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{{f5samples
{{f5samples
|DRA_sample_Accession=chicken_CAGE@SAMD00053769
|accession_numbers=chicken_CAGE;DRX057298;DRR063057;DRZ007552;DRZ007584
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0005418,UBERON:0000922,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0003102,UBERON:0010317,UBERON:0004357,UBERON:0004347,UBERON:0005420,UBERON:0000154
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0005418,UBERON:0000922,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0003102,UBERON:0010317,UBERON:0004357,UBERON:0004347,UBERON:0005420,UBERON:0000154
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|is_a=EFO:0002091;;FF:0000244
|is_a=EFO:0002091;;FF:0000244
|is_obsolete=
|is_obsolete=
|library_id=CNhs14213
|name=chicken leg buds, day03 (HH20)
|name=chicken leg buds, day03 (HH20)
|namespace=FANTOM5
|namespace=FANTOM5
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|rna_weight_ug=27
|rna_weight_ug=27
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
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|sample_note=Roughly equivalent of mouse E10.5
|sample_note=Roughly equivalent of mouse E10.5
|sample_sex=
|sample_sex=
|sample_species=Chicken (Gallus gallus)
|sample_species=Gallus gallus
|sample_strain=
|sample_strain=
|sample_tissue=leg bud
|sample_tissue=leg bud
|top_motifs=
|top_motifs=
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_chicken;search_select_hide=table111:FF:10233-103I8;search_select_hide=table117:FF:10233-103I8
}}
}}

Latest revision as of 09:38, 5 June 2020


Name:chicken leg buds, day03 (HH20)
Species:Gallus gallus
Library ID:CNhs14213
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissueleg bud
dev stageHH20
sexNA
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
chicken_CAGE  SAMD00053769
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs14213 chicken_CAGE DRX057298 DRR063057
Accession ID

Library idBAMCTSS
CNhs14213 DRZ007552 DRZ007584



FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0005418 (hindlimb bud)
0000922 (embryo)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0004357 (paired limb/fin bud)
0004347 (limb bud)
0005420 (pelvic appendage bud)
0000154 (posterior region of body)

FF: FANTOM5
0000101 (sample by species)
0000032 (chicken sample)
0000001 (sample)
0000242 (chicken developmental series)
0000244 (chicken leg bud day3 HH20)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005418 (hindlimb bud)
UBERON:0005733 (limb field)
UBERON:0005732 (limb/fin field)
UBERON:0005730 (hindlimb/pelvic fin field)
UBERON:0010316 (germ layer / neural crest)