMAPA:29927]
"neck of uterus" EXACT []
"uterine cervix" EXACT []
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001560(neck of organ),UBERON:0005156(reproductive structure),UBERON:0014404(female anatomical structure)
part_of:UBERON:0000995(uterus)



Children

derives from:FF:0010013 (human cervix - adult sample),FF:0101967 (cervical cancer cell line sample)
part of:CL:0002535 (epithelial cell of cervix),UBERON:0004801 (cervix epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000002 (uterine cervix), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.22e-44FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_b2a2616ddff441bad9b918b45b4f398ep5@TDRD9
1.22e-44FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_b2a2616ddff441bad9b918b45b4f398ep5@TDRD9
4.27e-34FFCP PHASE1:Hg19::chr4:22737597..22737604,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr4:22737597..22737604, +
4.27e-34FFCP PHASE2:Hg19::chr5:40984132..40984133,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr5:40984132..40984133, +
4.27e-34FFCP PHASE2:Hg19::chr20:45400010..45400026,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:45400010..45400026, -
4.27e-34FFCP PHASE1:Hg19::chr22:44569031..44569036,+#_cc22a477a7ea91c6fbd1f8a1c0272520p27@PARVG
4.27e-34FFCP PHASE2:Hg19::chr8:41508303..41508308,-#_cc22a477a7ea91c6fbd1f8a1c0272520p2@NKX6-3
4.27e-34FFCP PHASE2:Hg19::chr7:150871938..150871949,-#_cc22a477a7ea91c6fbd1f8a1c0272520p3@GBX1
4.27e-34FFCP PHASE1:Hg19::chr8:121062548..121062551,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121062548..121062551, -
4.27e-34FFCP PHASE2:Hg19::chr3:187008638..187008641,+#_cc22a477a7ea91c6fbd1f8a1c0272520p10@ENST00000541007, p6@uc003frl.2
4.27e-34FFCP PHASE2:Hg19::chr6:39290815..39290820,-#_cc22a477a7ea91c6fbd1f8a1c0272520p6@KCNK16
4.27e-34FFCP PHASE1:Hg19::chr10:62030084..62030091,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr10:62030084..62030091, -
4.27e-34FFCP PHASE1:Hg19::chr8:41485037..41485047,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485037..41485047, -
4.27e-34FFCP PHASE2:Hg19::chr11:79742692..79742706,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:79742692..79742706, +
4.27e-34FFCP PHASE2:Hg19::chr8:33464773..33464782,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:33464773..33464782, +
4.27e-34FFCP PHASE2:Hg19::chr7:127258120..127258138,-#_cc22a477a7ea91c6fbd1f8a1c0272520p3@PAX4
4.27e-34FFCP PHASE2:Hg19::chr2:9059355..9059366,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:9059355..9059366, -
4.27e-34FFCP PHASE2:Hg19::chr10:62030084..62030091,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr10:62030084..62030091, -
4.27e-34FFCP PHASE2:Hg19::chr6:152084846..152084856,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:152084846..152084856, +
4.27e-34FFCP PHASE2:Hg19::chr19:7184803..7184814,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr19:7184803..7184814, -
4.27e-34FFCP PHASE1:Hg19::chr6:49467630..49467640,+#_cc22a477a7ea91c6fbd1f8a1c0272520p3@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr2:182548451..182548457,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:182548451..182548457, -
4.27e-34FFCP PHASE1:Hg19::chr11:79742692..79742706,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:79742692..79742706, +
4.27e-34FFCP PHASE2:Hg19::chr8:121056349..121056360,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121056349..121056360, -
4.27e-34FFCP PHASE2:Hg19::chr14:57052405..57052416,+#_cc22a477a7ea91c6fbd1f8a1c0272520p4@C14orf101
4.27e-34FFCP PHASE1:Hg19::chr9:35237460..35237466,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr9:35237460..35237466, +
4.27e-34FFCP PHASE1:Hg19::chr12:131117147..131117158,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr12:131117147..131117158, -
4.27e-34FFCP PHASE1:Hg19::chr6:129597668..129597672,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:129597668..129597672, +
4.27e-34FFCP PHASE1:Hg19::chr1:54417667..54417685,+#_cc22a477a7ea91c6fbd1f8a1c0272520p9@LRRC42
4.27e-34FFCP PHASE2:Hg19::chr12:131117147..131117158,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr12:131117147..131117158, -
4.27e-34FFCP PHASE1:Hg19::chr20:21918433..21918444,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918433..21918444, +
4.27e-34FFCP PHASE1:Hg19::chr5:170105957..170105992,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr5:170105957..170105992, -
4.27e-34FFCP PHASE2:Hg19::chr6:25661559..25661563,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:25661559..25661563, +
4.27e-34FFCP PHASE1:Hg19::chr17:26911586..26911592,-#_cc22a477a7ea91c6fbd1f8a1c0272520p9@SPAG5
4.27e-34FFCP PHASE2:Hg19::chr6:49467646..49467657,+#_cc22a477a7ea91c6fbd1f8a1c0272520p1@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr8:41508303..41508308,-#_cc22a477a7ea91c6fbd1f8a1c0272520p2@NKX6-3
4.27e-34FFCP PHASE1:Hg19::chr7:150871938..150871949,-#_cc22a477a7ea91c6fbd1f8a1c0272520p3@GBX1
4.27e-34FFCP PHASE2:Hg19::chr17:79225428..79225433,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:79225428..79225433, -
4.27e-34FFCP PHASE2:Hg19::chr8:41485173..41485181,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485173..41485181, -
4.27e-34FFCP PHASE1:Hg19::chr11:2436040..2436051,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436040..2436051, -
4.27e-34FFCP PHASE1:Hg19::chr3:187008638..187008641,+#_cc22a477a7ea91c6fbd1f8a1c0272520p10@ENST00000541007, p6@uc003frl.2
4.27e-34FFCP PHASE2:Hg19::chr20:20392704..20392711,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:20392704..20392711, -
4.27e-34FFCP PHASE1:Hg19::chr8:121056304..121056311,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121056304..121056311, -
4.27e-34FFCP PHASE1:Hg19::chr20:45400010..45400026,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:45400010..45400026, -
4.27e-34FFCP PHASE2:Hg19::chr7:57928958..57928964,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr7:57928958..57928964, -
4.27e-34FFCP PHASE2:Hg19::chr11:2436040..2436051,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436040..2436051, -
4.27e-34FFCP PHASE1:Hg19::chr8:33464773..33464782,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:33464773..33464782, +
4.27e-34FFCP PHASE1:Hg19::chr7:127258120..127258138,-#_cc22a477a7ea91c6fbd1f8a1c0272520p3@PAX4
4.27e-34FFCP PHASE1:Hg19::chr2:9059355..9059366,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:9059355..9059366, -
4.27e-34FFCP PHASE2:Hg19::chr9:35237473..35237478,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr9:35237473..35237478, +
4.27e-34FFCP PHASE1:Hg19::chr6:152084846..152084856,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:152084846..152084856, +
4.27e-34FFCP PHASE1:Hg19::chr19:7184803..7184814,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr19:7184803..7184814, -
4.27e-34FFCP PHASE1:Hg19::chr6:39290815..39290820,-#_cc22a477a7ea91c6fbd1f8a1c0272520p6@KCNK16
4.27e-34FFCP PHASE1:Hg19::chr2:182546258..182546267,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:182546258..182546267, +
4.27e-34FFCP PHASE1:Hg19::chr17:39755914..39755961,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr17:39755914..39755961, -
4.27e-34FFCP PHASE1:Hg19::chr12:14849414..14849417,-#_cc22a477a7ea91c6fbd1f8a1c0272520p8@GUCY2C
4.27e-34FFCP PHASE2:Hg19::chr17:26911596..26911605,-#_cc22a477a7ea91c6fbd1f8a1c0272520p8@SPAG5
4.27e-34FFCP PHASE2:Hg19::chr12:14849414..14849417,-#_cc22a477a7ea91c6fbd1f8a1c0272520p8@GUCY2C
4.27e-34FFCP PHASE2:Hg19::chr22:47425875..47425879,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr22:47425875..47425879, -
4.27e-34FFCP PHASE2:Hg19::chr20:21918450..21918454,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918450..21918454, +
4.27e-34FFCP PHASE2:Hg19::chr10:62029969..62029974,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr10:62029969..62029974, -
4.27e-34FFCP PHASE1:Hg19::chr6:25661559..25661563,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:25661559..25661563, +
4.27e-34FFCP PHASE2:Hg19::chr22:44377129..44377137,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr22:44377129..44377137, +
4.27e-34FFCP PHASE1:Hg19::chr8:121066549..121066554,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121066549..121066554, -
4.27e-34FFCP PHASE1:Hg19::chr8:41485173..41485181,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485173..41485181, -
4.27e-34FFCP PHASE1:Hg19::chr20:20392704..20392711,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:20392704..20392711, -
4.27e-34FFCP PHASE2:Hg19::chr2:9059377..9059382,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:9059377..9059382, -
4.27e-34FFCP PHASE1:Hg19::chr11:2428348..2428358,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2428348..2428358, -
4.27e-34FFCP PHASE2:Hg19::chr6:152084870..152084873,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:152084870..152084873, +
4.27e-34FFCP PHASE2:Hg19::chr19:7184828..7184838,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr19:7184828..7184838, -
4.27e-34FFCP PHASE1:Hg19::chr6:49467646..49467657,+#_cc22a477a7ea91c6fbd1f8a1c0272520p1@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr11:2428348..2428358,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2428348..2428358, -
4.27e-34FFCP PHASE2:Hg19::chr8:121056549..121056554,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121056549..121056554, -
4.27e-34FFCP PHASE2:Hg19::chr1:70826186..70826193,-#_cc22a477a7ea91c6fbd1f8a1c0272520p4@ENST00000413943
4.27e-34FFCP PHASE2:Hg19::chr8:80963666..80963669,-#_cc22a477a7ea91c6fbd1f8a1c0272520p37@TPD52
4.27e-34FFCP PHASE1:Hg19::chr9:35237473..35237478,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr9:35237473..35237478, +
4.27e-34FFCP PHASE1:Hg19::chr5:40984132..40984133,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr5:40984132..40984133, +
4.27e-34FFCP PHASE2:Hg19::chr20:2361545..2361557,+#_cc22a477a7ea91c6fbd1f8a1c0272520p1@TGM6
4.27e-34FFCP PHASE2:Hg19::chr18:74350663..74350688,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr18:74350663..74350688, -
4.27e-34FFCP PHASE1:Hg19::chr12:131117194..131117202,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr12:131117194..131117202, -
4.27e-34FFCP PHASE1:Hg19::chr22:47425875..47425879,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr22:47425875..47425879, -
4.27e-34FFCP PHASE2:Hg19::chr4:4501551..4501558,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr4:4501551..4501558, -
4.27e-34FFCP PHASE2:Hg19::chr12:131117194..131117202,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr12:131117194..131117202, -
4.27e-34FFCP PHASE1:Hg19::chr20:21918450..21918454,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr20:21918450..21918454, +
4.27e-34FFCP PHASE1:Hg19::chr17:26911596..26911605,-#_cc22a477a7ea91c6fbd1f8a1c0272520p8@SPAG5
4.27e-34FFCP PHASE2:Hg19::chr6:49467678..49467693,+#_cc22a477a7ea91c6fbd1f8a1c0272520p2@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr1:207193762..207193766,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr1:207193762..207193766, +
4.27e-34FFCP PHASE1:Hg19::chr22:44377129..44377137,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr22:44377129..44377137, +
4.27e-34FFCP PHASE2:Hg19::chr4:163124750..163124764,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr4:163124750..163124764, -
4.27e-34FFCP PHASE2:Hg19::chr8:41485201..41485208,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:41485201..41485208, -
4.27e-34FFCP PHASE1:Hg19::chr11:2436082..2436085,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436082..2436085, -
4.27e-34FFCP PHASE1:Hg19::chr8:121056349..121056360,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:121056349..121056360, -
4.27e-34FFCP PHASE2:Hg19::chr11:2436082..2436085,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr11:2436082..2436085, -
4.27e-34FFCP PHASE2:Hg19::chr5:160356414..160356417,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr5:160356414..160356417, -
4.27e-34FFCP PHASE1:Hg19::chr10:62029969..62029974,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr10:62029969..62029974, -
4.27e-34FFCP PHASE1:Hg19::chr2:9059377..9059382,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr2:9059377..9059382, -
4.27e-34FFCP PHASE2:Hg19::chr10:18689637..18689645,+#_cc22a477a7ea91c6fbd1f8a1c0272520p28@CACNB2
4.27e-34FFCP PHASE1:Hg19::chr6:152084870..152084873,+#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr6:152084870..152084873, +
4.27e-34FFCP PHASE1:Hg19::chr19:7184828..7184838,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr19:7184828..7184838, -
4.27e-34FFCP PHASE2:Hg19::chr8:22001308..22001310,-#_cc22a477a7ea91c6fbd1f8a1c0272520p@chr8:22001308..22001310, -

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