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{{UBERON
{{UBERON
|id=UBERON:0005389
|alt_id=
|name=transparent eye structure
|namespace=
|def=
|xref=
|is_a=UBERON:0000064
|synonym="lens" NARROW []
|comment=transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array
|comment=transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005389
|is_a=UBERON:0000064
|is_obsolete=
|located_in=
|located_in=
|name=transparent eye structure
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000970
|part_of=UBERON:0000970
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="lens" NARROW []
|union_of=
|xref=
}}
}}

Latest revision as of 17:53, 12 September 2014

Name:transparent eye structure
Namespace:FANTOM
Synonyms: "lens" NARROW []
Comments:transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part)
part_of:UBERON:0000970(eye)



Children

is a:UBERON:0000965 (lens of camera-type eye)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005389 (transparent eye structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_009498017eb9e7584adc36094588a63dp1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_009498017eb9e7584adc36094588a63dp1@CRYBB3
3.32e-74FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_dc209207ee41e098c5a744d5bd1c5b29p1@CRYBB2
3.32e-74FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_dc209207ee41e098c5a744d5bd1c5b29p1@CRYBB2
5.48e-74FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_17d81f0564e13d7cbf92bacc4ce9883dp1@LIM2
5.48e-74FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_17d81f0564e13d7cbf92bacc4ce9883dp1@LIM2
3.8e-56FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_0cde5419ef31fa8b1f27b26d3b1703c0p1@CRYBA4
3.8e-56FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_0cde5419ef31fa8b1f27b26d3b1703c0p1@CRYBA4
3.1e-50FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_fac8ab668c965df8ff47b805fbdea2d2p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_fac8ab668c965df8ff47b805fbdea2d2p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_fac8ab668c965df8ff47b805fbdea2d2p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_fac8ab668c965df8ff47b805fbdea2d2p@chr13:104778247..104778293, +
5.14e-50FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_6ac540d941590918f0bacca88a090a10p7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_6ac540d941590918f0bacca88a090a10p7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_6ac540d941590918f0bacca88a090a10p2@CU686889
5.14e-50FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_6ac540d941590918f0bacca88a090a10p2@CU686889
6.6e-50FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_654233e55c20f2a7eb218844179c097cp1@CU686889
6.6e-50FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_654233e55c20f2a7eb218844179c097cp@chr21:44589339..44589372, -
6.6e-50FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_654233e55c20f2a7eb218844179c097cp1@CU686889
6.6e-50FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_654233e55c20f2a7eb218844179c097cp@chr12:132475501..132475504, +
6.6e-50FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_654233e55c20f2a7eb218844179c097cp@chr12:132475501..132475504, +
6.6e-50FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_654233e55c20f2a7eb218844179c097cp@chr21:44589339..44589372, -
6.27e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_3020ef30965e700807ac94f9a73a194bp11@PAX6
6.27e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_3020ef30965e700807ac94f9a73a194bp11@PAX6
1.92e-41FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_8aa1f6d305e294f707f7959f5dda380dp1@CRYGS
1.92e-41FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_8aa1f6d305e294f707f7959f5dda380dp1@CRYGS
4.94e-40FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_b629a5d0cff80ba40cf8443bb611be93p@chr5:112173525..112173532, +
4.94e-40FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_b629a5d0cff80ba40cf8443bb611be93p@chr5:112173525..112173532, +
1.62e-37FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_d3e601c784abd4045b54cebdb5b3aeadp7@PTPRU
1.62e-37FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_d3e601c784abd4045b54cebdb5b3aeadp7@PTPRU
2.1e-35FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_12f916bd4c3791075d80111819ac5599p3@SIX6
2.1e-35FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_12f916bd4c3791075d80111819ac5599p3@SIX6
6.73e-35FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_15238415c7addab4d7943f0902f6fa0bp4@SIX6
6.73e-35FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_15238415c7addab4d7943f0902f6fa0bp4@SIX6
5.06e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_71621891bcaf7699352a98515ccaa543p@chr11:31667372..31667383, -
5.06e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_71621891bcaf7699352a98515ccaa543p@chr11:31667372..31667383, -
8.36e-34FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_c5dc255406f7b4a1aa8a697fce2d96f8p@chr19:1470631..1470648, -
8.36e-34FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_c5dc255406f7b4a1aa8a697fce2d96f8p@chr19:1470631..1470648, -
5.55e-33FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_ff4c9a5c6637de08eee37cc3b8040155p1@CRYAA
5.55e-33FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_ff4c9a5c6637de08eee37cc3b8040155p1@CRYAA
9.55e-33FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_90e8e26c1811fed69b76b5e1ac47c7e0p1@CRYBA1
9.55e-33FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_90e8e26c1811fed69b76b5e1ac47c7e0p1@CRYBA1
2.74e-29FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_41b061f04fdf0efc64ded81d1e08121ep2@ENST00000456467
2.74e-29FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_41b061f04fdf0efc64ded81d1e08121ep2@ENST00000456467
3.65e-29FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_3a3d02e83746b3cf273e67e417020944p13@NRCAM
3.65e-29FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_3a3d02e83746b3cf273e67e417020944p13@NRCAM
7.46e-29FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_ffc5d084f70a4d7d71b9477288a325fep@chr13:114202163..114202178, +
7.46e-29FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_ffc5d084f70a4d7d71b9477288a325fep@chr13:114202163..114202178, +
1.36e-28FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_af5ee095dd1839916ec427a25e3467b5p10@NLGN1
1.36e-28FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_af5ee095dd1839916ec427a25e3467b5p10@NLGN1
2.64e-27FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_2c9a9b3d96a93e82667d27b650d70f15p10@SIX3
2.64e-27FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_2c9a9b3d96a93e82667d27b650d70f15p10@SIX3
8.39e-27FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_1b24db916ababe504ed826cd56db96ccp2@SIX6
8.39e-27FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_1b24db916ababe504ed826cd56db96ccp2@SIX6
5.56e-26FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_3ef4a025590bfb8c0fdd108220557e10p@chrX:43587410..43587413, +
5.56e-26FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_3ef4a025590bfb8c0fdd108220557e10p@chr9:75848662..75848671, -
5.56e-26FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_3ef4a025590bfb8c0fdd108220557e10p1@GJA8
5.56e-26FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_3ef4a025590bfb8c0fdd108220557e10p@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_3ef4a025590bfb8c0fdd108220557e10p@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_3ef4a025590bfb8c0fdd108220557e10p3@CLRN1
5.56e-26FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_3ef4a025590bfb8c0fdd108220557e10p@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_3ef4a025590bfb8c0fdd108220557e10p@chrX:43587410..43587413, +
5.56e-26FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_3ef4a025590bfb8c0fdd108220557e10p@chr19:40920692..40920700, -
5.56e-26FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_3ef4a025590bfb8c0fdd108220557e10p1@GJA8
5.56e-26FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_3ef4a025590bfb8c0fdd108220557e10p3@CLRN1
5.56e-26FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_3ef4a025590bfb8c0fdd108220557e10p@chr20:35861148..35861151, +
7.14e-26FFCP PHASE1:Hg19::chr21:36253916..36253918,-#_741cf461150fd901a575cdcd3da16f8fp@chr21:36253916..36253918, -
7.14e-26FFCP PHASE1:Hg19::chr19:41727698..41727705,+#_741cf461150fd901a575cdcd3da16f8fp@chr19:41727698..41727705, +
7.14e-26FFCP PHASE2:Hg19::chr1:45769711..45769721,-#_741cf461150fd901a575cdcd3da16f8fp@chr1:45769711..45769721, -
7.14e-26FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_741cf461150fd901a575cdcd3da16f8fp19@DACH1
7.14e-26FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_741cf461150fd901a575cdcd3da16f8fp11@UQCC
7.14e-26FFCP PHASE2:Hg19::chr21:44592358..44592365,+#_741cf461150fd901a575cdcd3da16f8fp@chr21:44592358..44592365, +
7.14e-26FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_741cf461150fd901a575cdcd3da16f8fp@chr10:73406056..73406065, +
7.14e-26FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_741cf461150fd901a575cdcd3da16f8fp@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_741cf461150fd901a575cdcd3da16f8fp@chr10:73406056..73406065, +
7.14e-26FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_741cf461150fd901a575cdcd3da16f8fp@chr3:156322310..156322314, -
7.14e-26FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_741cf461150fd901a575cdcd3da16f8fp@chr9:100057272..100057276, +
7.14e-26FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_741cf461150fd901a575cdcd3da16f8fp3@NDUFA5
7.14e-26FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_741cf461150fd901a575cdcd3da16f8fp5@CU686889
7.14e-26FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_741cf461150fd901a575cdcd3da16f8fp@chr21:44592788..44592807, +
7.14e-26FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_741cf461150fd901a575cdcd3da16f8fp6@CPAMD8
7.14e-26FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_741cf461150fd901a575cdcd3da16f8fp1@ENST00000426794
7.14e-26FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_741cf461150fd901a575cdcd3da16f8fp@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_741cf461150fd901a575cdcd3da16f8fp@chr5:45038620..45038622, +
7.14e-26FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_741cf461150fd901a575cdcd3da16f8fp@chr5:124468141..124468176, -
7.14e-26FFCP PHASE2:Hg19::chr2:693025..693036,+#_741cf461150fd901a575cdcd3da16f8fp@chr2:693025..693036, +
7.14e-26FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_741cf461150fd901a575cdcd3da16f8fp@chr2:10538258..10538282, +
7.14e-26FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_741cf461150fd901a575cdcd3da16f8fp@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_741cf461150fd901a575cdcd3da16f8fp4@CU686889
7.14e-26FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_741cf461150fd901a575cdcd3da16f8fp@chr4:140656282..140656285, -
7.14e-26FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_741cf461150fd901a575cdcd3da16f8fp1@MIP
7.14e-26FFCP PHASE1:Hg19::chr13:44875179..44875188,-#_741cf461150fd901a575cdcd3da16f8fp@chr13:44875179..44875188, -
7.14e-26FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_741cf461150fd901a575cdcd3da16f8fp@chr1:45769711..45769721, -
7.14e-26FFCP PHASE2:Hg19::chr5:464155..464205,+#_741cf461150fd901a575cdcd3da16f8fp@chr5:464155..464205, +
7.14e-26FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_741cf461150fd901a575cdcd3da16f8fp@chr16:85617064..85617073, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_741cf461150fd901a575cdcd3da16f8fp@chr21:44592358..44592365, +
7.14e-26FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_741cf461150fd901a575cdcd3da16f8fp@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_741cf461150fd901a575cdcd3da16f8fp@chr21:44592512..44592521, +
7.14e-26FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_741cf461150fd901a575cdcd3da16f8fp11@UQCC
7.14e-26FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_741cf461150fd901a575cdcd3da16f8fp@chr5:124468141..124468176, -

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